Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Forward (+)

26996805 .. 26999067

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGGCAGCTTTGGGACTTCTCCGGAGAATGCCGCCGAAGCAGTCGGAGACGGCTCTATCTGCTCTTCTAAGCCTCATTCCTCAACATTCTTCCGATCTTCTCTCTCAAGTCGATCTCCCTCTTCAGGTGTTACGTGATATTGAAAGTGGGAAAGATTTCATCTTGTGTGAGTATAATAGAGATGCAGATTCCTACAGGTCACCTTGGTCAAATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTACCCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAGTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGAAGGCTTTGTGGCATGTTTCCTTATCAAGAAAGATGGGTCAAAGTCAGGTCATGGTCGGAGGGGATGCCTGGAGGAAGGAGCGTGGGATGCCATACATGTTATACAGGTTGGTTCAGAGGAGGAGGAAATGGCACAATATTGCTTAACAAGTACCATCATGCTTTCTCTGACAACTGATGATGAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAAATGAAAATGGAGCTAGCAGTAGCTGACGGACACCTGTGCAATATGGGGAGAATGATTGAAGAATTGGAAGGCAAACTGAGGAACTCACTTGATCAGGTTTACTTTGGGAAGACAAGAGAAATGGTTTGCACATTGCGTCCACCAGCTGAGATTGTACAAATGAGATTGCCTGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008290 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

256

Amino Acids

28.88

Weight (kDa)

4.74

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F_actin_cap_B	PF01115	1 - 239	8.1e-95	F-actin capping protein, beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	24
AciI	CCGC	2 cut(s)	35, 230
AclWI	GGATC	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	2 cut(s)	110, 321
AfaI	GTAC	2 cut(s)	517, 747
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	2 cut(s)	345, 460
AgsI	TTSAA	4 cut(s)	146, 275, 281, 650
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	5 cut(s)	11, 271, 604, 614, 737
AluI	AGCT	5 cut(s)	11, 271, 604, 614, 737
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	583
AlwNI	CAGNNNCTG	1 cut(s)	614
Aor13HI	TCCGGA	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	195
AsuNHI	GCTAGC	1 cut(s)	604
BbsI	GAAGAC	3 cut(s)	543, 592, 707
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	3 cut(s)	259, 392, 527
BceAI	ACGGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	434
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	233, 605
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	2 cut(s)	9, 35
BlsI	GCNGC	2 cut(s)	10, 36
Bme1390I	CCNGG	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	4 cut(s)	175, 229, 419, 442
BmtI	GCTAGC	1 cut(s)	608
BpiI	GAAGAC	3 cut(s)	543, 592, 707
BpmI	CTGGAG	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	722
BseAI	TCCGGA	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	244, 361, 434, 457
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	2 cut(s)	659, 729
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	497, 500
BseXI	GCAGC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	745
Bsp143I	GATC	5 cut(s)	97, 115, 300, 575, 682
BspACI	CCGC	2 cut(s)	35, 230
BspCNI	CTCAG	2 cut(s)	660, 730
BspEI	TCCGGA	1 cut(s)	24
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	1 cut(s)	583
BspQI	GCTCTTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	722
BsrGI	TGTACA	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	5 cut(s)	97, 115, 300, 575, 682
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	72, 129
BstAUI	TGTACA	1 cut(s)	745
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	606
BstDEI	CTNAG	3 cut(s)	71, 668, 738
BstEII	GGTNACC	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	244, 361, 434, 457
BstKTI	GATC	5 cut(s)	100, 118, 303, 578, 685
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	5 cut(s)	97, 115, 300, 575, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 62, 452, 564
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	3 cut(s)	349, 381, 464
BstPI	GGTNACC	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	3 cut(s)	543, 592, 707
BtsCI	GGATG	4 cut(s)	244, 361, 434, 457
Cac8I	GCNNGC	1 cut(s)	606
CaiI	CAGNNNCTG	1 cut(s)	614
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	516, 746
CviAII	CATG	5 cut(s)	346, 378, 416, 461, 523
CviQI	GTAC	2 cut(s)	516, 746
DdeI	CTNAG	3 cut(s)	71, 668, 738
DpnI	GATC	5 cut(s)	99, 117, 302, 577, 684
DpnII	GATC	5 cut(s)	97, 115, 300, 575, 682
Eam1104I	CTCTTC	2 cut(s)	72, 129
EarI	CTCTTC	2 cut(s)	72, 129
Eco130I	CCWWGG	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	110, 321
Eco91I	GGTNACC	1 cut(s)	201
EcoO65I	GGTNACC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	5 cut(s)	349, 381, 419, 464, 526
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	5 cut(s)	345, 377, 415, 460, 522
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	9, 35
FokI	GGATG	4 cut(s)	251, 368, 441, 464
Fsp4HI	GCNGC	2 cut(s)	9, 35
FspBI	CTAG	2 cut(s)	233, 605
GluI	GCNGC	2 cut(s)	9, 35
GsuI	CTGGAG	1 cut(s)	455
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	716
Hin1II	CATG	5 cut(s)	349, 381, 419, 464, 526
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	191, 548
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	343, 691, 731
Hpy188I	TCNGA	6 cut(s)	49, 97, 259, 423, 481, 534
Hpy188III	TCNNGA	4 cut(s)	25, 308, 391, 573
Hpy8I	GTNNAC	3 cut(s)	343, 691, 731
HpyAV	CCTTC	4 cut(s)	317, 359, 434, 653
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	188, 630, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 62, 452, 564
HpyF3I	CTNAG	3 cut(s)	71, 668, 738
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	5 cut(s)	349, 381, 419, 464, 526
Kpn2I	TCCGGA	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	97, 115, 300, 575, 682
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	443, 601
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	4 cut(s)	175, 229, 419, 442
MaeI	CTAG	2 cut(s)	233, 605
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	3 cut(s)	132, 201, 308
MalI	GATC	5 cut(s)	99, 117, 302, 577, 684
MboI	GATC	5 cut(s)	97, 115, 300, 575, 682
MluCI	AATT	4 cut(s)	260, 560, 579, 653
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	27, 401
MroI	TCCGGA	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	263, 509
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	40, 62, 452, 564
NdeII	GATC	5 cut(s)	97, 115, 300, 575, 682
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	5 cut(s)	349, 381, 419, 464, 526
NmuCI	GTSAC	2 cut(s)	201, 308
NspI	RCATGY	3 cut(s)	349, 381, 464
PciI	ACATGT	2 cut(s)	345, 460
PciSI	GCTCTTC	1 cut(s)	72
PctI	GAATGC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	10, 36
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
Ppu21I	YACGTR	1 cut(s)	137
PscI	ACATGT	2 cut(s)	345, 460
Psp6I	CCWGG	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	517, 747
RsaNI	GTAC	2 cut(s)	516, 746
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	263, 509
SatI	GCNGC	2 cut(s)	9, 35
Sau3AI	GATC	5 cut(s)	97, 115, 300, 575, 682
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	434
SfaNI	GCATC	4 cut(s)	175, 229, 419, 442
SfcI	CTRYAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	260, 560, 579, 653
SsiI	CCGC	2 cut(s)	35, 230
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	2 cut(s)	233, 605
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	260, 560, 579, 653
TatI	WGTACW	1 cut(s)	745
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	263, 509
Tru9I	TTAA	2 cut(s)	263, 509
TseFI	GTSAC	2 cut(s)	201, 308
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	201, 308
TspDTI	ATGAA	4 cut(s)	151, 336, 378, 608
TspGWI	ACGGA	1 cut(s)	633
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	3 cut(s)	349, 381, 464
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	233, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.