Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Forward (+)

4698119 .. 4701889

Gene Structure 3771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGCAGCGATGGGATTGATGCGGAGAATGCCTCCCAAGCACACCGAGACGGCTCTCTCCGCCCTCCTCTCCCTTATGCCCCAACACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCCCTCCAGGTTTTGTGCGATATGGAGTATGGGAAGGAGTTCATTTTGTGTGAATATAATAGAGATGCAGACTCTTACAGATCACCTTGGTCAAATAAATATCATCCACCATTAGAAGACGGCAGCCTCCCGTCTGAAGAGTTGAGGAAACTTGAAATTGAAGCAAACGACATCTTTGCCATTTATCGTGACCAGTATTATGAAGGTGGAATTTCATCAGTTTACATGTGGGAGGATGATAACGAATGTTTTGTAGGCTGCTTTTTAATAAAAAAAGACGGCTCCAAGACAGGTCAAGGTCGCAGAGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTAATTGAGGTGGGTCCGGAGGAGGAAGGAACATCCCATTACCGCTTAACCAGCACTGTCATGCTGTCTCTGACTACAGACAATGAGTCATCAGGCACTTTCAGTTTGTCTGGATCAATTAGACGACAGATGAATATGCACCTCTCAGTTCAAGAAGGTCATCTTTGTAACATGGGAAGAATGATCGAAGAAATGGAGAGCAAGCTGAGAAATTCACTGGATCAGGTTTATTTTGGGAAGACGAAAGAGATGGTTTGCACTTTACGACCACCATCTGAAGTAGTGATGAGACTGCCTGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008290 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

256

Amino Acids

29.05

Weight (kDa)

4.89

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	3 cut(s)	25, 63, 505
AclWI	GGATC	2 cut(s)	583, 690
AcsI	RAATTY	2 cut(s)	330, 673
AcuI	CTGAAG	2 cut(s)	276, 759
AflIII	ACRYGT	2 cut(s)	345, 460
AgsI	TTSAA	3 cut(s)	275, 281, 614
AhdI	GACNNNNNGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	667, 765
AluI	AGCT	2 cut(s)	667, 765
Alw26I	GTCTC	3 cut(s)	44, 534, 745
AlwI	GGATC	2 cut(s)	583, 690
Aor13HI	TCCGGA	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	8, 243, 378
ApoI	RAATTY	2 cut(s)	330, 673
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	243, 707
BbvI	GCAGC	3 cut(s)	20, 255, 365
BccI	CCATC	3 cut(s)	7, 706, 742
BceAI	ACGGC	3 cut(s)	69, 256, 415
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	44, 534, 745
BfmI	CTRYAG	2 cut(s)	434, 537
BisI	GCNGC	3 cut(s)	9, 244, 379
BlsI	GCNGC	3 cut(s)	10, 245, 380
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	476
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	403, 477
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	12, 175, 442
BpiI	GAAGAC	2 cut(s)	243, 707
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	478
Bse1I	ACTGG	2 cut(s)	313, 684
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	223, 361, 457, 494
BseMII	CTCAG	2 cut(s)	621, 659
BseNI	ACTGG	2 cut(s)	313, 684
BseRI	GAGGAG	4 cut(s)	59, 82, 92, 497
BseXI	GCAGC	3 cut(s)	20, 255, 365
BsiSI	CCGG	1 cut(s)	479
BsmAI	GTCTC	3 cut(s)	44, 534, 745
BsmBI	CGTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
BspACI	CCGC	3 cut(s)	25, 63, 505
BspCNI	CTCAG	2 cut(s)	620, 660
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	403, 477
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	2 cut(s)	583, 690
BsrI	ACTGG	2 cut(s)	313, 684
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	607, 668
BstF5I	GGATG	4 cut(s)	223, 361, 457, 494
BstKTI	GATC	6 cut(s)	100, 118, 203, 578, 648, 685
BstMAI	GTCTC	3 cut(s)	44, 534, 745
BstMBI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 452, 513
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	2 cut(s)	349, 464
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	434, 537
BstV1I	GCAGC	3 cut(s)	20, 255, 365
BstV2I	GAAGAC	2 cut(s)	243, 707
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	4 cut(s)	223, 361, 457, 494
BtsIMutI	CAGTG	2 cut(s)	516, 677
Cac8I	GCNNGC	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	476
CviAII	CATG	5 cut(s)	346, 447, 461, 523, 634
CviJI	RGCY	7 cut(s)	56, 121, 246, 378, 402, 667, 765
CviKI_1	RGCY	7 cut(s)	56, 121, 246, 378, 402, 667, 765
DdeI	CTNAG	2 cut(s)	607, 668
DpnI	GATC	6 cut(s)	99, 117, 202, 577, 647, 684
DpnII	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
DriI	GACNNNNNGTC	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	252
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	276, 759
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	5 cut(s)	349, 450, 464, 526, 637
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	5 cut(s)	345, 446, 460, 522, 633
Fnu4HI	GCNGC	3 cut(s)	9, 244, 379
FokI	GGATG	4 cut(s)	210, 368, 464, 481
Fsp4HI	GCNGC	3 cut(s)	9, 244, 379
GluI	GCNGC	3 cut(s)	9, 244, 379
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	5 cut(s)	349, 450, 464, 526, 637
HinfI	GANTC	2 cut(s)	191, 548
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	4 cut(s)	97, 256, 534, 739
Hpy188III	TCNNGA	4 cut(s)	308, 479, 573, 614
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	4 cut(s)	148, 317, 482, 611
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	4 cut(s)	188, 436, 601, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 452, 513
HpyF3I	CTNAG	2 cut(s)	607, 668
Hsp92II	CATG	5 cut(s)	349, 450, 464, 526, 637
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	3 cut(s)	20, 255, 365
LweI	GCATC	3 cut(s)	12, 175, 442
MaeIII	GTNAC	2 cut(s)	308, 629
MalI	GATC	6 cut(s)	99, 117, 202, 577, 647, 684
MboI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
MboII	GAAGA	5 cut(s)	248, 269, 651, 662, 712
MluCI	AATT	5 cut(s)	276, 330, 465, 579, 673
MlyI	GAGTC	2 cut(s)	185, 557
MroI	TCCGGA	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	2 cut(s)	386, 509
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	765
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 452, 513
NdeII	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
NlaIII	CATG	5 cut(s)	349, 450, 464, 526, 637
NlaIV	GGNNCC	2 cut(s)	403, 477
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	349, 464
PciI	ACATGT	2 cut(s)	345, 460
PctI	GAATGC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	10, 245, 380
PleI	GAGTC	2 cut(s)	185, 556
PpsI	GAGTC	2 cut(s)	185, 556
PscI	ACATGT	2 cut(s)	345, 460
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	403, 477
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	386, 509
SatI	GCNGC	3 cut(s)	9, 244, 379
Sau3AI	GATC	6 cut(s)	97, 115, 200, 575, 645, 682
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	185, 557
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	3 cut(s)	12, 175, 442
SfcI	CTRYAG	2 cut(s)	434, 537
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	5 cut(s)	276, 330, 465, 579, 673
SsiI	CCGC	3 cut(s)	25, 63, 505
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	114, 648
TasI	AATT	5 cut(s)	276, 330, 465, 579, 673
Tru1I	TTAA	2 cut(s)	386, 509
Tru9I	TTAA	2 cut(s)	386, 509
TscAI	CASTG	2 cut(s)	523, 684
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	8, 243, 378
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	151, 324, 336, 608
TspRI	CASTG	2 cut(s)	523, 684
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	330, 673
XceI	RCATGY	2 cut(s)	349, 464
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.