Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009185

Physical Location & Seq

Genomic Coordinates Reverse (-)

44744493 .. 44746632

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G547600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGTGCTGGGTGGGGCGGTTTGGGGCCAAGATGTGAACTTTTCATCAGCGGCTGCAGCAGCAGCAGCACCACAAGGTCAAGTGGGTGGTGGTGGGAGGAGCGCAGAAATGGTGCCTGCCATGTTTGTGTTTGGAGACTCTTTGATTGACAATGGCAACAACAACAACATCCCATCATTTGCCAAGGCTAACTATTTCCCCTATGGCATTGATTTCAATGGTGGCCCTACCGGTCGTTTTTCCAATGGTTACACCATGGTTGATGAAATAGCTGAACTGCTAGGACTTCCCTTGATTCCTCCTTTTTCTGAAGCTTCTGGAGACCAAGTGCTTCATGGAGTCAATTATGCATCTGCAGCAGCTGGAATCCTTGATATCACTGGCAGAAACTTTGTGGGAAGAATACCTTTTGGTGAACAAATAAGGAACTTCCAGAGTACCCTTGATCAGATTACAGACAATCTCGGGGCAGATGACGTGGCCGGGGCAATTGCAGACTGCATCTTCTTTGTTGGAATGGGCAGCAATGACTACCTAAACAATTATCTTATGCCCAACTATCCCACAAGAACTCAGTACAATGCTCCACAATTTGCTGATCTTTTGACTCAACAATACACCCAGCAACTCACTAGACTCTATAATCTTGGTGCTCGAAAGTTTGTTGTTGCTGGATTAGGGAGAATGGGCTGCATTCCAAGTATCTTGGCCCAGAGTCCAAGTGGAAGGTGCAATGAGGAAGTGAATCGCCTTGTTCTACCGTTTAATGCAAATGTGAAGACAATGATCAACAAACTTAACACCAACTTGCCAGGCGCAAAGTTCATTTACATTGACATTGCTCGAATATTCGAAGACATCGTCAACAATGCCAGATCTTATGGATTCACTGTTGCAAATCGTGGATGCTGTGGCATTGGGCGCAACAGAGGCCAAATTACATGTCTTCCACTCCAAACACCATGCCCGAATCGAGACCAGTACATATTCTGGGATGCTTTCCACCCAACAGCAGCAGCCAACATCATAATTGGGAGGAAAGCTTTCAATGGGGACCTTAGCCAGGTTTATCCCATGAACATACAGAAGCTTGCCACTCTTAACATTAAAAGCAGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

374

Amino Acids

40.24

Weight (kDa)

6.14

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71691 AT1G71691 AT1G71691
fragaria_vesca	FvH4_5g32890 FvH4_5g32890 FvH4_5g32890
malus_domestica	MD10G1100600.v1.1 MD15G1400200.v1.1
prunus_persica	Prupe.1G547600_v2.0.a1
pyrus_communis	pycom15g35880
rosa_chinensis	RchiOBHm_Chr7g0230861
rosa_laevigata	RLG00000001457
rosa_multiflora	Rmu_sc0000551.1_g000018 Rmu_sc0005051.1_g000001 Rmu_sc0010407.1_g000023
rosa_roxburghii	Rroxscaffold_3G00229740
rosa_rugosa	Rorug07G0262600
rosa_samantha	Rh7AG415800 Rh7CG434800 Rh7DG410300
rosa_wichuraiana	Rw7G034280 Rw7G034440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	2 cut(s)	17, 50
AcoI	YGGCCR	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	3 cut(s)	439, 578, 983
AfiI	CCNNNNNNNGG	1 cut(s)	1063
AflIII	ACRYGT	1 cut(s)	941
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	217, 1048
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	2 cut(s)	811, 1062
AluBI	AGCT	5 cut(s)	272, 314, 362, 1043, 1090
AluI	AGCT	5 cut(s)	272, 314, 362, 1043, 1090
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	3 cut(s)	129, 315, 969
AlwNI	CAGNNNCTG	2 cut(s)	53, 362
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	5 cut(s)	25, 223, 480, 708, 931
ArsI	GACNNNNNNTTYG	4 cut(s)	846, 878, 928, 960
AsiGI	ACCGGT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	1043
AspLEI	GCGC	3 cut(s)	104, 818, 924
AspS9I	GGNCC	4 cut(s)	25, 224, 709, 1054
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	852
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	1054
BanI	GGYRCC	1 cut(s)	112
BbsI	GAAGAC	3 cut(s)	785, 861, 938
Bbv12I	GWGCWC	1 cut(s)	655
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	813, 1064
BclI	TGATCA	2 cut(s)	445, 786
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	3 cut(s)	129, 315, 969
BfaI	CTAG	2 cut(s)	281, 633
BfmI	CTRYAG	2 cut(s)	54, 354
BglII	AGATCT	1 cut(s)	875
Bme1390I	CCNGG	3 cut(s)	484, 813, 1064
Bme18I	GGWCC	1 cut(s)	1054
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	4 cut(s)	25, 224, 709, 1054
BmiI	GGNNCC	3 cut(s)	26, 114, 1055
BmrFI	CCNGG	3 cut(s)	484, 813, 1064
BmsI	GCATC	4 cut(s)	359, 510, 896, 985
BpiI	GAAGAC	3 cut(s)	785, 861, 938
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	1058
Bpu14I	TTCGAA	1 cut(s)	852
BpuMI	CCSGG	1 cut(s)	484
BsaI	GGTCTC	2 cut(s)	315, 969
BsaJI	CCNNGG	3 cut(s)	183, 255, 483
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	1063
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	385, 979
Bse3DI	GCAATG	3 cut(s)	532, 739, 837
BseBI	CCWGG	2 cut(s)	813, 1064
BseDI	CCNNGG	3 cut(s)	183, 255, 483
BseGI	GGATG	3 cut(s)	168, 911, 1000
BseLI	CCNNNNNNNGG	1 cut(s)	1063
BseMI	GCAATG	3 cut(s)	532, 739, 837
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	385, 979
BseRI	GAGGAG	1 cut(s)	112
BseYI	CCCAGC	2 cut(s)	7, 621
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	5 cut(s)	27, 225, 482, 710, 933
BshNI	GGYRCC	1 cut(s)	112
BshTI	ACCGGT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	231, 483
BslFI	GGGAC	1 cut(s)	1067
BslI	CCNNNNNNNGG	1 cut(s)	1063
BsmAI	GTCTC	3 cut(s)	129, 315, 969
BsmFI	GGGAC	1 cut(s)	1067
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	5 cut(s)	27, 225, 482, 710, 933
Bso31I	GGTCTC	2 cut(s)	315, 969
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	852
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	445, 598, 786, 875
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	2 cut(s)	17, 50
BspANI	GGCC	5 cut(s)	27, 225, 482, 710, 933
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	26, 114, 1055
BspMAI	CTGCAG	2 cut(s)	58, 358
BspT104I	TTCGAA	1 cut(s)	852
BspT107I	GGYRCC	1 cut(s)	112
BspTNI	GGTCTC	2 cut(s)	315, 969
BsrDI	GCAATG	3 cut(s)	532, 739, 837
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	385, 979
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	183, 255, 483
BssMI	GATC	4 cut(s)	445, 598, 786, 875
BssT1I	CCWWGG	2 cut(s)	183, 255
Bst2UI	CCWGG	2 cut(s)	813, 1064
Bst4CI	ACNGT	2 cut(s)	762, 892
BstBI	TTCGAA	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	117, 1092
BstDEI	CTNAG	2 cut(s)	573, 1058
BstDSI	CCRYGG	1 cut(s)	255
BstENI	CCTNNNNNAGG	1 cut(s)	1061
BstF5I	GGATG	3 cut(s)	168, 911, 1000
BstHHI	GCGC	3 cut(s)	104, 818, 924
BstKTI	GATC	4 cut(s)	448, 601, 789, 878
BstMAI	GTCTC	3 cut(s)	129, 315, 969
BstMBI	GATC	4 cut(s)	445, 598, 786, 875
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 59, 62, 65, 356, 921, 930
BstNI	CCWGG	2 cut(s)	813, 1064
BstNSI	RCATGY	1 cut(s)	945
BstSCI	CCNGG	3 cut(s)	482, 811, 1062
BstSFI	CTRYAG	2 cut(s)	54, 354
BstV2I	GAAGAC	3 cut(s)	785, 861, 938
BstX2I	RGATCY	1 cut(s)	875
BstYI	RGATCY	1 cut(s)	875
BsuRI	GGCC	5 cut(s)	27, 225, 482, 710, 933
BtgI	CCRYGG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	168, 911, 1000
BtsIMutI	CAGTG	2 cut(s)	378, 888
Cac8I	GCNNGC	2 cut(s)	117, 1092
CaiI	CAGNNNCTG	2 cut(s)	53, 362
CfoI	GCGC	3 cut(s)	104, 818, 924
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	4 cut(s)	25, 224, 709, 1054
Csp6I	GTAC	3 cut(s)	438, 577, 982
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	6 cut(s)	121, 256, 335, 942, 963, 1075
CviQI	GTAC	3 cut(s)	438, 577, 982
DdeI	CTNAG	2 cut(s)	573, 1058
DpnI	GATC	4 cut(s)	447, 600, 788, 877
DpnII	GATC	4 cut(s)	445, 598, 786, 875
EaeI	YGGCCR	1 cut(s)	480
Eco130I	CCWWGG	2 cut(s)	183, 255
Eco31I	GGTCTC	2 cut(s)	315, 969
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	1054
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	1061
EcoO109I	RGGNCCY	1 cut(s)	1054
EcoRII	CCWGG	2 cut(s)	811, 1062
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	183, 255
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	183, 255
FaeI	CATG	6 cut(s)	124, 259, 338, 945, 966, 1078
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	1 cut(s)	1067
FatI	CATG	6 cut(s)	120, 255, 334, 941, 962, 1074
FbaI	TGATCA	2 cut(s)	445, 786
FokI	GGATG	3 cut(s)	155, 918, 1007
FspBI	CTAG	2 cut(s)	281, 633
GlaI	GCGC	3 cut(s)	103, 817, 923
GsaI	CCCAGC	2 cut(s)	11, 625
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	27, 225, 482, 710, 933
HapII	CCGG	2 cut(s)	231, 483
HhaI	GCGC	3 cut(s)	104, 818, 924
Hin1II	CATG	6 cut(s)	124, 259, 338, 945, 966, 1078
Hin6I	GCGC	3 cut(s)	102, 816, 922
HinP1I	GCGC	3 cut(s)	102, 816, 922
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HindIII	AAGCTT	3 cut(s)	312, 1041, 1088
HpaII	CCGG	2 cut(s)	231, 483
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	37, 416, 865
Hpy188I	TCNGA	2 cut(s)	310, 450
Hpy188III	TCNNGA	3 cut(s)	318, 433, 974
Hpy8I	GTNNAC	3 cut(s)	37, 416, 865
HpyAV	CCTTC	1 cut(s)	720
HpyCH4III	ACNGT	2 cut(s)	762, 892
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	9 cut(s)	56, 350, 356, 494, 501, 693, 732, 770, 896
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 59, 62, 65, 356, 921, 930
HpyF3I	CTNAG	2 cut(s)	573, 1058
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	6 cut(s)	124, 259, 338, 945, 966, 1078
HspAI	GCGC	3 cut(s)	102, 816, 922
Ksp22I	TGATCA	2 cut(s)	445, 786
Kzo9I	GATC	4 cut(s)	445, 598, 786, 875
LmnI	GCTCC	2 cut(s)	99, 589
LweI	GCATC	4 cut(s)	359, 510, 896, 985
MaeI	CTAG	2 cut(s)	281, 633
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	4 cut(s)	447, 600, 788, 877
MboI	GATC	4 cut(s)	445, 598, 786, 875
MboII	GAAGA	5 cut(s)	411, 496, 790, 866, 938
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	875
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	6 cut(s)	343, 489, 541, 590, 936, 1029
MlyI	GAGTC	5 cut(s)	131, 348, 601, 630, 724
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	5 cut(s)	90, 309, 730, 923, 1029
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	1043
MseI	TTAA	4 cut(s)	765, 798, 1101, 1107
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	2 cut(s)	50, 362
MspI	CCGG	2 cut(s)	231, 483
MspR9I	CCNGG	3 cut(s)	484, 813, 1064
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	813, 1064
MwoI	GCNNNNNNNGC	7 cut(s)	56, 59, 62, 65, 356, 921, 930
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	4 cut(s)	445, 598, 786, 875
NlaIII	CATG	6 cut(s)	124, 259, 338, 945, 966, 1078
NlaIV	GGNNCC	3 cut(s)	26, 114, 1055
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	945
NspV	TTCGAA	1 cut(s)	852
PciI	ACATGT	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PctI	GAATGC	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	1043
PfeI	GAWTC	5 cut(s)	295, 366, 745, 885, 970
PflFI	GACNNNGTC	1 cut(s)	860
PinAI	ACCGGT	1 cut(s)	230
PleI	GAGTC	5 cut(s)	131, 347, 601, 630, 723
PpsI	GAGTC	5 cut(s)	131, 347, 601, 630, 723
PpuMI	RGGWCCY	1 cut(s)	1054
PscI	ACATGT	1 cut(s)	941
Psp5II	RGGWCCY	1 cut(s)	1054
Psp6I	CCWGG	2 cut(s)	811, 1062
PspFI	CCCAGC	2 cut(s)	7, 621
PspGI	CCWGG	2 cut(s)	811, 1062
PspN4I	GGNNCC	3 cut(s)	26, 114, 1055
PspPI	GGNCC	4 cut(s)	25, 224, 709, 1054
PspPPI	RGGWCCY	1 cut(s)	1054
PstI	CTGCAG	2 cut(s)	58, 358
PstNI	CAGNNNCTG	2 cut(s)	53, 362
PsuI	RGATCY	1 cut(s)	875
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	439, 578, 983
RsaNI	GTAC	3 cut(s)	438, 577, 982
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	765, 798, 1101, 1107
Sau3AI	GATC	4 cut(s)	445, 598, 786, 875
Sau96I	GGNCC	4 cut(s)	25, 224, 709, 1054
SchI	GAGTC	5 cut(s)	131, 348, 601, 630, 724
ScrFI	CCNGG	3 cut(s)	484, 813, 1064
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	4 cut(s)	359, 510, 896, 985
SfcI	CTRYAG	2 cut(s)	54, 354
SfuI	TTCGAA	1 cut(s)	852
SinI	GGWCC	1 cut(s)	1054
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	6 cut(s)	343, 489, 541, 590, 936, 1029
SsiI	CCGC	2 cut(s)	17, 50
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	2 cut(s)	281, 633
StyD4I	CCNGG	3 cut(s)	482, 811, 1062
StyI	CCWWGG	2 cut(s)	183, 255
TaaI	ACNGT	2 cut(s)	762, 892
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	655, 844, 852, 973
TasI	AATT	6 cut(s)	343, 489, 541, 590, 936, 1029
TatI	WGTACW	2 cut(s)	576, 981
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	5 cut(s)	295, 366, 745, 885, 970
Tru1I	TTAA	4 cut(s)	765, 798, 1101, 1107
Tru9I	TTAA	4 cut(s)	765, 798, 1101, 1107
TscAI	CASTG	2 cut(s)	385, 895
TspDTI	ATGAA	5 cut(s)	33, 279, 323, 814, 1091
TspRI	CASTG	2 cut(s)	385, 895
Tth111I	GACNNNGTC	1 cut(s)	860
VpaK11BI	GGWCC	1 cut(s)	1054
XagI	CCTNNNNNAGG	1 cut(s)	1061
XceI	RCATGY	1 cut(s)	945
XcmI	CCANNNNNNNNNTGG	2 cut(s)	332, 719
XmnI	GAANNNNTTC	1 cut(s)	1043
XspI	CTAG	2 cut(s)	281, 633
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.