Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Forward (+)

55581411 .. 55584328

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG414000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTCGTGGAAAGGTTCAGATGAAGAAGATCGAGAACCCGGTGCACCGACAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTGAAGAAGGCCAAGGAGCTTTCTGTGCTGTGTGATGCAGATATTGGAGTTCTTATTTACTCCTCCCATGGAAAGCTCTTTGAGCTAGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAAATGAAGCCTGCTCGAGTACCTCAGGCTGAAACAGCCATGGAAACCCAGACTCTGGGTGCAAAAAAGGAGATTAACTTGCTGAAACAAGAGATTGAAATACTACAAAAAGGTCTCAGGTATATGTTTGGAGGAGGTGCTGGGACAATGTCTTTGGATGAACTGCAAGTGCTTGAAAAACATCTTGAACTTTGGATTTACCACGTGCGCTCGGCAAAGGTATTTGAATTATATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

150

Amino Acids

17.07

Weight (kDa)

9.61

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	2.3e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 144	6e-12	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	107
AcvI	CACGTG	1 cut(s)	418
AfaI	GTAC	2 cut(s)	209, 234
AfiI	CCNNNNNNNGG	2 cut(s)	192, 268
AgsI	TTSAA	5 cut(s)	203, 311, 389, 401, 440
AluBI	AGCT	3 cut(s)	103, 160, 169
AluI	AGCT	3 cut(s)	103, 160, 169
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	44
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspLEI	GCGC	2 cut(s)	72, 423
AsuC2I	CCSGG	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	6
BbrPI	CACGTG	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	109
BmtI	GCTAGC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	96, 151, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 268
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	96, 151, 252
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	192, 268
BseMII	CTCAG	2 cut(s)	251, 343
BseRI	GAGGAG	2 cut(s)	136, 360
BseSI	GKGCMC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	192, 268
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	30
Bsp19I	CCATGG	2 cut(s)	151, 252
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	250, 342
BspLI	GGNNCC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	96, 151, 252
BssMI	GATC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	3 cut(s)	96, 151, 252
Bst2BI	CACGAG	1 cut(s)	6
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	3 cut(s)	68, 171, 225
BstDEI	CTNAG	2 cut(s)	237, 329
BstDSI	CCRYGG	2 cut(s)	151, 252
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	2 cut(s)	72, 423
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 166, 248
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	2 cut(s)	151, 252
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	68, 171, 225
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	2 cut(s)	72, 423
Csp6I	GTAC	2 cut(s)	208, 233
CviAII	CATG	5 cut(s)	152, 187, 211, 253, 450
CviQI	GTAC	2 cut(s)	208, 233
DdeI	CTNAG	2 cut(s)	237, 329
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	96, 151, 252
Eco31I	GGTCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	107
Eco72I	CACGTG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	96, 151, 252
ErhI	CCWWGG	3 cut(s)	96, 151, 252
FaeI	CATG	5 cut(s)	155, 190, 214, 256, 453
FaiI	YATR	9 cut(s)	153, 188, 212, 254, 336, 338, 445, 447, 451
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	5 cut(s)	151, 186, 210, 252, 449
FokI	GGATG	1 cut(s)	383
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	71, 422
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	2 cut(s)	72, 423
Hin1II	CATG	5 cut(s)	155, 190, 214, 256, 453
Hin6I	GCGC	2 cut(s)	70, 421
HinP1I	GCGC	2 cut(s)	70, 421
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	21, 87
Hpy188III	TCNNGA	2 cut(s)	34, 398
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	70, 85
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	6 cut(s)	46, 66, 122, 190, 275, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 166, 248
HpyF3I	CTNAG	2 cut(s)	237, 329
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	5 cut(s)	155, 190, 214, 256, 453
HspAI	GCGC	2 cut(s)	70, 421
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	9 cut(s)	38, 54, 63, 224, 237, 254, 275, 316, 339
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	37, 40, 100
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	4 cut(s)	157, 246, 338, 341
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	109, 166, 248
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	2 cut(s)	151, 252
NdeII	GATC	1 cut(s)	30
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	155, 190, 214, 256, 453
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	2 cut(s)	98, 404
PaeR7I	CTCGAG	1 cut(s)	228
PflFI	GACNNNGTC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	268
PleI	GAGTC	1 cut(s)	259
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	418
PspCI	CACGTG	1 cut(s)	418
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	361
RsaI	GTAC	2 cut(s)	209, 234
RsaNI	GTAC	2 cut(s)	208, 233
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	3 cut(s)	96, 151, 252
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	33, 229
TasI	AATT	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TspDTI	ATGAA	4 cut(s)	38, 227, 233, 387
Tth111I	GACNNNGTC	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	228
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.