Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Forward (+)

5958923 .. 5961789

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1037000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGCGGCGATGGGACTGATGCGGCGGATGCCTCCCAAGCACACCGAGACGTCTCTCTCCGCCCTTCTCTCCCTTCTCCCCCAGCACTCATCCGATCTCCTCTCTCAAGTCGATCAGCCTCTCCAGGTTTTGTGCGATATGGAATACGGGAAGGAGTTCATTCTGTGTGAATATAACAGAGATGCAGACTCTTACAGATCACCTTGGTCAAACAAATATCATCCGCCGCTAGAAGACGGCAGCCTCCCATCTTTAGAGCTGAGGAAACTTGAAGTTGAAGCCAACGACATCTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGCATTTCATCAGTTTATATGTGGGAGGATGATAACGAAGGTTTTGTAGGCTGCTTTTTAATAAAAAAAGATGGCTCCAAGACAGGGCAAGGTCGGCGAGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTGATTGAGGTGGGTCCGGAGGAGGAAGGAACAGCCCATTACCGTTTAACAAGTACTGTAATGCTGTCTTTGACTACAGATAATGAGTCGTCAGGCACATTCAGTTTGTCTGGATCAATTAGACGACAGATGAATATGCACCTGTCAACTGAAGAAGGCCATCTTTGTAACATGGGAAGAATGATCGAAGAAATGGAGAGCAAGCTGAGAAATTCACTGGATCAGGTTTATTTTGGGAAGACGAAAGAGATGGTTTGCACATTACGACCGCCATCTGAAGTAGTGATGAGACTGCCCGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

256

Amino Acids

28.95

Weight (kDa)

4.89

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F_actin_cap_B	PF01115	1 - 239	3.7e-98	F-actin capping protein, beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	7 cut(s)	8, 25, 28, 63, 227, 230, 731
AclWI	GGATC	2 cut(s)	583, 690
AcsI	RAATTY	1 cut(s)	673
AcuI	CTGAAG	2 cut(s)	633, 759
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	275, 281
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	262, 667, 765
AluI	AGCT	3 cut(s)	262, 667, 765
Alw26I	GTCTC	3 cut(s)	44, 60, 745
AlwI	GGATC	2 cut(s)	583, 690
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	2 cut(s)	243, 378
ApoI	RAATTY	1 cut(s)	673
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	243, 707
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	255, 365
BccI	CCATC	6 cut(s)	7, 259, 392, 630, 706, 742
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	44, 60, 745
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	434, 537
BisI	GCNGC	5 cut(s)	9, 26, 230, 244, 379
BlsI	GCNGC	5 cut(s)	10, 27, 231, 245, 380
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	403, 477
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	4 cut(s)	12, 21, 175, 442
BpiI	GAAGAC	2 cut(s)	243, 707
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	2 cut(s)	313, 684
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	5 cut(s)	36, 92, 223, 361, 457
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	254, 659
BseNI	ACTGG	2 cut(s)	313, 684
BseRI	GAGGAG	2 cut(s)	92, 497
BseXI	GCAGC	2 cut(s)	255, 365
BseYI	CCCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	731
BshFI	GGCC	1 cut(s)	621
BsiEI	CGRYCG	1 cut(s)	731
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	3 cut(s)	44, 60, 745
BsmBI	CGTCTC	2 cut(s)	44, 60
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
BspACI	CCGC	7 cut(s)	8, 25, 28, 63, 227, 230, 731
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	2 cut(s)	255, 660
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	403, 477
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	2 cut(s)	583, 690
BsrI	ACTGG	2 cut(s)	313, 684
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	506, 520
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	263, 668
BstF5I	GGATG	5 cut(s)	36, 92, 223, 361, 457
BstKTI	GATC	6 cut(s)	100, 118, 203, 578, 648, 685
BstMAI	GTCTC	3 cut(s)	44, 60, 745
BstMBI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
BstMCI	CGRYCG	1 cut(s)	731
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 40, 421, 452
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	434, 537
BstV1I	GCAGC	2 cut(s)	255, 365
BstV2I	GAAGAC	2 cut(s)	243, 707
BsuRI	GGCC	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	5 cut(s)	36, 92, 223, 361, 457
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	3 cut(s)	447, 461, 634
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	2 cut(s)	263, 668
DpnI	GATC	6 cut(s)	99, 117, 202, 577, 647, 684
DpnII	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
EciI	GGCGGA	3 cut(s)	43, 52, 216
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	633, 759
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	2 cut(s)	44, 60
FaeI	CATG	3 cut(s)	450, 464, 637
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	446, 460, 633
Fnu4HI	GCNGC	5 cut(s)	9, 26, 230, 244, 379
FokI	GGATG	5 cut(s)	43, 79, 210, 368, 464
Fsp4HI	GCNGC	5 cut(s)	9, 26, 230, 244, 379
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	5 cut(s)	9, 26, 230, 244, 379
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	450, 464, 637
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	2 cut(s)	191, 548
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	2 cut(s)	97, 739
Hpy188III	TCNNGA	3 cut(s)	308, 479, 573
Hpy8I	GTNNAC	1 cut(s)	609
HpyAV	CCTTC	7 cut(s)	77, 86, 148, 317, 359, 482, 611
HpyCH4III	ACNGT	2 cut(s)	506, 520
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	188, 436, 601, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 40, 421, 452
HpyF3I	CTNAG	2 cut(s)	263, 668
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	450, 464, 637
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	2 cut(s)	255, 365
LweI	GCATC	4 cut(s)	12, 21, 175, 442
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	308, 629
MalI	GATC	6 cut(s)	99, 117, 202, 577, 647, 684
MboI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
MboII	GAAGA	5 cut(s)	248, 626, 651, 662, 712
MluCI	AATT	2 cut(s)	579, 673
MlyI	GAGTC	2 cut(s)	185, 557
MroI	TCCGGA	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	386, 509
MspA1I	CMGCKG	1 cut(s)	765
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	31, 40, 421, 452
NdeII	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
NlaIII	CATG	3 cut(s)	450, 464, 637
NlaIV	GGNNCC	2 cut(s)	403, 477
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	10, 27, 231, 245, 380
PleI	GAGTC	2 cut(s)	185, 556
PpsI	GAGTC	2 cut(s)	185, 556
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	403, 477
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	765
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	386, 509
SatI	GCNGC	5 cut(s)	9, 26, 230, 244, 379
Sau3AI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	517
SchI	GAGTC	2 cut(s)	185, 557
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	4 cut(s)	12, 21, 175, 442
SfcI	CTRYAG	2 cut(s)	434, 537
SinI	GGWCC	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	579, 673
SsiI	CCGC	7 cut(s)	8, 25, 28, 63, 227, 230, 731
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	506, 520
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	114, 648
TasI	AATT	2 cut(s)	579, 673
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	3 cut(s)	11, 28, 232
Tru1I	TTAA	2 cut(s)	386, 509
Tru9I	TTAA	2 cut(s)	386, 509
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	2 cut(s)	243, 378
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	151, 324, 336, 608
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	1 cut(s)	673
XceI	RCATGY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.