Rorug07G0262100
MADS Family

Agamous-like MADS-box protein AGL12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012166
Physical Location & Seq
Forward (+)
24670675 .. 24670974
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0262100.1

Sequence Viewer

Length: 300 bp
ATGGGAGCCTCCAGTGGGCCAAGGCTTTCTGGAATGCAGAGACAAGTACTTAGTCTATACAGAGGGTTCTTGCGGGCAGCTCGTTTAAAATCTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCCAACGAGTTCCGCCACAATGCCAAGAATGTAGACCGCAAGAATTTTCTTTACATTGAGTACTTGGTTCGCCGCGGAAGGAAACAGCTTGATCAGCTCAAGAGCCCTGATACTGTTGGATTATCAGCTCTGAATGTGAGTCGTTTCCCACAAACAAAACATCCTACTTATTGA

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

10.75

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 74 2.6e-12 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71692
fragaria_vesca FvH4_5g32850 FvH4_5g32850
malus_domestica MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis pycom15g35900
rosa_chinensis RchiOBHm_Chr7g0230721
rosa_laevigata RLG00000001480
rosa_multiflora Rmu_sc0007883.1_g000004
rosa_roxburghii Rroxscaffold_3G00229810
rosa_rugosa Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana Rw7G034370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 73, 139, 163, 199, 201
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 48, 188
AfiI CCNNNNNNNGG 1 cut(s) 15
AluBI AGCT 4 cut(s) 80, 214, 223, 254
AluI AGCT 4 cut(s) 80, 214, 223, 254
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 89
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 2 cut(s) 78, 199
BlsI GCNGC 2 cut(s) 79, 200
BmcAI AGTACT 2 cut(s) 48, 188
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 20, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 20, 199
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 34
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 100, 217
BspACI CCGC 5 cut(s) 73, 139, 163, 199, 201
BspANI GGCC 1 cut(s) 19
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 20, 199
BssMI GATC 2 cut(s) 100, 217
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 2 cut(s) 103, 220
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 100, 217
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 17
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 2 cut(s) 47, 187
CviJI RGCY 8 cut(s) 8, 19, 25, 80, 214, 223, 231, 254
CviKI_1 RGCY 8 cut(s) 8, 19, 25, 80, 214, 223, 231, 254
CviQI GTAC 2 cut(s) 47, 187
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 102, 219
DpnII GATC 2 cut(s) 100, 217
DraI TTTAAA 1 cut(s) 87
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 20
FaiI YATR 1 cut(s) 58
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 78, 199
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 78, 199
GluI GCNGC 2 cut(s) 78, 199
HaeIII GGCC 1 cut(s) 19
HinfI GANTC 2 cut(s) 116, 265
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 30, 226
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 217
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 100, 217
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 15, 25, 246
Lsp1109I GCAGC 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 102, 219
MboI GATC 2 cut(s) 100, 217
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 169
MlyI GAGTC 2 cut(s) 125, 274
MmeI TCCRAC 2 cut(s) 153, 223
MnlI CCTC 2 cut(s) 19, 56
MseI TTAA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 39
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 100, 217
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 117
PctI GAATGC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 79, 200
PleI GAGTC 2 cut(s) 124, 273
PpsI GAGTC 2 cut(s) 124, 273
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 2 cut(s) 48, 188
RsaNI GTAC 2 cut(s) 47, 187
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 2 cut(s) 78, 199
Sau3AI GATC 2 cut(s) 100, 217
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 2 cut(s) 48, 188
SchI GAGTC 2 cut(s) 125, 274
SduI GDGCHC 1 cut(s) 233
SetI ASST 4 cut(s) 82, 216, 225, 256
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 169
SsiI CCGC 5 cut(s) 73, 139, 163, 199, 201
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 169
TatI WGTACW 2 cut(s) 46, 186
TauI GCSGC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 117
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 2 cut(s) 48, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.