Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Reverse (-)

26952545 .. 26955127

Gene Structure 2583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71692.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTCGTGGAAAGATTCAGCTTAAGAGGATTGAGAACCCGGTTCACAGACAAGTGACTTTTTGCAAGAGGAGAACTGGTCTTCTCAAGAAGGCTAAGGAGCTCTCTGTGCTCTGTGATGCCGAGATCGGTGTTGTGATCTTCTCTCCTCAGGGCAAGCTCTTTGAGCTCGCTACTAAAGGAACAATGGAGGGAATGATTGATAAGTACATGAAGTGTACTGGTGGTGGTCGTGGTTCTTCTTCTGCTACTTTTACTGCTCAAGAACAACTTCAACCACCAAATCTTGATCCGAAAGATGAGATCAACGTGCTTAAGCAAGAGATTGAGATGCTTCAGAAAGGGATAAGCTATATGTTTGGAGGAGGAGATGGGGCTATGAATCTTGAAGAACTTCTTTTGCTTGAGAAGCATCTTGAGTATTGGATTTCTCAGATTCGCTCTGCTAAGATGGATGTTATGCTTCAAGAAATTCAGTCATTGAGGAACAAGGAAGGAGTCCTCAAAAACACCAACAAGTATCTCCTCGAAAAGATAGAGGAAAACAACAATAGCATATTAGATGCTAACTTCGCAGTCATGGAGACAAACTATTCCTATCCGCTAACAATGCCAAGTGAAATATTTCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

211

Amino Acids

23.92

Weight (kDa)

6.76

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	1.8e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	99 - 180	2.2e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	209, 220
AflII	CTTAAG	2 cut(s)	23, 314
AgsI	TTSAA	3 cut(s)	275, 389, 467
AluBI	AGCT	5 cut(s)	22, 103, 160, 169, 351
AluI	AGCT	5 cut(s)	22, 103, 160, 169, 351
Alw21I	GWGCWC	3 cut(s)	105, 114, 171
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	471
Asp700I	GAANNNNTTC	3 cut(s)	270, 393, 624
AsuC2I	CCSGG	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	150
BanII	GRGCYC	2 cut(s)	105, 171
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	3 cut(s)	105, 114, 171
BccI	CCATC	2 cut(s)	365, 445
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	634
BfrI	CTTAAG	2 cut(s)	23, 314
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	4 cut(s)	109, 321, 421, 553
BpiI	GAAGAC	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	4 cut(s)	71, 246, 425, 437
BpuMI	CCSGG	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bse1I	ACTGG	2 cut(s)	82, 226
Bse21I	CCTNAGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	164, 446
BseNI	ACTGG	2 cut(s)	82, 226
BseRI	GAGGAG	5 cut(s)	85, 138, 378, 381, 515
BsiHKAI	GWGCWC	3 cut(s)	105, 114, 171
BsiSI	CCGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	105, 114, 171
Bsp143I	GATC	4 cut(s)	126, 138, 289, 303
BspACI	CCGC	1 cut(s)	602
BspCNI	CTCAG	2 cut(s)	163, 445
BspPI	GGATC	1 cut(s)	284
BspTI	CTTAAG	2 cut(s)	23, 314
BsrI	ACTGG	2 cut(s)	82, 226
BssMI	GATC	4 cut(s)	126, 138, 289, 303
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
BstAFI	CTTAAG	2 cut(s)	23, 314
BstC8I	GCNNGC	2 cut(s)	158, 171
BstDEI	CTNAG	4 cut(s)	96, 150, 432, 447
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	129, 141, 292, 306
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	4 cut(s)	126, 138, 289, 303
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 166, 409, 572, 610
BstSCI	CCNGG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	74
Bsu36I	CCTNAGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	158, 171
Csp6I	GTAC	2 cut(s)	208, 219
CviAII	CATG	2 cut(s)	211, 580
CviJI	RGCY	8 cut(s)	5, 22, 95, 103, 160, 169, 351, 377
CviKI_1	RGCY	8 cut(s)	5, 22, 95, 103, 160, 169, 351, 377
CviQI	GTAC	2 cut(s)	208, 219
DdeI	CTNAG	4 cut(s)	96, 150, 432, 447
DpnI	GATC	4 cut(s)	128, 140, 291, 305
DpnII	GATC	4 cut(s)	126, 138, 289, 303
Ecl136II	GAGCTC	2 cut(s)	103, 169
Eco24I	GRGCYC	2 cut(s)	105, 171
Eco53kI	GAGCTC	2 cut(s)	103, 169
Eco57I	CTGAAG	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	150
EcoICRI	GAGCTC	2 cut(s)	103, 169
EcoT38I	GRGCYC	2 cut(s)	105, 171
FaeI	CATG	2 cut(s)	214, 583
FaiI	YATR	7 cut(s)	212, 354, 356, 380, 461, 557, 581
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 381, 413
FatI	CATG	2 cut(s)	210, 579
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	2 cut(s)	105, 171
FspBI	CTAG	1 cut(s)	634
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	2 cut(s)	214, 583
HinfI	GANTC	4 cut(s)	16, 382, 436, 498
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	46, 219
Hpy188I	TCNGA	3 cut(s)	294, 339, 435
Hpy188III	TCNNGA	6 cut(s)	88, 263, 287, 386, 416, 467
Hpy8I	GTNNAC	2 cut(s)	46, 219
HpyAV	CCTTC	2 cut(s)	85, 488
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 166, 409, 572, 610
HpyF3I	CTNAG	4 cut(s)	96, 150, 432, 447
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	214, 583
Kzo9I	GATC	4 cut(s)	126, 138, 289, 303
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	54, 63, 137, 207
LweI	GCATC	4 cut(s)	109, 321, 421, 553
MaeI	CTAG	1 cut(s)	634
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	128, 140, 291, 305
MboI	GATC	4 cut(s)	126, 138, 289, 303
MboII	GAAGA	5 cut(s)	74, 133, 231, 234, 401
MhlI	GDGCHC	3 cut(s)	105, 114, 171
MluCI	AATT	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	507
MroXI	GAANNNNTTC	3 cut(s)	270, 393, 624
MseI	TTAA	2 cut(s)	24, 315
MspCI	CTTAAG	2 cut(s)	23, 314
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	109, 166, 409, 572, 610
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	4 cut(s)	126, 138, 289, 303
NlaIII	CATG	2 cut(s)	214, 583
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	55
PdmI	GAANNNNTTC	3 cut(s)	270, 393, 624
PfeI	GAWTC	3 cut(s)	16, 382, 436
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp124BI	GAGCTC	2 cut(s)	105, 171
RsaI	GTAC	2 cut(s)	209, 220
RsaNI	GTAC	2 cut(s)	208, 219
SacI	GAGCTC	2 cut(s)	105, 171
SaqAI	TTAA	2 cut(s)	24, 315
Sau3AI	GATC	4 cut(s)	126, 138, 289, 303
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	3 cut(s)	105, 114, 171
SetI	ASST	6 cut(s)	24, 105, 162, 171, 312, 353
SfaNI	GCATC	4 cut(s)	109, 321, 421, 553
SmlI	CTYRAG	6 cut(s)	23, 86, 261, 314, 404, 416
SmoI	CTYRAG	6 cut(s)	23, 86, 261, 314, 404, 416
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	602
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	1 cut(s)	634
SstI	GAGCTC	2 cut(s)	105, 171
StyD4I	CCNGG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	528
TasI	AATT	1 cut(s)	471
TatI	WGTACW	2 cut(s)	207, 218
TfiI	GAWTC	3 cut(s)	16, 382, 436
Tru1I	TTAA	2 cut(s)	24, 315
Tru9I	TTAA	2 cut(s)	24, 315
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	227, 395
Vha464I	CTTAAG	2 cut(s)	23, 314
XapI	RAATTY	1 cut(s)	471
XmnI	GAANNNNTTC	3 cut(s)	270, 393, 624
XspI	CTAG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.