Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012166

Physical Location & Seq

Genomic Coordinates Reverse (-)

50120343 .. 50125258

Gene Structure 4916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1400400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTCGTGGAAAGGTTCAGATGAAGAGGATCGAGAACCCGGTGCACAGGCAGGTTACTTTCTGCAAGCGCCGGGTGGGACTCCTAAAGAAGGCTAAAGAGCTGTCTGTGCTGTGTGATGCTGAGATTGGAGTTTTCATTTTCTCCTCCCATGGAAAGCTCTTTGAACTAGCCACCAAAGGAAGCATGCAAGGGCTTATTGAGAGGTACATGAAGATGAAGCCCACCCGAGTGTCTCAGGTTGAACAAACCGTAGAAACACAGACTTTGGATGCGAAAAAGGAGATTAACTTGCTGAAACAGGAGATTGAAATACTGCAGAAAGGCCTCAGGTATATGTTTGATGGAGGTGCTGGGACAATGACTTTGGATGAACTACAAGTGCTTGAAAAAAATCTTGAAATATGGATTTATCACGTCCGCTCGGCAAAGATGGACATTTTGTTCCAAGAGATCCAGCTGTTGAGGAACTCGGAAGGAGTTCTGACAGCTGCAAATAAGTATCTTCAAGATAAGATTGAAGAGAACACTGGAGTTACTAACTTTATACCAATGGCGACTGACAACACATATCCGTTTACCATACCAGATGACATATTTGAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

203

Amino Acids

23.19

Weight (kDa)

7.68

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	3.3e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 174	4.7e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71692
fragaria_vesca	FvH4_5g32850 FvH4_5g32850
malus_domestica	MD08G1216000.v1.1 MD15G1400400.v1.1
prunus_persica	Prupe.1G548000_v2.0.a1 Prupe.1G548000_v2.0.a1
pyrus_communis	pycom15g35900
rosa_chinensis	RchiOBHm_Chr7g0230721
rosa_laevigata	RLG00000001480
rosa_multiflora	Rmu_sc0007883.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229810
rosa_rugosa	Rorug07G0262100 Rorug07G0262200 Rorug07G0262300
rosa_samantha	Rh7AG414000 Rh7BG391000 Rh7CG432900
rosa_wichuraiana	Rw7G034370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	423
AciI	CCGC	1 cut(s)	421
AclWI	GGATC	2 cut(s)	38, 448
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	7 cut(s)	167, 245, 311, 389, 401, 509, 521
AjiI	CACGTC	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	230
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	103, 160, 460, 491
AluI	AGCT	4 cut(s)	103, 160, 460, 491
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	38, 448
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	325
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	72
AsuC2I	CCSGG	2 cut(s)	41, 74
AvaI	CYCGRG	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	338, 427
BcnI	CCSGG	2 cut(s)	41, 74
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	41, 74
BmeT110I	CYCGRG	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	418
BmrFI	CCNGG	2 cut(s)	41, 74
BmsI	GCATC	2 cut(s)	109, 262
BpmI	CTGGAG	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	41, 74
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	535
Bse21I	CCTNAGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	277, 376
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	3 cut(s)	114, 251, 343
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	41, 73
BslFI	GGGAC	2 cut(s)	93, 370
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	93, 370
BsnI	GGCC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	30, 453
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	3 cut(s)	115, 250, 342
BspMAI	CTGCAG	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	38, 448
BsrBI	CCGCTC	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	30, 453
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	151
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	2 cut(s)	20, 516
BstC8I	GCNNGC	2 cut(s)	68, 188
BstDEI	CTNAG	3 cut(s)	123, 237, 329
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	277, 376
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	33, 456
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	30, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	39, 72
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	277, 376
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	68, 188
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	3 cut(s)	152, 187, 211
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	123, 237, 329
DpnI	GATC	2 cut(s)	32, 455
DpnII	GATC	2 cut(s)	30, 453
Eam1104I	CTCTTC	2 cut(s)	20, 516
EarI	CTCTTC	2 cut(s)	20, 516
Eco130I	CCWWGG	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	155, 190, 214
FaqI	GGGAC	2 cut(s)	93, 370
FatI	CATG	3 cut(s)	151, 186, 210
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	2 cut(s)	284, 383
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	2 cut(s)	41, 73
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	155, 190, 214
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	41, 73
Hpy166II	GTNNAC	2 cut(s)	46, 579
Hpy188I	TCNGA	3 cut(s)	21, 475, 486
Hpy188III	TCNNGA	3 cut(s)	34, 398, 509
Hpy8I	GTNNAC	2 cut(s)	46, 579
HpyAV	CCTTC	2 cut(s)	85, 470
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	5 cut(s)	46, 66, 190, 319, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	3 cut(s)	123, 237, 329
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	155, 190, 214
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	30, 453
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	109, 262
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	55, 535
MalI	GATC	2 cut(s)	32, 455
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	2 cut(s)	30, 453
MboII	GAAGA	4 cut(s)	37, 226, 497, 533
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	21, 157, 198, 338, 341, 459
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	2 cut(s)	215, 230
MspA1I	CMGCKG	2 cut(s)	460, 491
MspI	CCGG	2 cut(s)	41, 73
MspR9I	CCNGG	2 cut(s)	41, 74
MwoI	GCNNNNNNNGC	1 cut(s)	109
NciI	CCSGG	2 cut(s)	41, 74
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	30, 453
NlaIII	CATG	3 cut(s)	155, 190, 214
NmeAIII	GCCGAG	1 cut(s)	404
NspI	RCATGY	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	453
PvuII	CAGCTG	2 cut(s)	460, 491
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	215, 230
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	30, 453
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	41, 74
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	2 cut(s)	109, 262
SfcI	CTRYAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	2 cut(s)	215, 230
SphI	GCATGC	1 cut(s)	190
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	39, 72
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	5 cut(s)	38, 127, 227, 233, 387
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	535
VneI	GTGCAC	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.