Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Reverse (-)

24675985 .. 24679318

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0262300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2916 bp

ATGGCAGAAAGTGCAGTCACCTTTTTGGTTTACAGGCTCACGACATTACTCGAAGAAGAGGCGGAACTCTTGTCAGGGATCCGAGAACAGGTCGAGGACCTGGTTGATGAATTGGAGCGCATCAAGGCCTTCTTAGCTAATGCAAAGGAAGACAGCAATCCTCAGCTCCAAGTGCGGGTTAAACAAGTCAGAGATGTAGCTCATGAAATGGAAGATGCCCTTGATAAATTCAGGCTTTTCCATTCACACGATCACGGTCATGGATTCCGAGCTTCCCTTCATAAGCTTTCTTGTATCATCAAGAAATGGAAAACTAAGCATCAAATTTCTGCTGGTATTCAAAGAATAAACTCAAAAGTCAAAAACCTCTACGAGGGACATGAGAGATACAAACTTGTTGACCAAGCTGGCTCCAGCTCTGCTCGTCTGGTTCAGCGCCACAAGTTAGATCAAGGGGATGCCCTTTTACTGGAAGAGGCTGATCTTGTGGCAATTGGCGAGCGCAAAAAGCAACTGATTCAATTGCTTATGAAGGAAGACACTAGACGCCAGGTGGTTCCAGTAGTTGGGATGGGTGGACTGGGGAAAACTACCTTGGTAAAGCAAGTCTACGAGGATCCAAAAGTTCAGAAACGTTTCAAGGTACATGCTTGGATCACTGTTTCTCGATCATTCAAGATAAATCAGCTCCTAAGACACATGATCAATAATATCTTCAAAGTTATCCAGAAACCGGTTCCTGAAGATGAAGAAGTTGAAACCATGGACGACAACCAGCTAAGAGAGAGAATAAAAAATTTGCTGCAGAATAGTAGGTACCTGATTGTTCTTGATGGTATATGGCACATACCGGACTGGGATGCCATCAATCATGTAATGCCGAACAACAATCGTGGTAGTCGAGTAATGCTCACTACTCGATATGTTAATGTAGCCTCTGCCTCTTGCTTGGGGAACCATGACATGTTCTACCGTTTAGAGCCCTTATCTCTGGAAGATTCATGGACTCTTTTGTGCAGGAAGACATTTCATGGAGAGTCATGCCCACCAAATTTGGAGGAAATTTGTCGATGCATCCTGATGAAATGCGAGGGACTGCCCCTTGCAATTGTGGCCATCAGCGCTGTACTAGCTTTAAAAGACAAGAGAAATGTGGACGATTGGGCTGCTGTTTCTGGCAGTATTGGAGCTGAAATAGAAGGAAATGATCAACTTGATAACATGAAAAAATTGCTGTATCTCAGTTACAGTGATTTACCATACCATCTGAAACCGTGTTTCTTGTATCTGAGCATCTTTCCTGATCTCTACAAAATTGAGCATATGAGATTGATTCGGTTATGGTTAGCTGAAGGATTTGTTATTGGAAAAGAGGGAAGGACACCAGAAGAAGTTGCAGAGAGTTACCTTAGAGAGTTATTGGACAGAAGTTTGATTCAAGCAGCAGAAACATCAACTGATGGGAGAGTTAAATCATATCGCATCCATGATCTTTTACGGGAGATTGTCGTTTTGAAGTCTAGAGAGCAAAATTTTGCAGCAATAGAAAAAGAGCACGGTACAATGTGGTCTGAGAAAGTTCGACGACTATCAATAGTTAACACACTGCAGAATGTACATCAAAAGAGGACACCATCCCGACTTCGTTCTTTGCTCCTTTTTGGGATAGAAGATTCACTTACTGATTTTCCCATACCAAAATTGTTTCCTACCGGTCTTCAGTTGCTTACTGTATTAGACTTACAAGGTGCACATCTGGATATGTTTCCGAGTGAGGTTGTCAAGCTTATTCTTCTCAAGTACCTTAGCTTGAGGCATACAAAGGTGAAACAAATTCCAAGCTCCATCAAGAAGCTACAAAACCTAGAGACCTTGGACCTCAAACACTCGCATGTTGTTGAATTACCAGCTGAGATTTTGAATCTCAAGCGACTTCGTCATCTTCTGGTTTATCGTTATGAGGTTGAGTCATATTTACGATTTAATGCCAGAAAAGGAGTTAAGATTCCGGCAGGGATAAGTAGCTTGCAATCGCTCCAAAAGCTCTGCTTTATAGAGGCAAATCAATACAGTGGTGCTTTAATGGCAGAGCTTGGGAGAATGAAGCAACTAAGGAGGTTAGGCATTTATAAGTTGAGAGAAGAAGATGGGGCCACCTTATGCTCATCCGTCCAAAATATGACCAGCCTTCGCTCGTTGTCTGTATTTTCAGCAGGGAAACAGACGATAATTGATCTTAGCCACATTTCTAGTGCTCCTCCATTTCTTCAGCGGCTATACTTGGCAGGGCGTTTAGAAAACTTACCCCGCTGGATCTCTTCTCTTCAAAACCTGGTCAGACTGTTTCTAAAATGGAGTCGGCTGAAGGAGGATCCTCTAGTACATCTTCAGAGTTTGCCAAACCTGGTACATCTTGAACTTTTACAAGTTTATGATGGAGAGAGCTTGCACTTTGAGGCAGGAGGGTTTCCAAGTCTGAAGTTATTAGGTATTGATAAATTGGATGAACTGCAATTGGTAACCATAGAGGAGGGAGCAATGCCTTGTCTAGAAAAGCTAATTATCCAGCGCTGCAAATGGTTGAAGAAGGTCCCGTCTGGCATTGAACATTTAACCAATTTAAAGCTGCTTGAGTTTTTCGATATGCCAGATGAATTAATCATGCCACTACATCCAGATGGTGGAGAAGATCACTGGAAAGTCGCTCATGTTCCAGCTGTTTATCATTCCTATTGGAGAGATGATGGGTGGGATGTCTACTCATTAGTCAATGATGTGGAGAGTTTTAATTCGGGTACTTCTGCCGTGAGGAGGCTCGAACGTGCGGATAGAATTGAGGAAGTCTGGTTCCTGTTGGAGTCGATGGTTGGAAGGTTTGGCTTGAGGTCTGAGATAGTCACCGACTCTTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

971

Amino Acids

111.6

Weight (kDa)

7.89

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 85	9.1e-20	Rx N-terminal domain
NB-ARC	PF00931	168 - 347	2.5e-42	NB-ARC domain
nSTAND6	PF25201	170 - 263	3.8e-06	Novel STAND NTPase 6
WHD_DRP	PF23559	432 - 503	1.1e-21	Disease resistance protein Winged helix domain
LRR_14	PF23598	548 - 877	1.5e-49	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2130
Acc65I	GGTACC	1 cut(s)	816
AccB1I	GGYRCC	1 cut(s)	816
AccB7I	CCANNNNNTGG	2 cut(s)	566, 2681
AccI	GTMKAC	2 cut(s)	609, 2757
AciI	CCGC	5 cut(s)	62, 175, 2272, 2308, 2825
AclI	AACGTT	1 cut(s)	634
AclWI	GGATC	8 cut(s)	73, 86, 611, 624, 662, 2321, 2366, 2379
AcoI	YGGCCR	1 cut(s)	1113
AcsI	RAATTY	7 cut(s)	227, 324, 796, 1051, 1062, 1531, 1833
AcuI	CTGAAG	7 cut(s)	762, 1371, 1703, 2252, 2372, 2384, 2498
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	9 cut(s)	645, 818, 1128, 1561, 1617, 1802, 2382, 2409, 2797
AfeI	AGCGCT	2 cut(s)	1123, 2570
AfiI	CCNNNNNNNGG	8 cut(s)	88, 175, 373, 469, 566, 733, 2681, 2811
AflIII	ACRYGT	1 cut(s)	963
AgeI	ACCGGT	2 cut(s)	733, 1712
AjnI	CCWGG	4 cut(s)	99, 549, 2331, 2403
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AloI	GAACNNNNNNTCC	2 cut(s)	2831, 2863
Alw21I	GWGCWC	3 cut(s)	1557, 1753, 2257
Alw26I	GTCTC	1 cut(s)	1862
Alw44I	GTGCAC	1 cut(s)	1749
AlwI	GGATC	8 cut(s)	73, 86, 611, 624, 662, 2321, 2366, 2379
Aor51HI	AGCGCT	2 cut(s)	1123, 2570
AoxI	GGCC	3 cut(s)	126, 1113, 2151
ApaLI	GTGCAC	1 cut(s)	1749
ApeKI	GCWGC	6 cut(s)	802, 1166, 1442, 1538, 2571, 2626
ApoI	RAATTY	7 cut(s)	227, 324, 796, 1051, 1062, 1531, 1833
AseI	ATTAAT	1 cut(s)	2657
AsiGI	ACCGGT	2 cut(s)	733, 1712
Asp700I	GAANNNNTTC	1 cut(s)	635
Asp718I	GGTACC	1 cut(s)	816
AspLEI	GCGC	5 cut(s)	120, 438, 504, 1124, 2571
AspS9I	GGNCC	4 cut(s)	97, 1876, 2151, 2590
AsuHPI	GGTGA	3 cut(s)	10, 1837, 2890
AvaII	GGWCC	3 cut(s)	97, 1876, 2590
BaeGI	GKGCMC	1 cut(s)	1753
BalI	TGGCCA	1 cut(s)	1115
BamHI	GGATCC	3 cut(s)	78, 616, 2371
BanI	GGYRCC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	984
BbsI	GAAGAC	4 cut(s)	156, 543, 1028, 1709
Bbv12I	GWGCWC	3 cut(s)	1557, 1753, 2257
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	6 cut(s)	789, 1153, 1454, 1550, 2558, 2613
BceAI	ACGGC	1 cut(s)	2789
BcgI	CGANNNNNNTGC	2 cut(s)	1148, 1182
BciT130I	CCWGG	4 cut(s)	101, 551, 2333, 2405
BclI	TGATCA	2 cut(s)	702, 1207
BcoDI	GTCTC	1 cut(s)	1862
BfaI	CTAG	7 cut(s)	543, 1130, 1521, 1865, 2250, 2378, 2549
BfmI	CTRYAG	2 cut(s)	803, 1607
BfoI	RGCGCY	3 cut(s)	439, 1125, 2572
BisI	GCNGC	7 cut(s)	803, 1167, 1443, 1539, 2273, 2572, 2627
BlsI	GCNGC	7 cut(s)	804, 1168, 1444, 1540, 2274, 2573, 2628
Bme1390I	CCNGG	4 cut(s)	101, 551, 2333, 2405
Bme18I	GGWCC	3 cut(s)	97, 1876, 2590
BmgT120I	GGNCC	4 cut(s)	97, 1876, 2151, 2590
BmrFI	CCNGG	4 cut(s)	101, 551, 2333, 2405
BmrI	ACTGGG	2 cut(s)	590, 865
BmsI	GCATC	9 cut(s)	129, 205, 328, 448, 850, 1061, 1083, 1302, 1491
BmuI	ACTGGG	2 cut(s)	590, 865
BpiI	GAAGAC	4 cut(s)	156, 543, 1028, 1709
BplI	GAGNNNNNCTC	2 cut(s)	894, 926
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	2 cut(s)	162, 1805
BpuEI	CTTGAG	5 cut(s)	1781, 1831, 1910, 2651, 2902
BsaHI	GRCGYC	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	1862
BsaJI	CCNNGG	3 cut(s)	594, 762, 1872
BsaWI	WCCGGW	3 cut(s)	733, 850, 1712
Bsc4I	CCNNNNNNNGG	8 cut(s)	88, 175, 373, 469, 566, 733, 2681, 2811
Bse118I	RCCGGY	2 cut(s)	733, 1712
Bse1I	ACTGG	6 cut(s)	474, 560, 585, 860, 2699, 2911
Bse3DI	GCAATG	1 cut(s)	2544
BseBI	CCWGG	4 cut(s)	101, 551, 2333, 2405
BseDI	CCNNGG	3 cut(s)	594, 762, 1872
BseLI	CCNNNNNNNGG	8 cut(s)	88, 175, 373, 469, 566, 733, 2681, 2811
BseMI	GCAATG	1 cut(s)	2544
BseMII	CTCAG	6 cut(s)	176, 1255, 1280, 1563, 1902, 2880
BseNI	ACTGG	6 cut(s)	474, 560, 585, 860, 2699, 2911
BseRI	GAGGAG	3 cut(s)	2247, 2543, 2824
BseSI	GKGCMC	1 cut(s)	1753
BseXI	GCAGC	6 cut(s)	789, 1153, 1454, 1550, 2558, 2613
BsgI	GTGCAG	2 cut(s)	33, 1036
BshFI	GGCC	3 cut(s)	128, 1115, 2153
BshNI	GGYRCC	1 cut(s)	816
BshTI	ACCGGT	2 cut(s)	733, 1712
BsiHKAI	GWGCWC	3 cut(s)	1557, 1753, 2257
BsiSI	CCGG	4 cut(s)	734, 851, 1713, 2009
BslFI	GGGAC	3 cut(s)	390, 1107, 2576
BslI	CCNNNNNNNGG	8 cut(s)	88, 175, 373, 469, 566, 733, 2681, 2811
BsmAI	GTCTC	1 cut(s)	1862
BsmFI	GGGAC	3 cut(s)	390, 1107, 2576
BsnI	GGCC	3 cut(s)	128, 1115, 2153
Bso31I	GGTCTC	1 cut(s)	1862
Bsp1286I	GDGCHC	4 cut(s)	984, 1557, 1753, 2257
Bsp1407I	TGTACA	1 cut(s)	1615
Bsp19I	CCATGG	1 cut(s)	762
BspACI	CCGC	5 cut(s)	62, 175, 2272, 2308, 2825
BspANI	GGCC	3 cut(s)	128, 1115, 2153
BspCNI	CTCAG	6 cut(s)	175, 1254, 1281, 1564, 1903, 2881
BspHI	TCATGA	1 cut(s)	202
BspMAI	CTGCAG	2 cut(s)	807, 1611
BspPI	GGATC	8 cut(s)	73, 86, 611, 624, 662, 2321, 2366, 2379
BspT107I	GGYRCC	1 cut(s)	816
BspTNI	GGTCTC	1 cut(s)	1862
BsrDI	GCAATG	1 cut(s)	2544
BsrFI	RCCGGY	2 cut(s)	733, 1712
BsrGI	TGTACA	1 cut(s)	1615
BsrI	ACTGG	6 cut(s)	474, 560, 585, 860, 2699, 2911
BssAI	RCCGGY	2 cut(s)	733, 1712
BssECI	CCNNGG	3 cut(s)	594, 762, 1872
BssNI	GRCGYC	1 cut(s)	547
BssT1I	CCWWGG	3 cut(s)	594, 762, 1872
Bst2UI	CCWGG	4 cut(s)	101, 551, 2333, 2405
Bst4CI	ACNGT	9 cut(s)	257, 661, 974, 1250, 1275, 1559, 1732, 2072, 2343
Bst6I	CTCTTC	4 cut(s)	51, 468, 2323, 2328
BstACI	GRCGYC	1 cut(s)	547
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	1615
BstC8I	GCNNGC	4 cut(s)	409, 500, 2027, 2447
BstDSI	CCRYGG	1 cut(s)	762
BstEII	GGTNACC	1 cut(s)	2518
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstH2I	RGCGCY	3 cut(s)	439, 1125, 2572
BstHHI	GCGC	5 cut(s)	120, 438, 504, 1124, 2571
BstMAI	GTCTC	1 cut(s)	1862
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 134, 172, 508, 1112, 1121, 1130, 2041, 2084
BstNI	CCWGG	4 cut(s)	101, 551, 2333, 2405
BstNSI	RCATGY	3 cut(s)	650, 967, 1895
BstPI	GGTNACC	1 cut(s)	2518
BstSCI	CCNGG	4 cut(s)	99, 549, 2331, 2403
BstSFI	CTRYAG	2 cut(s)	803, 1607
BstSLI	GKGCMC	1 cut(s)	1753
BstV1I	GCAGC	6 cut(s)	789, 1153, 1454, 1550, 2558, 2613
BstV2I	GAAGAC	4 cut(s)	156, 543, 1028, 1709
BstX2I	RGATCY	4 cut(s)	78, 616, 2313, 2371
BstYI	RGATCY	4 cut(s)	78, 616, 2313, 2371
BsuRI	GGCC	3 cut(s)	128, 1115, 2153
BtgI	CCRYGG	1 cut(s)	762
BtsI	GCAGTG	1 cut(s)	1604
BtsIMutI	CAGTG	5 cut(s)	657, 1255, 1604, 2077, 2692
Cac8I	GCNNGC	4 cut(s)	409, 500, 2027, 2447
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	5 cut(s)	120, 438, 504, 1124, 2571
Cfr10I	RCCGGY	2 cut(s)	733, 1712
Cfr13I	GGNCC	4 cut(s)	97, 1876, 2151, 2590
CseI	GACGC	1 cut(s)	555
CsiI	ACCWGGT	3 cut(s)	99, 2331, 2403
Csp6I	GTAC	9 cut(s)	644, 817, 1127, 1560, 1616, 1801, 2381, 2408, 2796
CspAI	ACCGGT	2 cut(s)	733, 1712
CspCI	CAANNNNNGTGG	4 cut(s)	874, 909, 1035, 1070
CviQI	GTAC	9 cut(s)	644, 817, 1127, 1560, 1616, 1801, 2381, 2408, 2796
DraI	TTTAAA	2 cut(s)	1137, 2622
EaeI	YGGCCR	1 cut(s)	1113
Eam1104I	CTCTTC	4 cut(s)	51, 468, 2323, 2328
EarI	CTCTTC	4 cut(s)	51, 468, 2323, 2328
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	3 cut(s)	594, 762, 1872
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	984
Eco31I	GGTCTC	1 cut(s)	1862
Eco47I	GGWCC	3 cut(s)	97, 1876, 2590
Eco47III	AGCGCT	2 cut(s)	1123, 2570
Eco57I	CTGAAG	7 cut(s)	762, 1371, 1703, 2252, 2372, 2384, 2498
Eco91I	GGTNACC	1 cut(s)	2518
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	97, 2590
EcoO65I	GGTNACC	1 cut(s)	2518
EcoRII	CCWGG	4 cut(s)	99, 549, 2331, 2403
EcoT14I	CCWWGG	3 cut(s)	594, 762, 1872
EcoT22I	ATGCAT	1 cut(s)	1076
EcoT38I	GRGCYC	1 cut(s)	984
ErhI	CCWWGG	3 cut(s)	594, 762, 1872
FalI	AAGNNNNNCTT	8 cut(s)	116, 148, 204, 236, 1662, 1694, 2033, 2065
FaqI	GGGAC	3 cut(s)	390, 1107, 2576
FauI	CCCGC	2 cut(s)	168, 2315
FauNDI	CATATG	1 cut(s)	1323
FbaI	TGATCA	2 cut(s)	702, 1207
FblI	GTMKAC	2 cut(s)	609, 2757
Fnu4HI	GCNGC	7 cut(s)	803, 1167, 1443, 1539, 2273, 2572, 2627
FriOI	GRGCYC	1 cut(s)	984
Fsp4HI	GCNGC	7 cut(s)	803, 1167, 1443, 1539, 2273, 2572, 2627
FspBI	CTAG	7 cut(s)	543, 1130, 1521, 1865, 2250, 2378, 2549
GlaI	GCGC	5 cut(s)	119, 437, 503, 1123, 2570
GluI	GCNGC	7 cut(s)	803, 1167, 1443, 1539, 2273, 2572, 2627
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	3 cut(s)	439, 1125, 2572
HaeIII	GGCC	3 cut(s)	128, 1115, 2153
HapII	CCGG	4 cut(s)	734, 851, 1713, 2009
HgaI	GACGC	1 cut(s)	555
HhaI	GCGC	5 cut(s)	120, 438, 504, 1124, 2571
Hin1I	GRCGYC	1 cut(s)	547
Hin6I	GCGC	5 cut(s)	118, 436, 502, 1122, 2569
HinP1I	GCGC	5 cut(s)	118, 436, 502, 1122, 2569
HincII	GTYRAC	2 cut(s)	400, 1600
HindII	GTYRAC	2 cut(s)	400, 1600
HindIII	AAGCTT	2 cut(s)	284, 1784
HpaI	GTTAAC	1 cut(s)	1600
HpaII	CCGG	4 cut(s)	734, 851, 1713, 2009
HphI	GGTGA	3 cut(s)	10, 1837, 2890
Hpy166II	GTNNAC	8 cut(s)	31, 400, 578, 610, 1156, 1600, 1751, 2758
Hpy8I	GTNNAC	8 cut(s)	31, 400, 578, 610, 1156, 1600, 1751, 2758
Hpy99I	CGWCG	1 cut(s)	1587
HpyCH4III	ACNGT	9 cut(s)	257, 661, 974, 1250, 1275, 1559, 1732, 2072, 2343
HpyCH4IV	ACGT	2 cut(s)	634, 2821
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 134, 172, 508, 1112, 1121, 1130, 2041, 2084
HpySE526I	ACGT	2 cut(s)	634, 2821
Hsp92I	GRCGYC	1 cut(s)	547
HspAI	GCGC	5 cut(s)	118, 436, 502, 1122, 2569
KpnI	GGTACC	1 cut(s)	820
Ksp22I	TGATCA	2 cut(s)	702, 1207
KspAI	GTTAAC	1 cut(s)	1600
Lsp1109I	GCAGC	6 cut(s)	789, 1153, 1454, 1550, 2558, 2613
LweI	GCATC	9 cut(s)	129, 205, 328, 448, 850, 1061, 1083, 1302, 1491
MabI	ACCWGGT	3 cut(s)	99, 2331, 2403
MaeI	CTAG	7 cut(s)	543, 1130, 1521, 1865, 2250, 2378, 2549
MaeII	ACGT	2 cut(s)	634, 2821
MaeIII	GTNAC	5 cut(s)	16, 1244, 1403, 2518, 2896
MfeI	CAATTG	4 cut(s)	492, 521, 1107, 2513
MflI	RGATCY	4 cut(s)	78, 616, 2313, 2371
MhlI	GDGCHC	4 cut(s)	984, 1557, 1753, 2257
MlsI	TGGCCA	1 cut(s)	1115
MluNI	TGGCCA	1 cut(s)	1115
MlyI	GAGTC	6 cut(s)	1000, 1046, 1976, 2365, 2867, 2897
MmeI	TCCRAC	2 cut(s)	2835, 2848
Mox20I	TGGCCA	1 cut(s)	1115
Mph1103I	ATGCAT	1 cut(s)	1076
MroXI	GAANNNNTTC	1 cut(s)	635
MscI	TGGCCA	1 cut(s)	1115
MslI	CAYNNNNRTG	4 cut(s)	258, 1079, 1890, 2676
Msp20I	TGGCCA	1 cut(s)	1115
MspA1I	CMGCKG	4 cut(s)	1910, 2272, 2310, 2717
MspI	CCGG	4 cut(s)	734, 851, 1713, 2009
MspR9I	CCNGG	4 cut(s)	101, 551, 2333, 2405
MunI	CAATTG	4 cut(s)	492, 521, 1107, 2513
MvaI	CCWGG	4 cut(s)	101, 551, 2333, 2405
MwoI	GCNNNNNNNGC	9 cut(s)	11, 134, 172, 508, 1112, 1121, 1130, 2041, 2084
NcoI	CCATGG	1 cut(s)	762
NdeI	CATATG	1 cut(s)	1323
NmuCI	GTSAC	2 cut(s)	16, 2896
NsiI	ATGCAT	1 cut(s)	1076
NspI	RCATGY	3 cut(s)	650, 967, 1895
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	128
PciI	ACATGT	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	8 cut(s)	264, 517, 998, 1333, 1435, 1673, 1921, 2005
PflFI	GACNNNGTC	1 cut(s)	1935
PflMI	CCANNNNNTGG	2 cut(s)	566, 2681
PinAI	ACCGGT	2 cut(s)	733, 1712
PkrI	GCNGC	7 cut(s)	804, 1168, 1444, 1540, 2274, 2573, 2628
PleI	GAGTC	6 cut(s)	1000, 1045, 1975, 2364, 2866, 2897
PpsI	GAGTC	6 cut(s)	1000, 1045, 1975, 2364, 2866, 2897
PpuMI	RGGWCCY	2 cut(s)	97, 2590
PscI	ACATGT	1 cut(s)	963
PshBI	ATTAAT	1 cut(s)	2657
PsiI	TTATAA	1 cut(s)	2130
Psp1406I	AACGTT	1 cut(s)	634
Psp5II	RGGWCCY	2 cut(s)	97, 2590
Psp6I	CCWGG	4 cut(s)	99, 549, 2331, 2403
PspEI	GGTNACC	1 cut(s)	2518
PspGI	CCWGG	4 cut(s)	99, 549, 2331, 2403
PspPI	GGNCC	4 cut(s)	97, 1876, 2151, 2590
PspPPI	RGGWCCY	2 cut(s)	97, 2590
PstI	CTGCAG	2 cut(s)	807, 1611
PsuI	RGATCY	4 cut(s)	78, 616, 2313, 2371
PsyI	GACNNNGTC	1 cut(s)	1935
PvuII	CAGCTG	2 cut(s)	1910, 2717
RsaI	GTAC	9 cut(s)	645, 818, 1128, 1561, 1617, 1802, 2382, 2409, 2797
RsaNI	GTAC	9 cut(s)	644, 817, 1127, 1560, 1616, 1801, 2381, 2408, 2796
RseI	CAYNNNNRTG	4 cut(s)	258, 1079, 1890, 2676
SatI	GCNGC	7 cut(s)	803, 1167, 1443, 1539, 2273, 2572, 2627
Sau96I	GGNCC	4 cut(s)	97, 1876, 2151, 2590
SchI	GAGTC	6 cut(s)	1000, 1046, 1976, 2365, 2867, 2897
ScrFI	CCNGG	4 cut(s)	101, 551, 2333, 2405
SduI	GDGCHC	4 cut(s)	984, 1557, 1753, 2257
SexAI	ACCWGGT	3 cut(s)	99, 2331, 2403
SfaNI	GCATC	9 cut(s)	129, 205, 328, 448, 850, 1061, 1083, 1302, 1491
SfcI	CTRYAG	2 cut(s)	803, 1607
SinI	GGWCC	3 cut(s)	97, 1876, 2590
SmiMI	CAYNNNNRTG	4 cut(s)	258, 1079, 1890, 2676
SmlI	CTYRAG	5 cut(s)	1796, 1810, 1925, 2630, 2881
SmoI	CTYRAG	5 cut(s)	1796, 1810, 1925, 2630, 2881
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	5 cut(s)	62, 175, 2272, 2308, 2825
SspMI	CTAG	7 cut(s)	543, 1130, 1521, 1865, 2250, 2378, 2549
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	4 cut(s)	99, 549, 2331, 2403
StyI	CCWWGG	3 cut(s)	594, 762, 1872
TaaI	ACNGT	9 cut(s)	257, 661, 974, 1250, 1275, 1559, 1732, 2072, 2343
TaiI	ACGT	2 cut(s)	637, 2824
TatI	WGTACW	3 cut(s)	1126, 1615, 2380
TauI	GCSGC	1 cut(s)	2275
TfiI	GAWTC	8 cut(s)	264, 517, 998, 1333, 1435, 1673, 1921, 2005
TscAI	CASTG	5 cut(s)	664, 1255, 1611, 2077, 2699
TseFI	GTSAC	2 cut(s)	16, 2896
TseI	GCWGC	6 cut(s)	802, 1166, 1442, 1538, 2571, 2626
Tsp45I	GTSAC	2 cut(s)	16, 2896
TspGWI	ACGGA	1 cut(s)	2158
TspRI	CASTG	5 cut(s)	664, 1255, 1611, 2077, 2699
Tth111I	GACNNNGTC	1 cut(s)	1935
Van91I	CCANNNNNTGG	2 cut(s)	566, 2681
VneI	GTGCAC	1 cut(s)	1749
VpaK11BI	GGWCC	3 cut(s)	97, 1876, 2590
VspI	ATTAAT	1 cut(s)	2657
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	7 cut(s)	227, 324, 796, 1051, 1062, 1531, 1833
XbaI	TCTAGA	2 cut(s)	1520, 2548
XceI	RCATGY	3 cut(s)	650, 967, 1895
XmiI	GTMKAC	2 cut(s)	609, 2757
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	7 cut(s)	543, 1130, 1521, 1865, 2250, 2378, 2549
Zsp2I	ATGCAT	1 cut(s)	1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.