Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Reverse (-)

44800773 .. 44805151

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G548000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTCGTGGAAAGGTTCAGATGAAGAAGATCGAGAACCCGGTGCACAGGCAGGTTACCTTCTGCAAGCGCAGGGCGGGGCTGCTGAAGAAGGCTAAGGAGCTCTCTGTGCTGTGTGATGCTGATATTGGAATTCTCATTTTCTCCTCCCATGGAAAGCTCTTTGAACTTGCCACCAAAGGAAACATGCAAGGGCTTATTGAGAAGTACATGAAGATGAAGCCACCCCGAGTGTCTCAGGCTGATCAAGCCATAGAAACGCAAACTCTGGATGCAAAAAAAGAGATTAACCTGCTGAAACAGGAGATTGAAATACTGCAAAAAGGTCTCAGGTACATGTTTGGAGGGGGTGCTGGCACAATGACCTTGGATGAACTACAAGTGCTTGAAAAACATCTTGAAGTATGGATTTATCACGTACGCTCGGCAAAGATGGACGTTTTGTTCCAAGAGATCCAACTGTTAAGGAATTCGGAAGGAATACTGACAGCTGCAAATAAGTATCTACAAGACAAGATTGTTGAAGAGAACATCGGAGTTACTAACATTACACCAATGGCCTCTGACAATCCATATCCACTAACCATACCAGATGATGACATATTTCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

205

Amino Acids

23.13

Weight (kDa)

8.42

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	43, 300
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	3 cut(s)	132, 469, 609
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	209, 335, 420
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	6 cut(s)	167, 311, 389, 401, 524, 608
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	3 cut(s)	103, 160, 491
AluI	AGCT	3 cut(s)	103, 160, 491
Alw21I	GWGCWC	2 cut(s)	48, 105
Alw26I	GTCTC	2 cut(s)	240, 332
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	558
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	82, 491
ApoI	RAATTY	3 cut(s)	132, 469, 609
AspLEI	GCGC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	48, 105
BbvI	GCAGC	2 cut(s)	69, 478
BccI	CCATC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	240, 332
BfuAI	ACCTGC	2 cut(s)	43, 300
BisI	GCNGC	2 cut(s)	83, 492
BlsI	GCNGC	2 cut(s)	84, 493
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	109, 262
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	151, 366
BseDI	CCNNGG	2 cut(s)	151, 366
BseGI	GGATG	2 cut(s)	277, 376
BseMII	CTCAG	2 cut(s)	251, 343
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	69, 478
BshFI	GGCC	1 cut(s)	560
BsiHKAI	GWGCWC	2 cut(s)	48, 105
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	41
BsiWI	CGTACG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	240, 332
BsnI	GGCC	1 cut(s)	560
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	48, 105
Bsp143I	GATC	3 cut(s)	30, 244, 453
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	2 cut(s)	250, 342
BspMI	ACCTGC	2 cut(s)	43, 300
BspPI	GGATC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	151, 366
BssMI	GATC	3 cut(s)	30, 244, 453
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	151, 366
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	462
Bst6I	CTCTTC	1 cut(s)	519
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	68, 355
BstDEI	CTNAG	3 cut(s)	96, 237, 329
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	277, 376
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	33, 247, 456
BstMAI	GTCTC	2 cut(s)	240, 332
BstMBI	GATC	3 cut(s)	30, 244, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 248
BstNSI	RCATGY	2 cut(s)	190, 340
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	69, 478
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	560
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	277, 376
BveI	ACCTGC	2 cut(s)	43, 300
Cac8I	GCNNGC	2 cut(s)	68, 355
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	208, 334, 419
CviAII	CATG	4 cut(s)	152, 187, 211, 337
CviQI	GTAC	3 cut(s)	208, 334, 419
DdeI	CTNAG	3 cut(s)	96, 237, 329
DpnI	GATC	3 cut(s)	32, 246, 455
DpnII	GATC	3 cut(s)	30, 244, 453
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	151, 366
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	2 cut(s)	132, 469
EcoT14I	CCWWGG	2 cut(s)	151, 366
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	151, 366
FaeI	CATG	4 cut(s)	155, 190, 214, 340
FaiI	YATR	9 cut(s)	153, 188, 212, 254, 338, 406, 574, 587, 602
FatI	CATG	4 cut(s)	151, 186, 210, 336
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	83, 492
FokI	GGATG	2 cut(s)	284, 383
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	83, 492
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	83, 492
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	155, 190, 214, 340
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	21, 475, 536, 565
Hpy188III	TCNNGA	3 cut(s)	34, 269, 398
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	70, 85, 470
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	2 cut(s)	417, 438
HpyCH4V	TGCA	6 cut(s)	46, 66, 190, 275, 319, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 248
HpyF3I	CTNAG	3 cut(s)	96, 237, 329
HpySE526I	ACGT	2 cut(s)	417, 438
Hsp92II	CATG	4 cut(s)	155, 190, 214, 340
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	30, 244, 453
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	69, 478
LweI	GCATC	2 cut(s)	109, 262
MaeII	ACGT	2 cut(s)	417, 438
MaeIII	GTNAC	2 cut(s)	55, 538
MalI	GATC	3 cut(s)	32, 246, 455
MboI	GATC	3 cut(s)	30, 244, 453
MboII	GAAGA	5 cut(s)	37, 40, 100, 226, 536
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	48, 105
MluCI	AATT	3 cut(s)	132, 469, 609
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	157, 338, 571
MseI	TTAA	3 cut(s)	288, 464, 613
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	109, 248
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	30, 244, 453
NlaIII	CATG	4 cut(s)	155, 190, 214, 340
NmeAIII	GCCGAG	1 cut(s)	404
NspI	RCATGY	2 cut(s)	190, 340
PciI	ACATGT	1 cut(s)	336
Pfl23II	CGTACG	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	84, 493
Ppu21I	YACGTR	1 cut(s)	418
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspLI	CGTACG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	209, 335, 420
RsaNI	GTAC	3 cut(s)	208, 334, 419
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	288, 464, 613
SatI	GCNGC	2 cut(s)	83, 492
Sau3AI	GATC	3 cut(s)	30, 244, 453
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	48, 105
SfaNI	GCATC	2 cut(s)	109, 262
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	132, 469, 609
SsiI	CCGC	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	151, 366
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	2 cut(s)	420, 441
TaqI	TCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	132, 469, 609
TatI	WGTACW	1 cut(s)	207
Tru1I	TTAA	3 cut(s)	288, 464, 613
Tru9I	TTAA	3 cut(s)	288, 464, 613
TseI	GCWGC	2 cut(s)	82, 491
TspDTI	ATGAA	4 cut(s)	38, 227, 233, 387
VneI	GTGCAC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	132, 469, 609
XceI	RCATGY	2 cut(s)	190, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.