Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005051.1

Orthogroup ID

OG0009185

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1770

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005051.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

gctgaagtagtttggggtcaagatggtactgaaaggaggaaagaaatggtgcctgcaatgttcatattcggagactctctgattgacaatggcaacaacaacaacctcccttcatttgccaaggccaactatcccccctatggaatcgatttcaatggcggaccaactggtcgttttagcaatggttacaccatggttgatgaaatagctgaattgctaggacttcctttaattcctgcgtactctgaagcttctggagatcaagtgcttcatggtgtcaattatgcatctgcagccgctggaatccttgatatcactggcagaaactttgtgggtcgcataccctttggtcaacaaataagcaacttccagactacagttgatcagataacggagactctgggtgcagatgatgttgcccgggccattgcaaagtgcatattctttgttggaatgggcagcaatgactacctaaacaattaccttatgcccaactataacaccaagaatcaatacaatgctcaacaatttgctgatctcttggctcaacaatacactcagcaactcactgtaagaacacctctctttgatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

198

Amino Acids

21.74

Weight (kDa)

4.38

Isoelectric Point (pI)

21.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71691 AT1G71691 AT1G71691
fragaria_vesca	FvH4_5g32890 FvH4_5g32890 FvH4_5g32890
malus_domestica	MD10G1100600.v1.1 MD15G1400200.v1.1
prunus_persica	Prupe.1G547600_v2.0.a1
pyrus_communis	pycom15g35880
rosa_chinensis	RchiOBHm_Chr7g0230861
rosa_laevigata	RLG00000001457
rosa_multiflora	Rmu_sc0000551.1_g000018 Rmu_sc0005051.1_g000001 Rmu_sc0010407.1_g000023
rosa_roxburghii	Rroxscaffold_3G00229740
rosa_rugosa	Rorug07G0262600
rosa_samantha	Rh7AG415800 Rh7CG434800 Rh7DG410300
rosa_wichuraiana	Rw7G034280 Rw7G034440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	2 cut(s)	159, 297
AcuI	CTGAAG	2 cut(s)	24, 267
AfaI	GTAC	2 cut(s)	28, 242
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	209, 251
AluI	AGCT	2 cut(s)	209, 251
Alw26I	GTCTC	2 cut(s)	66, 389
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	420
AoxI	GGCC	2 cut(s)	123, 423
ApeKI	GCWGC	2 cut(s)	293, 459
AspS9I	GGNCC	2 cut(s)	161, 423
AsuC2I	CCSGG	2 cut(s)	421, 422
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	305, 471
BccI	CCATC	1 cut(s)	17
BclI	TGATCA	2 cut(s)	382, 589
BcnI	CCSGG	2 cut(s)	421, 422
BcoDI	GTCTC	2 cut(s)	66, 389
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	291, 375
BisI	GCNGC	3 cut(s)	294, 297, 460
BlsI	GCNGC	3 cut(s)	295, 298, 461
Bme1390I	CCNGG	2 cut(s)	421, 422
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	161, 423
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	421, 422
BmsI	GCATC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	2 cut(s)	421, 422
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	120, 192, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	172, 322
Bse3DI	GCAATG	4 cut(s)	63, 187, 426, 469
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	120, 192, 420
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	4 cut(s)	63, 187, 426, 469
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	2 cut(s)	172, 322
BseXI	GCAGC	2 cut(s)	305, 471
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	125, 425
BshNI	GGYRCC	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	66, 389
BsnI	GGCC	2 cut(s)	125, 425
BsoBI	CYCGRG	1 cut(s)	420
Bsp143I	GATC	4 cut(s)	259, 382, 535, 589
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	159, 297
BspANI	GGCC	2 cut(s)	125, 425
BspCNI	CTCAG	1 cut(s)	571
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	4 cut(s)	63, 187, 426, 469
BsrI	ACTGG	2 cut(s)	172, 322
BssECI	CCNNGG	3 cut(s)	120, 192, 420
BssMI	GATC	4 cut(s)	259, 382, 535, 589
BssT1I	CCWWGG	2 cut(s)	120, 192
Bst4CI	ACNGT	2 cut(s)	379, 571
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	262, 385, 538, 592
BstMAI	GTCTC	2 cut(s)	66, 389
BstMBI	GATC	4 cut(s)	259, 382, 535, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	419, 420
BstSFI	CTRYAG	2 cut(s)	291, 375
BstV1I	GCAGC	2 cut(s)	305, 471
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	125, 425
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	315, 567
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	161, 423
Cfr9I	CCCGGG	1 cut(s)	420
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	27, 241
CviAII	CATG	2 cut(s)	193, 272
CviJI	RGCY	6 cut(s)	125, 209, 251, 296, 425, 545
CviKI_1	RGCY	6 cut(s)	125, 209, 251, 296, 425, 545
CviQI	GTAC	2 cut(s)	27, 241
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	4 cut(s)	261, 384, 537, 591
DpnII	GATC	4 cut(s)	259, 382, 535, 589
DrdI	GACNNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	120, 192
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	24, 267
Eco88I	CYCGRG	1 cut(s)	420
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	120, 192
EcoT22I	ATGCAT	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	120, 192
FaeI	CATG	2 cut(s)	196, 275
FaiI	YATR	9 cut(s)	65, 141, 194, 273, 285, 341, 440, 488, 498
FatI	CATG	2 cut(s)	192, 271
FbaI	TGATCA	2 cut(s)	382, 589
Fnu4HI	GCNGC	3 cut(s)	294, 297, 460
Fsp4HI	GCNGC	3 cut(s)	294, 297, 460
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	3 cut(s)	294, 297, 460
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	125, 425
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	2 cut(s)	196, 275
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	5 cut(s)	74, 144, 303, 397, 508
HpaII	CCGG	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	4 cut(s)	71, 81, 247, 387
Hpy188III	TCNNGA	3 cut(s)	20, 255, 370
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	379, 571
HpyCH4V	TGCA	6 cut(s)	56, 287, 293, 407, 431, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	2 cut(s)	196, 275
Ksp22I	TGATCA	2 cut(s)	382, 589
Kzo9I	GATC	4 cut(s)	259, 382, 535, 589
LpnPI	CCDG	9 cut(s)	66, 153, 240, 249, 285, 303, 383, 386, 434
Lsp1109I	GCAGC	2 cut(s)	305, 471
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	4 cut(s)	261, 384, 537, 591
MboI	GATC	4 cut(s)	259, 382, 535, 589
MluCI	AATT	5 cut(s)	212, 231, 280, 478, 527
MlyI	GAGTC	2 cut(s)	68, 391
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	3 cut(s)	30, 116, 591
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	421, 422
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	2 cut(s)	421, 422
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	259, 382, 535, 589
NlaIII	CATG	2 cut(s)	196, 275
NlaIV	GGNNCC	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	144, 303, 508
PkrI	GCNGC	3 cut(s)	295, 298, 461
PleI	GAGTC	2 cut(s)	68, 391
PpsI	GAGTC	2 cut(s)	68, 391
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	161, 423
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	28, 242
RsaNI	GTAC	2 cut(s)	27, 241
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	294, 297, 460
Sau3AI	GATC	4 cut(s)	259, 382, 535, 589
Sau96I	GGNCC	2 cut(s)	161, 423
SchI	GAGTC	2 cut(s)	68, 391
ScrFI	CCNGG	2 cut(s)	421, 422
SetI	ASST	6 cut(s)	108, 211, 253, 474, 486, 583
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	2 cut(s)	291, 375
SinI	GGWCC	1 cut(s)	161
SmaI	CCCGGG	1 cut(s)	422
SrfI	GCCCGGGC	1 cut(s)	422
Sse9I	AATT	5 cut(s)	212, 231, 280, 478, 527
SsiI	CCGC	2 cut(s)	159, 297
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	419, 420
StyI	CCWWGG	2 cut(s)	120, 192
TaaI	ACNGT	2 cut(s)	379, 571
TaqI	TCGA	1 cut(s)	147
TasI	AATT	5 cut(s)	212, 231, 280, 478, 527
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	144, 303, 508
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	322, 574
TseI	GCWGC	2 cut(s)	293, 459
TspDTI	ATGAA	4 cut(s)	52, 102, 216, 260
TspGWI	ACGGA	1 cut(s)	407
TspMI	CCCGGG	1 cut(s)	420
TspRI	CASTG	2 cut(s)	322, 574
VpaK11BI	GGWCC	1 cut(s)	161
XmaI	CCCGGG	1 cut(s)	420
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.