Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Forward (+)

3234002 .. 3236756

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02730.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTAAGATGTATTAAGTATTTGAGATGTATTCAACAATATAAAAAGCCTAAAAAAATTCAGTGTGTGAGAGAGAGATTTGGAGAGGGAAACTCGGGTCAAACGAAGCAAGGCGCCTCTTTTCTTTTTGCCTCGCTTCTCTGGAGTTTTATCAACCCGAACAAAAAACCAAACAAAAGGAAAAGAAAAGGAAAGAGGAAAAATGGAAGCGGCGATGGGACTGATGCGGCGGATGCCTCCCAAGCACACCGAGACGTCTCTCTCCGCCCTTCTCTCCCTTCTCCCCCAGCACTCCTCCGATCGATCCTCTCTCAAATCGATCAGCCTCTCCAGGTTTTGTGCGACATGGAATACGGGAAGGAGTTCATTCTGTGTGAATATAACAGAGATGCAGACTCTTACAGATCACCTTGGTCAAACAAATATCATCCGCCACTAGAAGACGGCAGCCTCCCATCTTTAGAGCTGAGGAAACTTGAAGTTGAAGCCAACGACATCTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGCATTTCATCAGTTTATATGTGGGAGGATGATAACGAAGGTTTTGTAGGCTGCTTTTTAATAAAGAAAGATGGCTCCAAGACAGGGCAAGGTCGGCGAGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTGATTGAGGTGGGTCCGGAGGAGGAAGGAACAGCTCATTACCGTTTAACAAGTACTGTAATGCTGTCTTTGACTACAGATAATGAATCGTCAGGCACATTCAGTTTGTCTGGATCAATTAGACGACAGATGAATATGCATCTGTCAACTGAAGAAGGCCATCTTTGTAACATGGGAAGAATGATTGAAGAAATGGAGAGCAAGCTGAGAAATTCACTGGATCAGGTTTATTTTGGGAAGACGAAAGAGATGGTTTGCACATTACGACCACCATCTGAAGTAGTGATGAGACTGCCTGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

324

Amino Acids

36.69

Weight (kDa)

8.03

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	5 cut(s)	210, 227, 230, 265, 431
AclWI	GGATC	3 cut(s)	298, 787, 894
AcsI	RAATTY	2 cut(s)	57, 877
AcuI	CTGAAG	2 cut(s)	837, 963
AcyI	GRCGYC	2 cut(s)	114, 255
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	1 cut(s)	615
AflIII	ACRYGT	1 cut(s)	664
AgsI	TTSAA	4 cut(s)	35, 479, 485, 854
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	4 cut(s)	466, 701, 871, 969
AluI	AGCT	4 cut(s)	466, 701, 871, 969
Alw26I	GTCTC	3 cut(s)	246, 262, 949
AlwI	GGATC	3 cut(s)	298, 787, 894
Ama87I	CYCGRG	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	1 cut(s)	823
ApeKI	GCWGC	2 cut(s)	447, 582
ApoI	RAATTY	2 cut(s)	57, 877
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	2 cut(s)	447, 911
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	459, 569
BccI	CCATC	6 cut(s)	209, 463, 596, 834, 910, 946
BceAI	ACGGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	3 cut(s)	246, 262, 949
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	638, 741
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	4 cut(s)	211, 228, 448, 583
BlsI	GCNGC	4 cut(s)	212, 229, 449, 584
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	3 cut(s)	115, 607, 681
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	5 cut(s)	214, 223, 379, 646, 814
BpiI	GAAGAC	2 cut(s)	447, 911
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	2 cut(s)	163, 314
Bpu10I	CCTNAGC	1 cut(s)	467
Bsa29I	ATCGAT	2 cut(s)	302, 318
BsaHI	GRCGYC	2 cut(s)	114, 255
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse1I	ACTGG	2 cut(s)	517, 888
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	332
BseCI	ATCGAT	2 cut(s)	302, 318
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	4 cut(s)	238, 427, 565, 661
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	458, 863
BseNI	ACTGG	2 cut(s)	517, 888
BseRI	GAGGAG	2 cut(s)	284, 701
BseXI	GCAGC	2 cut(s)	459, 569
BseYI	CCCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	825
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	2 cut(s)	302, 318
BsiEI	CGRYCG	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	3 cut(s)	246, 262, 949
BsmBI	CGTCTC	2 cut(s)	246, 262
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	825
BsoBI	CYCGRG	1 cut(s)	94
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
BspACI	CCGC	5 cut(s)	210, 227, 230, 265, 431
BspANI	GGCC	1 cut(s)	825
BspCNI	CTCAG	2 cut(s)	459, 864
BspDI	ATCGAT	2 cut(s)	302, 318
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	115, 607, 681
BspMAI	CTGCAG	1 cut(s)	642
BspPI	GGATC	3 cut(s)	298, 787, 894
BspT107I	GGYRCC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	517, 888
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
BssNI	GRCGYC	2 cut(s)	114, 255
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	710, 724
BstACI	GRCGYC	2 cut(s)	114, 255
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	869
BstDEI	CTNAG	2 cut(s)	467, 872
BstF5I	GGATG	4 cut(s)	238, 427, 565, 661
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	6 cut(s)	302, 306, 322, 407, 782, 889
BstMAI	GTCTC	3 cut(s)	246, 262, 949
BstMBI	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 242, 625, 656
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	638, 741
BstV1I	GCAGC	2 cut(s)	459, 569
BstV2I	GAAGAC	2 cut(s)	447, 911
Bsu15I	ATCGAT	2 cut(s)	302, 318
BsuRI	GGCC	1 cut(s)	825
BsuTUI	ATCGAT	2 cut(s)	302, 318
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	4 cut(s)	238, 427, 565, 661
BtsIMutI	CAGTG	2 cut(s)	68, 881
Cac8I	GCNNGC	1 cut(s)	869
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	680
ClaI	ATCGAT	2 cut(s)	302, 318
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	4 cut(s)	346, 651, 665, 838
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	2 cut(s)	467, 872
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	6 cut(s)	301, 305, 321, 406, 781, 888
DpnII	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
EciI	GGCGGA	3 cut(s)	245, 254, 420
Eco130I	CCWWGG	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	2 cut(s)	837, 963
Eco88I	CYCGRG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	807
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	410
Esp3I	CGTCTC	2 cut(s)	246, 262
FaeI	CATG	4 cut(s)	349, 654, 668, 841
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	4 cut(s)	345, 650, 664, 837
Fnu4HI	GCNGC	4 cut(s)	211, 228, 448, 583
FokI	GGATG	4 cut(s)	245, 414, 572, 668
Fsp4HI	GCNGC	4 cut(s)	211, 228, 448, 583
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	211, 228, 448, 583
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	2 cut(s)	163, 314
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	825
HapII	CCGG	1 cut(s)	683
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	2 cut(s)	114, 255
Hin1II	CATG	4 cut(s)	349, 654, 668, 841
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HinfI	GANTC	2 cut(s)	395, 752
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	2 cut(s)	299, 943
Hpy188III	TCNNGA	4 cut(s)	142, 512, 683, 777
Hpy8I	GTNNAC	1 cut(s)	813
HpyAV	CCTTC	7 cut(s)	279, 288, 352, 521, 563, 686, 815
HpyCH4III	ACNGT	2 cut(s)	710, 724
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	392, 640, 805, 924
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 242, 625, 656
HpyF3I	CTNAG	2 cut(s)	467, 872
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	2 cut(s)	114, 255
Hsp92II	CATG	4 cut(s)	349, 654, 668, 841
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	2 cut(s)	459, 569
LweI	GCATC	5 cut(s)	214, 223, 379, 646, 814
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	512, 833
MalI	GATC	6 cut(s)	301, 305, 321, 406, 781, 888
MboI	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
MboII	GAAGA	5 cut(s)	452, 830, 855, 866, 916
MluCI	AATT	3 cut(s)	57, 783, 877
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	389
Mph1103I	ATGCAT	1 cut(s)	807
MroI	TCCGGA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	4 cut(s)	5, 15, 590, 713
MspA1I	CMGCKG	1 cut(s)	969
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	233, 242, 625, 656
NarI	GGCGCC	1 cut(s)	114
NdeII	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
NlaIII	CATG	4 cut(s)	349, 654, 668, 841
NlaIV	GGNNCC	3 cut(s)	115, 607, 681
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	1 cut(s)	668
PciI	ACATGT	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	752
PkrI	GCNGC	4 cut(s)	212, 229, 449, 584
Ple19I	CGATCG	1 cut(s)	302
PleI	GAGTC	1 cut(s)	389
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	389
PscI	ACATGT	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	3 cut(s)	115, 607, 681
PspPI	GGNCC	1 cut(s)	680
PstI	CTGCAG	1 cut(s)	642
PvuI	CGATCG	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	969
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
SaqAI	TTAA	4 cut(s)	5, 15, 590, 713
SatI	GCNGC	4 cut(s)	211, 228, 448, 583
Sau3AI	GATC	6 cut(s)	299, 303, 319, 404, 779, 886
Sau96I	GGNCC	1 cut(s)	680
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	332
SfaNI	GCATC	5 cut(s)	214, 223, 379, 646, 814
SfcI	CTRYAG	2 cut(s)	638, 741
SfoI	GGCGCC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	680
Sse9I	AATT	3 cut(s)	57, 783, 877
SsiI	CCGC	5 cut(s)	210, 227, 230, 265, 431
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	710, 724
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	302, 318
TasI	AATT	3 cut(s)	57, 783, 877
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	2 cut(s)	213, 230
TfiI	GAWTC	1 cut(s)	752
Tru1I	TTAA	4 cut(s)	5, 15, 590, 713
Tru9I	TTAA	4 cut(s)	5, 15, 590, 713
TscAI	CASTG	2 cut(s)	68, 888
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	2 cut(s)	447, 582
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	5 cut(s)	355, 528, 540, 765, 812
TspRI	CASTG	2 cut(s)	68, 888
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	2 cut(s)	57, 877
XceI	RCATGY	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.