Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Reverse (-)

27872383 .. 27882016

Gene Structure 9634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1216000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTCGTGGAAAGGTTCAGATGAAGAGGATCGAGAACATGGTGCACAGGCAGGTTACTTTCTGCAAGCGCCGGGCAGGGCTTCTGAAGAAGGCTAAGGAGCTGTCTGTGCTGTGTGATGCTGAGATTGGAGTTTTCATTTTCTCCTCCCATGGAAAGCTCTTTGAACTAGCCACCAAAGGAAGCATGCAAGGGCTTATTGAGAGGTACATGAAGATGAAGTCCACCCGAGCACCTCAGACAGAGCAAACCATGGAAACACAAACTCTGGATGCGAAAAAGGAGATTAACTGGATGAAACAGGAGATTGAAATACTACAAAAAGGTCTCAGGTATATGTTTGATGGAGGTGCCGGGACAATGACTTTGGATGAACTACAAGTGCTTGAAAAACATCTTGAAACGTGGATTTATCATGTCCGCTCGGCAAAGATGGACATTTTGTTCCAAGAGATCCAGCTGTTGAGGAACTCGGAAGGAATTCTGGCAGCTGCAAATAAGTTTCTTCAAGATAAGATTGAAGTGAACACTGGACCTAATGACTTTATGCCAATAGCAACTGACAACACATATCCACTAACCATACCAAATGGTATATATGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

203

Amino Acids

23.22

Weight (kDa)

8.77

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	2.8e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 174	2e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	423
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	38, 448
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	167, 311, 389, 401, 509, 521
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	103, 160, 460, 491
AluI	AGCT	4 cut(s)	103, 160, 460, 491
Alw21I	GWGCWC	2 cut(s)	48, 235
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	38, 448
Ama87I	CYCGRG	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	488, 491
ApoI	RAATTY	1 cut(s)	480
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	533
AsuC2I	CCSGG	2 cut(s)	74, 355
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	350
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	48, 235
BbvI	GCAGC	2 cut(s)	478, 500
BccI	CCATC	2 cut(s)	338, 427
BcnI	CCSGG	2 cut(s)	74, 355
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	489, 492
BlsI	GCNGC	2 cut(s)	490, 493
Bme1390I	CCNGG	2 cut(s)	74, 355
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	74, 355
BmsI	GCATC	2 cut(s)	109, 262
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	2 cut(s)	74, 355
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	151, 252
Bse1I	ACTGG	2 cut(s)	296, 535
BseDI	CCNNGG	2 cut(s)	151, 252
BseGI	GGATG	3 cut(s)	277, 300, 376
BseMII	CTCAG	3 cut(s)	114, 251, 343
BseNI	ACTGG	2 cut(s)	296, 535
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	478, 500
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	2 cut(s)	48, 235
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	73, 354
BslFI	GGGAC	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	48, 235
Bsp143I	GATC	2 cut(s)	30, 453
Bsp19I	CCATGG	2 cut(s)	151, 252
BspACI	CCGC	1 cut(s)	421
BspCNI	CTCAG	3 cut(s)	115, 250, 342
BspLI	GGNNCC	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	38, 448
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	296, 535
BssECI	CCNNGG	2 cut(s)	151, 252
BssMI	GATC	2 cut(s)	30, 453
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	151, 252
Bst2BI	CACGAG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	68, 188
BstDEI	CTNAG	4 cut(s)	96, 123, 237, 329
BstDSI	CCRYGG	2 cut(s)	151, 252
BstF5I	GGATG	3 cut(s)	277, 300, 376
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	33, 456
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	30, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	72, 353
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	478, 500
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BtgI	CCRYGG	2 cut(s)	151, 252
BtsCI	GGATG	3 cut(s)	277, 300, 376
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	68, 188
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	6 cut(s)	40, 152, 187, 211, 253, 416
CviJI	RGCY	9 cut(s)	5, 82, 95, 103, 160, 173, 196, 460, 491
CviKI_1	RGCY	9 cut(s)	5, 82, 95, 103, 160, 173, 196, 460, 491
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	4 cut(s)	96, 123, 237, 329
DpnI	GATC	2 cut(s)	32, 455
DpnII	GATC	2 cut(s)	30, 453
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	151, 252
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	151, 252
ErhI	CCWWGG	2 cut(s)	151, 252
FaeI	CATG	6 cut(s)	43, 155, 190, 214, 256, 419
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	6 cut(s)	39, 151, 186, 210, 252, 415
Fnu4HI	GCNGC	2 cut(s)	489, 492
FokI	GGATG	3 cut(s)	284, 307, 383
Fsp4HI	GCNGC	2 cut(s)	489, 492
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	489, 492
HaeII	RGCGCY	1 cut(s)	73
HapII	CCGG	2 cut(s)	73, 354
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	43, 155, 190, 214, 256, 419
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HpaII	CCGG	2 cut(s)	73, 354
Hpy166II	GTNNAC	3 cut(s)	46, 225, 526
Hpy188I	TCNGA	4 cut(s)	21, 87, 240, 475
Hpy188III	TCNNGA	4 cut(s)	34, 269, 398, 509
Hpy8I	GTNNAC	3 cut(s)	46, 225, 526
HpyAV	CCTTC	2 cut(s)	85, 470
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	4 cut(s)	46, 66, 190, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	4 cut(s)	96, 123, 237, 329
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	6 cut(s)	43, 155, 190, 214, 256, 419
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	30, 453
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	478, 500
LweI	GCATC	2 cut(s)	109, 262
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	32, 455
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	2 cut(s)	30, 453
MboII	GAAGA	4 cut(s)	37, 100, 226, 497
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	48, 235
MluCI	AATT	1 cut(s)	480
MnlI	CCTC	6 cut(s)	21, 157, 198, 246, 341, 459
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	2 cut(s)	460, 491
MspI	CCGG	2 cut(s)	73, 354
MspR9I	CCNGG	2 cut(s)	74, 355
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	2 cut(s)	74, 355
NcoI	CCATGG	2 cut(s)	151, 252
NdeII	GATC	2 cut(s)	30, 453
NlaIII	CATG	6 cut(s)	43, 155, 190, 214, 256, 419
NlaIV	GGNNCC	1 cut(s)	352
NmeAIII	GCCGAG	1 cut(s)	404
NspI	RCATGY	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	480
PkrI	GCNGC	2 cut(s)	490, 493
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	453
PvuII	CAGCTG	2 cut(s)	460, 491
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	489, 492
Sau3AI	GATC	2 cut(s)	30, 453
Sau96I	GGNCC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	74, 355
SduI	GDGCHC	2 cut(s)	48, 235
SfaNI	GCATC	2 cut(s)	109, 262
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	72, 353
StyI	CCWWGG	2 cut(s)	151, 252
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	2 cut(s)	488, 491
TspDTI	ATGAA	6 cut(s)	38, 127, 227, 233, 311, 387
TspRI	CASTG	1 cut(s)	535
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.