Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Reverse (-)

14364634 .. 14367297

Gene Structure 2664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTCGTGGAAAGGTTCAGATGAAGAAGATCGAGAACCCGGTGCACCGACAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTGAAGAAGGCCAAGGAGCTTTCGGTGCTGTGTGATGCAGATATTGGAGTTCTTATTTACTCCTCCCACGGAAAGCTCTTTGAACTAGCCACCAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAAATGAAGCCAGCTCGAGTACCTCAGGCTGAAACAGCCATGGAAACCCAGACTCTGACTTATAAGATTAATGGGAACACATGTGGACGGCGTGTGGCGTCTGCTTCAGGTTCAATAATTTCAGGTTTAGGGATGCAAAAAAAGGAGATTAACTTGCTGAAACAAGAGATTGAAATACTACAAAAAGGTCTCAGGTATATGTTTGGAGGAGGTGCTGGGACAATGTCTTTGGATGAACTACAAGTGCTTGAAAAACATCTTGAACTTTGGATTTACCACGTGCGCTCGGCAAAGATTGAAGAGAACAGTGGAGTCACTAACCTTATACCAATGGCCTCTGATAGCCCATATCCACTAACCATACCAAATGATGACATAATTTCAATCCTAGGAAGCAACTTTGGCTTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

208

Amino Acids

23.0

Weight (kDa)

9.4

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	4.2e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	118 - 169	2.1e-11	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AcuI	CTGAAG	2 cut(s)	107, 303
AcvI	CACGTG	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	2 cut(s)	209, 234
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	8 cut(s)	167, 203, 327, 386, 464, 476, 512, 597
AluBI	AGCT	3 cut(s)	103, 160, 227
AluI	AGCT	3 cut(s)	103, 160, 227
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	93, 546
ApaLI	GTGCAC	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AseI	ATTAAT	1 cut(s)	282
AspA2I	CCTAGG	1 cut(s)	601
AspLEI	GCGC	2 cut(s)	72, 498
AsuC2I	CCSGG	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	228
AvrII	CCTAGG	1 cut(s)	601
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	6
BbrPI	CACGTG	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	170, 602
BfoI	RGCGCY	1 cut(s)	73
BlnI	CCTAGG	1 cut(s)	601
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	109, 336
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	4 cut(s)	96, 151, 252, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	4 cut(s)	96, 151, 252, 601
BseGI	GGATG	2 cut(s)	351, 451
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	251, 418
BseRI	GAGGAG	2 cut(s)	136, 435
BseSI	GKGCMC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	428
BshFI	GGCC	2 cut(s)	95, 548
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	95, 548
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	2 cut(s)	95, 548
BspCNI	CTCAG	2 cut(s)	250, 417
BspLI	GGNNCC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	96, 151, 252, 601
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	311
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	3 cut(s)	96, 252, 601
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	68, 225
BstDEI	CTNAG	2 cut(s)	237, 404
BstDSI	CCRYGG	2 cut(s)	151, 252
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	351, 451
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	72, 498
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 248, 615
BstNSI	RCATGY	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	95, 548
BtgI	CCRYGG	2 cut(s)	151, 252
BtsCI	GGATG	2 cut(s)	351, 451
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	68, 225
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	2 cut(s)	72, 498
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	208, 233
CviAII	CATG	4 cut(s)	187, 211, 253, 294
CviQI	GTAC	2 cut(s)	208, 233
DdeI	CTNAG	2 cut(s)	237, 404
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	3 cut(s)	96, 252, 601
Eco31I	GGTCTC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	107, 303
Eco72I	CACGTG	1 cut(s)	493
Eco81I	CCTNAGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	96, 252, 601
ErhI	CCWWGG	3 cut(s)	96, 252, 601
FaeI	CATG	4 cut(s)	190, 214, 256, 297
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	186, 210, 252, 293
FokI	GGATG	2 cut(s)	358, 458
FspBI	CTAG	2 cut(s)	170, 602
GlaI	GCGC	2 cut(s)	71, 497
GsaI	CCCAGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	95, 548
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	2 cut(s)	72, 498
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	4 cut(s)	190, 214, 256, 297
Hin6I	GCGC	2 cut(s)	70, 496
HinP1I	GCGC	2 cut(s)	70, 496
HinfI	GANTC	2 cut(s)	265, 525
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	46, 299
Hpy188I	TCNGA	4 cut(s)	21, 87, 270, 553
Hpy188III	TCNNGA	2 cut(s)	34, 473
Hpy8I	GTNNAC	2 cut(s)	46, 299
HpyAV	CCTTC	2 cut(s)	70, 85
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	5 cut(s)	46, 66, 122, 190, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 248, 615
HpyF3I	CTNAG	2 cut(s)	237, 404
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	190, 214, 256, 297
HspAI	GCGC	2 cut(s)	70, 496
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	100
LweI	GCATC	2 cut(s)	109, 336
MaeI	CTAG	2 cut(s)	170, 602
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	55, 526
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	37, 40, 100, 524
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	330, 591
MlyI	GAGTC	2 cut(s)	259, 534
MnlI	CCTC	5 cut(s)	157, 246, 413, 416, 559
MseI	TTAA	2 cut(s)	282, 363
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	109, 248, 615
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	4 cut(s)	190, 214, 256, 297
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	2 cut(s)	98, 479
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	228
PciI	ACATGT	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	436
PleI	GAGTC	2 cut(s)	259, 533
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
PpsI	GAGTC	2 cut(s)	259, 533
Ppu21I	YACGTR	1 cut(s)	493
PscI	ACATGT	1 cut(s)	293
PshBI	ATTAAT	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	276
PspCI	CACGTG	1 cut(s)	493
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	436
RsaI	GTAC	2 cut(s)	209, 234
RsaNI	GTAC	2 cut(s)	208, 233
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	282, 363
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	2 cut(s)	259, 534
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	2 cut(s)	109, 336
Sfr274I	CTCGAG	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	228, 619
SmoI	CTYRAG	2 cut(s)	228, 619
Sse9I	AATT	2 cut(s)	330, 591
SspMI	CTAG	2 cut(s)	170, 602
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	3 cut(s)	96, 252, 601
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	33, 229
TasI	AATT	2 cut(s)	330, 591
Tru1I	TTAA	2 cut(s)	282, 363
Tru9I	TTAA	2 cut(s)	282, 363
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	4 cut(s)	38, 227, 233, 462
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	282
XceI	RCATGY	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	228
XmaJI	CCTAGG	1 cut(s)	601
XspI	CTAG	2 cut(s)	170, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.