Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001180.1

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Reverse (-)

14237 .. 17188

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001180.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggaagcagcgatgggtttgatgcgaagaatgcctcccaagcacatcgacaccgctctctccgcgctcctctctcttcttccccagcactcctctgatctcctctctcaagtcgatcagccactccaggtcttgtgcgatgccgagtatggcaaggagttcattttgtgcgaatataatagagatgcagactcctacagcctcccatcggcggagttgaggcaacttgaaattgaagcaaacgacatctttgccgtttatcgtgaccagtattatgagggtggcatttcgtcggtttatatgtgggaggatgataatgaaggcttcgtaggctgctttttaataaagaaagatggctccaagactgggcaaggtcggagaggttatctgcaggagggggcatgggatgctatacatgttgttgaggtgggtccagaggaggaaggaacaaccaattaccgtttaaccagcactgtaatgctatctttgactactgataatgagtcatctggcacattcagtttgtctggatcaattagaagacagatgaacatgaggctctcagttcaagaaggccatctgtgtaatatgggaaaaatgatagaagaaatggagagtaagctgcgaaactcactggatcaggtttactttgggaagacgaaagaaatggtttgcactctaagaccaccagctgaagttgtgatgagactgcctgacagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008290 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

4.73

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	65
AciI	CCGC	3 cut(s)	54, 63, 212
AclWI	GGATC	2 cut(s)	538, 645
AcuI	CTGAAG	1 cut(s)	714
AfiI	CCNNNNNNNGG	3 cut(s)	208, 211, 366
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	230, 236, 569
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	622, 692, 720
AluI	AGCT	3 cut(s)	622, 692, 720
Alw26I	GTCTC	1 cut(s)	700
AlwI	GGATC	2 cut(s)	538, 645
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	3 cut(s)	8, 333, 622
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	431
BbsI	GAAGAC	2 cut(s)	547, 662
BbvI	GCAGC	3 cut(s)	20, 320, 609
BccI	CCATC	4 cut(s)	7, 214, 347, 585
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	700
BfmI	CTRYAG	2 cut(s)	196, 389
BisI	GCNGC	3 cut(s)	9, 334, 623
BlsI	GCNGC	3 cut(s)	10, 335, 624
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	358, 432
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	4 cut(s)	12, 130, 175, 397
BmuI	ACTGGG	1 cut(s)	375
BpiI	GAAGAC	2 cut(s)	547, 662
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 211, 366
Bse1I	ACTGG	3 cut(s)	268, 370, 639
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	316, 412
BseLI	CCNNNNNNNGG	3 cut(s)	208, 211, 366
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	268, 370, 639
BseRI	GAGGAG	4 cut(s)	59, 82, 92, 452
BseXI	GCAGC	3 cut(s)	20, 320, 609
BseYI	CCCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	576
BslI	CCNNNNNNNGG	3 cut(s)	208, 211, 366
BsmAI	GTCTC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	97, 115, 530, 637
BspACI	CCGC	3 cut(s)	54, 63, 212
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	575
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	358, 432
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	2 cut(s)	538, 645
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	268, 370, 639
BssMI	GATC	4 cut(s)	97, 115, 530, 637
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	461, 475
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	562, 680
BstF5I	GGATG	2 cut(s)	316, 412
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	100, 118, 533, 640
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	4 cut(s)	97, 115, 530, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 330, 407
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	196, 389
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	20, 320, 609
BstV2I	GAAGAC	2 cut(s)	547, 662
BsuRI	GGCC	1 cut(s)	576
BtgZI	GCGATG	2 cut(s)	26, 153
BtsCI	GGATG	2 cut(s)	316, 412
BtsIMutI	CAGTG	2 cut(s)	471, 632
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	431
CviAII	CATG	3 cut(s)	402, 416, 553
DdeI	CTNAG	2 cut(s)	562, 680
DpnI	GATC	4 cut(s)	99, 117, 532, 639
DpnII	GATC	4 cut(s)	97, 115, 530, 637
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	405, 419, 556
FatI	CATG	3 cut(s)	401, 415, 552
Fnu4HI	GCNGC	3 cut(s)	9, 334, 623
FokI	GGATG	2 cut(s)	323, 419
Fsp4HI	GCNGC	3 cut(s)	9, 334, 623
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	9, 334, 623
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	576
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	405, 419, 556
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	191, 503
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	2 cut(s)	97, 378
Hpy188III	TCNNGA	4 cut(s)	263, 434, 528, 569
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	314, 437, 566
HpyCH4III	ACNGT	2 cut(s)	461, 475
HpyCH4V	TGCA	3 cut(s)	188, 391, 675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 330, 407
HpyF3I	CTNAG	2 cut(s)	562, 680
Hsp92II	CATG	3 cut(s)	405, 419, 556
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	4 cut(s)	97, 115, 530, 637
LmnI	GCTCC	2 cut(s)	72, 362
Lsp1109I	GCAGC	3 cut(s)	20, 320, 609
LweI	GCATC	4 cut(s)	12, 130, 175, 397
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	99, 117, 532, 639
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	4 cut(s)	97, 115, 530, 637
MboII	GAAGA	6 cut(s)	39, 68, 71, 552, 617, 667
MluCI	AATT	3 cut(s)	231, 454, 534
MlyI	GAGTC	2 cut(s)	185, 512
MmeI	TCCRAC	1 cut(s)	356
MseI	TTAA	2 cut(s)	341, 464
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	2 cut(s)	692, 720
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 330, 407
NdeII	GATC	4 cut(s)	97, 115, 530, 637
NlaIII	CATG	3 cut(s)	405, 419, 556
NlaIV	GGNNCC	2 cut(s)	358, 432
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	419
PciI	ACATGT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	10, 335, 624
PleI	GAGTC	2 cut(s)	185, 511
PpsI	GAGTC	2 cut(s)	185, 511
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	358, 432
PspPI	GGNCC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	393
PvuII	CAGCTG	2 cut(s)	692, 720
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	341, 464
SatI	GCNGC	3 cut(s)	9, 334, 623
Sau3AI	GATC	4 cut(s)	97, 115, 530, 637
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	2 cut(s)	185, 512
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	8 cut(s)	132, 376, 385, 429, 624, 645, 694, 722
SfaNI	GCATC	4 cut(s)	12, 130, 175, 397
SfcI	CTRYAG	2 cut(s)	196, 389
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	231, 454, 534
SsiI	CCGC	3 cut(s)	54, 63, 212
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	461, 475
TaqI	TCGA	2 cut(s)	48, 114
TasI	AATT	3 cut(s)	231, 454, 534
Tru1I	TTAA	2 cut(s)	341, 464
Tru9I	TTAA	2 cut(s)	341, 464
TscAI	CASTG	2 cut(s)	478, 639
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	8, 333, 622
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	151, 333, 563
TspRI	CASTG	2 cut(s)	478, 639
VpaK11BI	GGWCC	1 cut(s)	431
XceI	RCATGY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.