Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Reverse (-)

10123257 .. 10123706

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0076100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCAAGGTAAGGGAGTGATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTTGAACATGAAGCAGTTGGGGCCTTTCTCACGCATTGCGGGTGGAACTCTATCCTTGAAGGAGTCTCTGCTGGTGTACCAATGATAACGTGGCCGGTGTCTGCAGGGCAGTTTTACCATGAGAAGTTGGTGACTCAGATACTTGGAATTGGGGTGGGTTTCTGTTGGTGTTCAAAAGTGGCAACATTTGAGGATGACAGTCTGAAGAGTGAAGCCAGTGTGAAGAGGGATGACATAGAAAAGGCTGTGACTGAAATCATGGTGAGTGATAAAAAAGAGGAAATGAGAAGCAAAGTTTCTGCGCTCAGAGATATGGCAAGGAGGGCAGTTGAAGAAGGTGGTTCCTCATTCTCCCAATTAGCTACTCTTATTGAAGATTTGAGGTCCCTTCAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008290 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

5.39

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	5 - 56	5e-13	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AciI	CCGC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	275, 425
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	56, 110, 225, 383, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	72, 143
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	72, 435
AsuHPI	GGTGA	2 cut(s)	193, 325
AvaII	GGWCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	72, 435
BmiI	GGNNCC	4 cut(s)	36, 73, 394, 437
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	250, 286
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	200, 370
BseNI	ACTGG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	74, 145
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	74, 145
Bsp1286I	GDGCHC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	2 cut(s)	74, 145
BspCNI	CTCAG	2 cut(s)	199, 369
BspLI	GGNNCC	4 cut(s)	36, 73, 394, 437
BspMAI	CTGCAG	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	251, 269
BstDEI	CTNAG	2 cut(s)	186, 356
BstF5I	GGATG	2 cut(s)	250, 286
BstHHI	GCGC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 374
BstSFI	CTRYAG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	74, 145
BtsCI	GGATG	2 cut(s)	250, 286
BtsIMutI	CAGTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	72, 435
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	59, 170, 310
CviJI	RGCY	6 cut(s)	35, 74, 145, 266, 296, 413
CviKI_1	RGCY	6 cut(s)	35, 74, 145, 266, 296, 413
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	186, 356
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	251, 269
EarI	CTCTTC	2 cut(s)	251, 269
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	275, 425
EcoO109I	RGGNCCY	2 cut(s)	72, 435
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	3 cut(s)	62, 173, 313
FaiI	YATR	6 cut(s)	23, 60, 171, 287, 311, 365
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	58, 169, 309
FauI	CCCGC	1 cut(s)	83
FokI	GGATG	2 cut(s)	257, 293
FriOI	GRGCYC	1 cut(s)	37
GlaI	GCGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	74, 145
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	62, 173, 313
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	3 cut(s)	49, 114, 184
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	193, 325
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	189, 255, 359
Hpy188III	TCNNGA	2 cut(s)	53, 447
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	104, 380, 449
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	4, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 374
HpyF3I	CTNAG	2 cut(s)	186, 356
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	62, 173, 313
HspAI	GCGC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	108, 141, 159, 280
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	181, 298
MboII	GAAGA	4 cut(s)	268, 286, 395, 437
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	198, 407
MlyI	GAGTC	2 cut(s)	123, 178
MnlI	CCTC	7 cut(s)	20, 235, 270, 322, 366, 406, 426
MspI	CCGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	71, 374
NlaIII	CATG	3 cut(s)	62, 173, 313
NlaIV	GGNNCC	4 cut(s)	36, 73, 394, 437
NmuCI	GTSAC	2 cut(s)	181, 298
PfeI	GAWTC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	122, 178
PpsI	GAGTC	2 cut(s)	122, 178
PpuMI	RGGWCCY	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	435
PspN4I	GGNNCC	4 cut(s)	36, 73, 394, 437
PspPI	GGNCC	2 cut(s)	72, 435
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
Sau96I	GGNCC	2 cut(s)	72, 435
SchI	GAGTC	2 cut(s)	123, 178
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	10, 31, 143, 391, 415, 437
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	435
Sse9I	AATT	2 cut(s)	198, 407
SsiI	CCGC	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	143
TasI	AATT	2 cut(s)	198, 407
TfiI	GAWTC	1 cut(s)	49
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	181, 298
Tsp45I	GTSAC	2 cut(s)	181, 298
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.