Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000551.1

Orthogroup ID

OG0009185

Physical Location & Seq

Genomic Coordinates Reverse (-)

83436 .. 86091

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000551.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgttggtgcaagtgcacggcggtgctctgaataatctctcctcacaaacacattcattcatggctaagcactactttaggctattttcttctgctttgcttgttttgtccttcatggtggtgcaggctgaagtagtttggggtcaagatggtactgaaaggaggaaagaaatggtgcctgcaatgttcatattcggagactctctgattgacaatggcaacaacaacaacctcccttcatttgccaaggccaactatcccccctatggaatcgatttcaatggcggaccaactggtcgttttagcaatggttacaccatggttgatgaaatagctgaattgctaggacttcctttaattcctgcgtactctgaagcttctggagatcaagtgcttcatggtgtcaattatgcatctgcagccgctggaatccttgatatcactggcagaaactttgtgggtcgcataccctttggtcaacaaataagcaacttccagactacagttgatcagataacggagactctgggtgcagatgatgttgcccgggccattgcaaagtgcatattctttgttggaatgggcagcaatgactacctaaacaattaccttatgcccaactataacaccaagaatcaatacaatgctcaacaatttgctgatctcttggctcaacaatacactcagcaactcactaggctctacaatcttggtgctcgaagatttgttattgctggagttgggaggatgggttgcataccaagtatcttagcccaaagtccaaatggaagctgctcagaggacgtcaatcgccttgttctacccttcaacgcaaatgtgaagacaatgatcaacaatcttaataccaacttacctggttcgaggttcatttacattgacattgctcgaatgtttgaagacgtcgtcaccaatgctagagcttatggattcagtgttgcgaatcgtggatgctgtggtattgggcgtaacagagggcaaattacatgtcttccaatgcaaacaccgtgcccaaatcgtgaccagtacgtgttctgggatgcatatcacccaactgcagctgtgaacatcttaattggcaggaaagctttcagtggagaccctagccaggtttaccccatgaacatacagcagcttgccactcttaacattgaaaccaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

393

Amino Acids

43.23

Weight (kDa)

6.51

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71691 AT1G71691 AT1G71691
fragaria_vesca	FvH4_5g32890 FvH4_5g32890 FvH4_5g32890
malus_domestica	MD10G1100600.v1.1 MD15G1400200.v1.1
prunus_persica	Prupe.1G547600_v2.0.a1
pyrus_communis	pycom15g35880
rosa_chinensis	RchiOBHm_Chr7g0230861
rosa_laevigata	RLG00000001457
rosa_multiflora	Rmu_sc0000551.1_g000018 Rmu_sc0005051.1_g000001 Rmu_sc0010407.1_g000023
rosa_roxburghii	Rroxscaffold_3G00229740
rosa_rugosa	Rorug07G0262600
rosa_samantha	Rh7AG415800 Rh7CG434800 Rh7DG410300
rosa_wichuraiana	Rw7G034280 Rw7G034440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
AatII	GACGTC	2 cut(s)	807, 924
AccB1I	GGYRCC	1 cut(s)	175
AciI	CCGC	3 cut(s)	21, 285, 423
AcuI	CTGAAG	2 cut(s)	150, 393
AcyI	GRCGYC	2 cut(s)	804, 921
AfaI	GTAC	3 cut(s)	154, 368, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	266, 1126
AflIII	ACRYGT	2 cut(s)	1004, 1047
AgsI	TTSAA	4 cut(s)	280, 829, 917, 1172
AjnI	CCWGG	2 cut(s)	874, 1125
AleI	CACNNNNGTG	1 cut(s)	21
AluBI	AGCT	7 cut(s)	335, 377, 792, 941, 1079, 1106, 1153
AluI	AGCT	7 cut(s)	335, 377, 792, 941, 1079, 1106, 1153
Alw21I	GWGCWC	3 cut(s)	18, 28, 718
Alw26I	GTCTC	3 cut(s)	192, 515, 1110
Alw44I	GTGCAC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	2 cut(s)	249, 549
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	5 cut(s)	419, 585, 792, 1076, 1150
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
Asp700I	GAANNNNTTC	1 cut(s)	1106
AspS9I	GGNCC	2 cut(s)	287, 549
AsuC2I	CCSGG	2 cut(s)	547, 548
AsuHPI	GGTGA	2 cut(s)	919, 1058
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	2 cut(s)	18, 1031
BanI	GGYRCC	1 cut(s)	175
BbsI	GAAGAC	3 cut(s)	848, 924, 1001
Bbv12I	GWGCWC	3 cut(s)	18, 28, 718
BbvI	GCAGC	5 cut(s)	431, 597, 779, 1088, 1162
BccI	CCATC	2 cut(s)	143, 742
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	876, 1127
BclI	TGATCA	2 cut(s)	508, 849
BcnI	CCSGG	2 cut(s)	547, 548
BcoDI	GTCTC	3 cut(s)	192, 515, 1110
BfaI	CTAG	4 cut(s)	344, 696, 936, 1122
BfmI	CTRYAG	3 cut(s)	417, 501, 1074
BisI	GCNGC	6 cut(s)	420, 423, 586, 793, 1077, 1151
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	6 cut(s)	421, 424, 587, 794, 1078, 1152
Bme1390I	CCNGG	4 cut(s)	547, 548, 876, 1127
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	287, 549
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	4 cut(s)	547, 548, 876, 1127
BmsI	GCATC	3 cut(s)	422, 959, 1048
BpiI	GAAGAC	3 cut(s)	848, 924, 1001
BpmI	CTGGAG	2 cut(s)	402, 756
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	547, 548
Bsa29I	ATCGAT	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	1048
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaHI	GRCGYC	2 cut(s)	804, 921
BsaI	GGTCTC	1 cut(s)	1110
BsaJI	CCNNGG	3 cut(s)	246, 318, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 405, 736, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 1126
Bse1I	ACTGG	3 cut(s)	298, 448, 1042
Bse3DI	GCAATG	5 cut(s)	189, 313, 552, 595, 900
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	2 cut(s)	876, 1127
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	246, 318, 546
BseGI	GGATG	3 cut(s)	753, 974, 1063
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	2 cut(s)	266, 1126
BseMI	GCAATG	5 cut(s)	189, 313, 552, 595, 900
BseMII	CTCAG	2 cut(s)	698, 810
BseNI	ACTGG	3 cut(s)	298, 448, 1042
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	2 cut(s)	18, 1031
BseXI	GCAGC	5 cut(s)	431, 597, 779, 1088, 1162
BsgI	GTGCAG	2 cut(s)	143, 552
BshFI	GGCC	2 cut(s)	251, 551
BshNI	GGYRCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	3 cut(s)	18, 28, 718
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	266, 1126
BsmAI	GTCTC	3 cut(s)	192, 515, 1110
BsnI	GGCC	2 cut(s)	251, 551
Bso31I	GGTCTC	1 cut(s)	1110
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	4 cut(s)	18, 28, 718, 1031
Bsp143I	GATC	4 cut(s)	385, 508, 661, 849
Bsp1720I	GCTNAGC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	3 cut(s)	21, 285, 423
BspANI	GGCC	2 cut(s)	251, 551
BspCNI	CTCAG	2 cut(s)	697, 809
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	2 cut(s)	421, 1078
BspT107I	GGYRCC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	1110
BsrDI	GCAATG	5 cut(s)	189, 313, 552, 595, 900
BsrI	ACTGG	3 cut(s)	298, 448, 1042
BssECI	CCNNGG	3 cut(s)	246, 318, 546
BssMI	GATC	4 cut(s)	385, 508, 661, 849
BssNI	GRCGYC	2 cut(s)	804, 921
BssT1I	CCWWGG	2 cut(s)	246, 318
Bst2UI	CCWGG	2 cut(s)	876, 1127
Bst4CI	ACNGT	2 cut(s)	505, 1026
BstACI	GRCGYC	2 cut(s)	804, 921
BstBAI	YACGTR	1 cut(s)	1048
BstC8I	GCNNGC	3 cut(s)	126, 180, 1155
BstDEI	CTNAG	4 cut(s)	66, 684, 769, 796
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	753, 974, 1063
BstKTI	GATC	4 cut(s)	388, 511, 664, 852
BstMAI	GTCTC	3 cut(s)	192, 515, 1110
BstMBI	GATC	4 cut(s)	385, 508, 661, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	876, 1127
BstNSI	RCATGY	1 cut(s)	1008
BstSCI	CCNGG	4 cut(s)	545, 546, 874, 1125
BstSFI	CTRYAG	3 cut(s)	417, 501, 1074
BstSLI	GKGCMC	2 cut(s)	18, 1031
BstV1I	GCAGC	5 cut(s)	431, 597, 779, 1088, 1162
BstV2I	GAAGAC	3 cut(s)	848, 924, 1001
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	251, 551
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	753, 974, 1063
BtsIMutI	CAGTG	3 cut(s)	441, 958, 1117
Cac8I	GCNNGC	3 cut(s)	126, 180, 1155
CaiI	CAGNNNCTG	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	287, 549
Cfr9I	CCCGGG	1 cut(s)	546
ClaI	ATCGAT	1 cut(s)	273
CsiI	ACCWGGT	1 cut(s)	874
Csp6I	GTAC	3 cut(s)	153, 367, 1045
CviAII	CATG	6 cut(s)	61, 115, 319, 398, 1005, 1138
CviQI	GTAC	3 cut(s)	153, 367, 1045
DdeI	CTNAG	4 cut(s)	66, 684, 769, 796
DpnI	GATC	4 cut(s)	387, 510, 663, 851
DpnII	GATC	4 cut(s)	385, 508, 661, 849
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	246, 318
Eco31I	GGTCTC	1 cut(s)	1110
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	150, 393
Eco88I	CYCGRG	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	874, 1125
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	246, 318
EcoT22I	ATGCAT	2 cut(s)	415, 1063
ErhI	CCWWGG	2 cut(s)	246, 318
FaeI	CATG	6 cut(s)	64, 118, 322, 401, 1008, 1141
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	6 cut(s)	60, 114, 318, 397, 1004, 1137
FbaI	TGATCA	2 cut(s)	508, 849
Fnu4HI	GCNGC	6 cut(s)	420, 423, 586, 793, 1077, 1151
FokI	GGATG	3 cut(s)	760, 981, 1070
Fsp4HI	GCNGC	6 cut(s)	420, 423, 586, 793, 1077, 1151
FspBI	CTAG	4 cut(s)	344, 696, 936, 1122
GluI	GCNGC	6 cut(s)	420, 423, 586, 793, 1077, 1151
GsuI	CTGGAG	2 cut(s)	402, 756
HaeIII	GGCC	2 cut(s)	251, 551
HapII	CCGG	1 cut(s)	547
Hin1I	GRCGYC	2 cut(s)	804, 921
Hin1II	CATG	6 cut(s)	64, 118, 322, 401, 1008, 1141
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HindIII	AAGCTT	2 cut(s)	375, 1104
HinfI	GANTC	7 cut(s)	200, 270, 429, 523, 634, 948, 961
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	2 cut(s)	919, 1058
Hpy166II	GTNNAC	4 cut(s)	16, 479, 1084, 1132
Hpy188I	TCNGA	6 cut(s)	30, 197, 207, 373, 513, 799
Hpy188III	TCNNGA	4 cut(s)	146, 381, 496, 1037
Hpy8I	GTNNAC	4 cut(s)	16, 479, 1084, 1132
Hpy99I	CGWCG	1 cut(s)	926
HpyAV	CCTTC	3 cut(s)	121, 246, 835
HpyCH4III	ACNGT	2 cut(s)	505, 1026
HpyCH4IV	ACGT	3 cut(s)	804, 921, 1047
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	4 cut(s)	66, 684, 769, 796
HpySE526I	ACGT	3 cut(s)	804, 921, 1047
Hsp92I	GRCGYC	2 cut(s)	804, 921
Hsp92II	CATG	6 cut(s)	64, 118, 322, 401, 1008, 1141
Ksp22I	TGATCA	2 cut(s)	508, 849
Kzo9I	GATC	4 cut(s)	385, 508, 661, 849
Lsp1109I	GCAGC	5 cut(s)	431, 597, 779, 1088, 1162
LweI	GCATC	3 cut(s)	422, 959, 1048
MabI	ACCWGGT	1 cut(s)	874
MaeI	CTAG	4 cut(s)	344, 696, 936, 1122
MaeII	ACGT	3 cut(s)	804, 921, 1047
MaeIII	GTNAC	4 cut(s)	311, 925, 986, 1037
MalI	GATC	4 cut(s)	387, 510, 663, 851
MboI	GATC	4 cut(s)	385, 508, 661, 849
MboII	GAAGA	5 cut(s)	81, 732, 853, 929, 1001
MhlI	GDGCHC	4 cut(s)	18, 28, 718, 1031
MluCI	AATT	8 cut(s)	338, 357, 406, 604, 653, 999, 1092, 1177
MlyI	GAGTC	2 cut(s)	194, 517
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	7 cut(s)	52, 156, 242, 738, 793, 876, 986
Mph1103I	ATGCAT	2 cut(s)	415, 1063
MroXI	GAANNNNTTC	1 cut(s)	1106
MseI	TTAA	4 cut(s)	356, 861, 1091, 1164
MslI	CAYNNNNRTG	2 cut(s)	21, 119
MspA1I	CMGCKG	2 cut(s)	425, 1079
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	4 cut(s)	547, 548, 876, 1127
MvaI	CCWGG	2 cut(s)	876, 1127
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	547, 548
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	4 cut(s)	385, 508, 661, 849
NlaIII	CATG	6 cut(s)	64, 118, 322, 401, 1008, 1141
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	925, 1037
NsiI	ATGCAT	2 cut(s)	415, 1063
NspI	RCATGY	1 cut(s)	1008
OliI	CACNNNNGTG	1 cut(s)	21
PciI	ACATGT	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	1106
PfeI	GAWTC	5 cut(s)	270, 429, 634, 948, 961
PflFI	GACNNNGTC	1 cut(s)	923
PkrI	GCNGC	6 cut(s)	421, 424, 587, 794, 1078, 1152
PleI	GAGTC	2 cut(s)	194, 517
PpsI	GAGTC	2 cut(s)	194, 517
Ppu21I	YACGTR	1 cut(s)	1048
PscI	ACATGT	1 cut(s)	1004
Psp6I	CCWGG	2 cut(s)	874, 1125
PspGI	CCWGG	2 cut(s)	874, 1125
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	287, 549
PstI	CTGCAG	2 cut(s)	421, 1078
PstNI	CAGNNNCTG	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	3 cut(s)	154, 368, 1046
RsaNI	GTAC	3 cut(s)	153, 367, 1045
RseI	CAYNNNNRTG	2 cut(s)	21, 119
SaqAI	TTAA	4 cut(s)	356, 861, 1091, 1164
SatI	GCNGC	6 cut(s)	420, 423, 586, 793, 1077, 1151
Sau3AI	GATC	4 cut(s)	385, 508, 661, 849
Sau96I	GGNCC	2 cut(s)	287, 549
SchI	GAGTC	2 cut(s)	194, 517
ScrFI	CCNGG	4 cut(s)	547, 548, 876, 1127
SduI	GDGCHC	4 cut(s)	18, 28, 718, 1031
SexAI	ACCWGGT	1 cut(s)	874
SfaNI	GCATC	3 cut(s)	422, 959, 1048
SfcI	CTRYAG	3 cut(s)	417, 501, 1074
SinI	GGWCC	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	21, 119
SrfI	GCCCGGGC	1 cut(s)	548
Sse9I	AATT	8 cut(s)	338, 357, 406, 604, 653, 999, 1092, 1177
SsiI	CCGC	3 cut(s)	21, 285, 423
SspMI	CTAG	4 cut(s)	344, 696, 936, 1122
StyD4I	CCNGG	4 cut(s)	545, 546, 874, 1125
StyI	CCWWGG	2 cut(s)	246, 318
TaaI	ACNGT	2 cut(s)	505, 1026
TaiI	ACGT	3 cut(s)	807, 924, 1050
TaqI	TCGA	4 cut(s)	273, 718, 881, 907
TasI	AATT	8 cut(s)	338, 357, 406, 604, 653, 999, 1092, 1177
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	5 cut(s)	270, 429, 634, 948, 961
Tru1I	TTAA	4 cut(s)	356, 861, 1091, 1164
Tru9I	TTAA	4 cut(s)	356, 861, 1091, 1164
TscAI	CASTG	3 cut(s)	448, 958, 1117
TseFI	GTSAC	2 cut(s)	925, 1037
TseI	GCWGC	5 cut(s)	419, 585, 792, 1076, 1150
Tsp45I	GTSAC	2 cut(s)	925, 1037
TspDTI	ATGAA	9 cut(s)	45, 49, 103, 178, 228, 342, 386, 877, 1154
TspGWI	ACGGA	1 cut(s)	533
TspMI	CCCGGG	1 cut(s)	546
TspRI	CASTG	3 cut(s)	448, 958, 1117
Tth111I	GACNNNGTC	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	1008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XmaI	CCCGGG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	1106
XspI	CTAG	4 cut(s)	344, 696, 936, 1122
ZraI	GACGTC	2 cut(s)	805, 922
Zsp2I	ATGCAT	2 cut(s)	415, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.