Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Forward (+)

23723845 .. 23726660

Gene Structure 2816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTCGTGGAAAGGTTCAGATGAAGAAGATCGAGAACCCGGTGCACCGACAAGTTACCTTCTGCAAGCGTCGAGCAGGGCTCTTGAAGAAGGCTAAGGAGCTTTCTGTGCTGTGTGATGCAGATATTGGAGTTCTGATTTACTCTTCCCATGGAAAGCTCTTTGAACTAGCCACCAAAGGATCCATGCAAGGGCTTATTGAAAGGTACATGAAAACGAAGCCTGCTCGAGTACCTCAGGCTGAACCTGTCATGGAAACCCAGACTCTGGATGCAAAAAAAGAGTGTAACTTGCTGAAACAGGAGATTGAAATACTACAGAAAGGTCTCAGGTATATGTTCGGAGGAGGTGCTGGGACAATGTCTTTGGATGAACTACAAGTGCTTGAAAAACATCTCGAACTTTGGATTTACCACGTCCGCTCTGCAAAGATGGACATTTTACTGCAAGAGATTCAACTGTTGAGGAATTCAGAAGGAATACTGACTGCTGCAAATAAGTATCTTCAAGACAAGATTGAAGAGAACAGTGGAGTCACTAACCTTATGCCAGTGGCGACTGATACCCCATATCCACTAACCATACCAAATGATGATATAATTTCACTGTTAGGAAGCAACTTTGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

211

Amino Acids

23.61

Weight (kDa)

8.66

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	4.2e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	90 - 174	1.2e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	423
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	177, 190
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	2 cut(s)	209, 234
AfiI	CCNNNNNNNGG	2 cut(s)	192, 268
AgsI	TTSAA	8 cut(s)	88, 167, 203, 311, 389, 458, 509, 521
AjiI	CACGTC	1 cut(s)	418
AluBI	AGCT	2 cut(s)	103, 160
AluI	AGCT	2 cut(s)	103, 160
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	177, 190
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AsuC2I	CCSGG	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	109, 262
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bpu10I	CCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 268
Bse1I	ACTGG	1 cut(s)	551
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	277, 376
BseLI	CCNNNNNNNGG	2 cut(s)	192, 268
BseMII	CTCAG	2 cut(s)	251, 343
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	192, 268
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	48, 84
Bsp143I	GATC	2 cut(s)	30, 182
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	421
BspCNI	CTCAG	2 cut(s)	250, 342
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	177, 190
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	30, 182
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	462, 530, 609
Bst6I	CTCTTC	2 cut(s)	151, 516
BstC8I	GCNNGC	2 cut(s)	68, 225
BstDEI	CTNAG	3 cut(s)	96, 237, 329
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	277, 376
BstKTI	GATC	2 cut(s)	33, 185
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	30, 182
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	277, 376
BtsIMutI	CAGTG	3 cut(s)	535, 558, 605
Cac8I	GCNNGC	2 cut(s)	68, 225
CaiI	CAGNNNCTG	1 cut(s)	268
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	208, 233
CviAII	CATG	4 cut(s)	152, 187, 211, 253
CviJI	RGCY	9 cut(s)	5, 82, 95, 103, 160, 173, 196, 223, 242
CviKI_1	RGCY	9 cut(s)	5, 82, 95, 103, 160, 173, 196, 223, 242
CviQI	GTAC	2 cut(s)	208, 233
DdeI	CTNAG	3 cut(s)	96, 237, 329
DpnI	GATC	2 cut(s)	32, 184
DpnII	GATC	2 cut(s)	30, 182
Eam1104I	CTCTTC	2 cut(s)	151, 516
EarI	CTCTTC	2 cut(s)	151, 516
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	4 cut(s)	155, 190, 214, 256
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	4 cut(s)	151, 186, 210, 252
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	2 cut(s)	284, 383
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	357
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	155, 190, 214, 256
HinfI	GANTC	3 cut(s)	265, 454, 534
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	21, 138, 344, 475
Hpy188III	TCNNGA	5 cut(s)	34, 85, 269, 398, 509
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	70, 85, 470
HpyCH4III	ACNGT	3 cut(s)	462, 530, 609
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	8 cut(s)	46, 66, 122, 190, 275, 428, 448, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	3 cut(s)	96, 237, 329
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	155, 190, 214, 256
Kzo9I	GATC	2 cut(s)	30, 182
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	109, 262
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	55, 287, 535
MalI	GATC	2 cut(s)	32, 184
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	2 cut(s)	30, 182
MboII	GAAGA	6 cut(s)	37, 40, 100, 138, 497, 533
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	48, 84
MluCI	AATT	2 cut(s)	469, 600
MlyI	GAGTC	2 cut(s)	259, 543
MnlI	CCTC	4 cut(s)	246, 338, 341, 459
MseI	TTAA	1 cut(s)	631
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	30, 182
NlaIII	CATG	4 cut(s)	155, 190, 214, 256
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	535
PaeR7I	CTCGAG	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	2 cut(s)	259, 542
PpsI	GAGTC	2 cut(s)	259, 542
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	361
RsaI	GTAC	2 cut(s)	209, 234
RsaNI	GTAC	2 cut(s)	208, 233
SaqAI	TTAA	1 cut(s)	631
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	30, 182
SchI	GAGTC	2 cut(s)	259, 543
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	48, 84
SfaNI	GCATC	2 cut(s)	109, 262
SfcI	CTRYAG	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	469, 600
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	462, 530, 609
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	4 cut(s)	33, 73, 229, 399
TasI	AATT	2 cut(s)	469, 600
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	631
Tru9I	TTAA	1 cut(s)	631
TscAI	CASTG	3 cut(s)	535, 558, 612
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	3 cut(s)	38, 227, 387
TspRI	CASTG	3 cut(s)	535, 558, 612
Tth111I	GACNNNGTC	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	228
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.