AT1G71691

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009185
Physical Location & Seq
Reverse (-)
26948743 .. 26951547
2805 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71691.3

Sequence Viewer

Length: 852 bp
ATGGGATTGGTAACTCAACTATTGGGGCTGCCACTGATTCCGGCCTACTCGGAAGCTACCGGAGATCAAGTACTTCGTGGTGTCAACTATGCTTCCGCAGCCGCGGGGATTCTTCCTGACACCGGAGGAAACTTTGTGGGACGCATACCTTTCGACCAGCAGATTCATAACTTCGAGACAACACTAGATCAGGTGGCGAGCAAGTCCGGTGGTGCAGTGGCCATTGCGGATTCGGTGACTCGAAGCTTGTTCTTCATCGGAATGGGAAGCAACGACTATCTCAACAATTACTTGATGCCCAATTTCCCTACCCGTAACCAATACAACTCCCAACAGTTCGGTGATCTCTTGGTTCAACATTACACCGATCAGCTCACCAGACTATATAATCTTGGTGGTCGGAAATTTGTAGTGGCCGGACTTGGAAGAATGGGGTGCATTCCCAGCATTCTAGCTCAAGGAAACGACGGTAAATGCTCGGAAGAAGTGAACCAACTTGTTCTTCCTTTCAACACAAACGTTAAAACAATGATCTCTAATCTCAACCAGAATCTCCCGGATGCTAAATTTATTTACCTCGACATCGCTCATATGTTCGAAGACATCGTTGCTAACCAAGCAGCTTATGGTCTTACTACTATGGACAAAGGATGTTGTGGAATAGGAAAAAACAGAGGACAGATCACTTGTCTTCCCTTTGAAACGCCTTGTCCTAACAGAGATCAGTATGTGTTTTGGGATGCTTTCCATCCTACAGAGAAAGTTAATCTCATAATGGCAAAGAAAGCGTTTGCTGGTGACCGCACTGTCGCGTACCCGATCAACATTCAGCAATTGGCTAGTCTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

283

Amino Acids

30.96

Weight (kDa)

5.78

Isoelectric Point (pI)

25.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 56 - 307 7.3e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AccII CGCG 2 cut(s) 104, 812
AciI CCGC 5 cut(s) 96, 102, 104, 227, 802
AclI AACGTT 1 cut(s) 519
AcoI YGGCCR 2 cut(s) 219, 414
AcsI RAATTY 2 cut(s) 404, 566
AfaI GTAC 2 cut(s) 72, 815
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 356, 511, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
AluBI AGCT 5 cut(s) 56, 246, 373, 455, 623
AluI AGCT 5 cut(s) 56, 246, 373, 455, 623
Alw26I GTCTC 2 cut(s) 170, 848
AoxI GGCC 3 cut(s) 42, 219, 414
ApeKI GCWGC 3 cut(s) 28, 98, 620
ApoI RAATTY 2 cut(s) 404, 566
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 4 cut(s) 247, 353, 367, 809
AsuII TTCGAA 1 cut(s) 597
BalI TGGCCA 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 606, 683
BbvI GCAGC 3 cut(s) 15, 110, 632
BccI CCATC 1 cut(s) 756
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 2 cut(s) 170, 848
BfaI CTAG 3 cut(s) 185, 452, 840
BfmI CTRYAG 1 cut(s) 753
BisI GCNGC 4 cut(s) 29, 99, 102, 621
BlsI GCNGC 4 cut(s) 30, 100, 103, 622
BmcAI AGTACT 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 3 cut(s) 285, 550, 730
BpiI GAAGAC 2 cut(s) 606, 683
Bpu14I TTCGAA 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 3 cut(s) 59, 122, 206
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 4 cut(s) 565, 656, 745, 748
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 15, 110, 632
BseYI CCCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 104, 812
BshFI GGCC 3 cut(s) 44, 221, 416
BsiSI CCGG 6 cut(s) 41, 60, 123, 207, 417, 557
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 170, 848
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 2 cut(s) 438, 447
BsnI GGCC 3 cut(s) 44, 221, 416
Bsp119I TTCGAA 1 cut(s) 597
Bsp143I GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
BspACI CCGC 5 cut(s) 96, 102, 104, 227, 802
BspANI GGCC 3 cut(s) 44, 221, 416
BspFNI CGCG 2 cut(s) 104, 812
BspT104I TTCGAA 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
Bst4CI ACNGT 3 cut(s) 336, 470, 808
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 797
BstF5I GGATG 4 cut(s) 565, 656, 745, 748
BstFNI CGCG 2 cut(s) 104, 812
BstKTI GATC 8 cut(s) 67, 190, 346, 370, 534, 684, 724, 822
BstMAI GTCTC 2 cut(s) 170, 848
BstMBI GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
BstMWI GCNNNNNNNGC 4 cut(s) 98, 444, 617, 785
BstPI GGTNACC 1 cut(s) 797
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 2 cut(s) 104, 812
BstV1I GCAGC 3 cut(s) 15, 110, 632
BstV2I GAAGAC 2 cut(s) 606, 683
BsuRI GGCC 3 cut(s) 44, 221, 416
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 568
BtsCI GGATG 4 cut(s) 565, 656, 745, 748
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 3 cut(s) 32, 222, 804
Cac8I GCNNGC 1 cut(s) 199
Cfr42I CCGCGG 1 cut(s) 105
CseI GACGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 71, 814
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviQI GTAC 2 cut(s) 71, 814
DpnI GATC 8 cut(s) 66, 189, 345, 369, 533, 683, 723, 821
DpnII GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 219, 414
Eco91I GGTNACC 1 cut(s) 797
EcoO65I GGTNACC 1 cut(s) 797
FaqI GGGAC 1 cut(s) 153
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 591
Fnu4HI GCNGC 4 cut(s) 29, 99, 102, 621
FokI GGATG 4 cut(s) 572, 663, 735, 752
Fsp4HI GCNGC 4 cut(s) 29, 99, 102, 621
FspBI CTAG 3 cut(s) 185, 452, 840
GluI GCNGC 4 cut(s) 29, 99, 102, 621
GsaI CCCAGC 1 cut(s) 447
HaeIII GGCC 3 cut(s) 44, 221, 416
HapII CCGG 6 cut(s) 41, 60, 123, 207, 417, 557
HgaI GACGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 6 cut(s) 37, 109, 163, 230, 238, 550
HpaII CCGG 6 cut(s) 41, 60, 123, 207, 417, 557
HphI GGTGA 4 cut(s) 247, 353, 367, 809
Hpy166II GTNNAC 2 cut(s) 85, 490
Hpy188I TCNGA 4 cut(s) 52, 260, 402, 481
Hpy188III TCNNGA 2 cut(s) 116, 175
Hpy8I GTNNAC 2 cut(s) 85, 490
Hpy99I CGWCG 1 cut(s) 470
HpyCH4III ACNGT 3 cut(s) 336, 470, 808
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 2 cut(s) 215, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 444, 617, 785
HpySE526I ACGT 1 cut(s) 519
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
Lsp1109I GCAGC 3 cut(s) 15, 110, 632
LweI GCATC 3 cut(s) 285, 550, 730
MaeI CTAG 3 cut(s) 185, 452, 840
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 4 cut(s) 10, 235, 314, 797
MalI GATC 8 cut(s) 66, 189, 345, 369, 533, 683, 723, 821
MboI GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
MboII GAAGA 7 cut(s) 104, 244, 438, 494, 494, 611, 683
MfeI CAATTG 1 cut(s) 833
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 6 cut(s) 286, 301, 404, 566, 833, 847
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 3 cut(s) 119, 587, 668
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 3 cut(s) 522, 765, 850
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 6 cut(s) 41, 60, 123, 207, 417, 557
MspR9I CCNGG 1 cut(s) 557
MunI CAATTG 1 cut(s) 833
Mva1269I GAATGC 2 cut(s) 438, 447
MvnI CGCG 2 cut(s) 104, 812
MwoI GCNNNNNNNGC 4 cut(s) 98, 444, 617, 785
NciI CCSGG 1 cut(s) 557
NdeI CATATG 1 cut(s) 591
NdeII GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
NmuCI GTSAC 2 cut(s) 235, 797
NspV TTCGAA 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 2 cut(s) 438, 447
PfeI GAWTC 5 cut(s) 37, 109, 163, 230, 550
PfoI TCCNGGA 1 cut(s) 555
PkrI GCNGC 4 cut(s) 30, 100, 103, 622
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp1406I AACGTT 1 cut(s) 519
PspEI GGTNACC 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 443
RsaI GTAC 2 cut(s) 72, 815
RsaNI GTAC 2 cut(s) 71, 814
RseI CAYNNNNRTG 1 cut(s) 260
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 522, 765, 850
SatI GCNGC 4 cut(s) 29, 99, 102, 621
Sau3AI GATC 8 cut(s) 64, 187, 343, 367, 531, 681, 721, 819
ScaI AGTACT 1 cut(s) 72
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 557
SetI ASST 9 cut(s) 58, 151, 195, 248, 375, 457, 522, 579, 625
SfaNI GCATC 3 cut(s) 285, 550, 730
SfcI CTRYAG 1 cut(s) 753
Sfr303I CCGCGG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 597
SgrBI CCGCGG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 6 cut(s) 286, 301, 404, 566, 833, 847
SsiI CCGC 5 cut(s) 96, 102, 104, 227, 802
SspMI CTAG 3 cut(s) 185, 452, 840
StyD4I CCNGG 1 cut(s) 555
TaaI ACNGT 3 cut(s) 336, 470, 808
TaiI ACGT 1 cut(s) 522
TaqI TCGA 5 cut(s) 153, 174, 241, 579, 597
TasI AATT 6 cut(s) 286, 301, 404, 566, 833, 847
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 5 cut(s) 37, 109, 163, 230, 550
Tru1I TTAA 3 cut(s) 522, 765, 850
Tru9I TTAA 3 cut(s) 522, 765, 850
TscAI CASTG 3 cut(s) 39, 222, 811
TseFI GTSAC 2 cut(s) 235, 797
TseI GCWGC 3 cut(s) 28, 98, 620
Tsp45I GTSAC 2 cut(s) 235, 797
TspDTI ATGAA 2 cut(s) 155, 244
TspRI CASTG 3 cut(s) 39, 222, 811
XapI RAATTY 2 cut(s) 404, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XspI CTAG 3 cut(s) 185, 452, 840
ZrmI AGTACT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.