Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001419.1

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Forward (+)

12903 .. 16090

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001419.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggaagcagcgatgggtttgatgcgaagaatgcctcccaagcacatcgacaccgctctctccgcgctcctctctcttcttccccagcactcctctgatctcctctctcaagtcgatcagccactccaggtcttgtgcgatgccgagtatggcaaggagttcattttgtgcgaatataatagagatgcagactcctacagatcaccttggtcaaatgtatatcatccgccgttggaagatggcagcctcccatcggcggagttgaggcaacttgaaattgaagcaaacgacatctttgccgtttatcgtgaccagtattatgagggtggcatttcgtcggtttatatgtgggaggatgataatgaaggcttcgtaggctgctttttaataaagaaagatggctccaagactgggcaaggtcggagaggttatctgcaggagggggcatgggatgctatacatgttgttgaggtgggtccagaggaggaaggaacaaccaattaccgtttaaccagcactgtaatgctatctttgactaccgataatgagtcatctggcacattcagtttgtctggatcaattagaagacagatgaacatgaggctctcagttcaagaaggccatctgtgtaatatgggaaaaatgatagaagaaatggagagtaagctgcgaaactcactggatcaggtttactttgggaagacgaaagaaatggtttgcactctaagaccaccagctgaagttgtgatgagactgcctgacagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008290 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

255

Amino Acids

28.77

Weight (kDa)

4.76

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	54, 63, 227, 257
AclWI	GGATC	2 cut(s)	583, 690
AcuI	CTGAAG	1 cut(s)	759
AfiI	CCNNNNNNNGG	3 cut(s)	253, 256, 411
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	275, 281, 614
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	667, 737, 765
AluI	AGCT	3 cut(s)	667, 737, 765
Alw26I	GTCTC	1 cut(s)	745
AlwI	GGATC	2 cut(s)	583, 690
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	4 cut(s)	8, 243, 378, 667
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	592, 707
BbvI	GCAGC	4 cut(s)	20, 255, 365, 654
BccI	CCATC	5 cut(s)	7, 233, 259, 392, 630
BceAI	ACGGC	2 cut(s)	214, 284
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	745
BfmI	CTRYAG	2 cut(s)	196, 434
BisI	GCNGC	4 cut(s)	9, 244, 379, 668
BlsI	GCNGC	4 cut(s)	10, 245, 380, 669
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	403, 477
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	4 cut(s)	12, 130, 175, 442
BmuI	ACTGGG	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	592, 707
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 256, 411
Bse1I	ACTGG	3 cut(s)	313, 415, 684
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	3 cut(s)	223, 361, 457
BseLI	CCNNNNNNNGG	3 cut(s)	253, 256, 411
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	3 cut(s)	313, 415, 684
BseRI	GAGGAG	4 cut(s)	59, 82, 92, 497
BseXI	GCAGC	4 cut(s)	20, 255, 365, 654
BseYI	CCCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	621
BslI	CCNNNNNNNGG	3 cut(s)	253, 256, 411
BsmAI	GTCTC	1 cut(s)	745
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	621
Bsp143I	GATC	5 cut(s)	97, 115, 200, 575, 682
BspACI	CCGC	4 cut(s)	54, 63, 227, 257
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	403, 477
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	2 cut(s)	583, 690
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	313, 415, 684
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	5 cut(s)	97, 115, 200, 575, 682
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	506, 520
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstDEI	CTNAG	2 cut(s)	607, 725
BstF5I	GGATG	3 cut(s)	223, 361, 457
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	5 cut(s)	100, 118, 203, 578, 685
BstMAI	GTCTC	1 cut(s)	745
BstMBI	GATC	5 cut(s)	97, 115, 200, 575, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 375, 452
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	2 cut(s)	196, 434
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	20, 255, 365, 654
BstV2I	GAAGAC	2 cut(s)	592, 707
BsuRI	GGCC	1 cut(s)	621
BtgZI	GCGATG	2 cut(s)	26, 153
BtsCI	GGATG	3 cut(s)	223, 361, 457
BtsIMutI	CAGTG	2 cut(s)	516, 677
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	476
CviAII	CATG	3 cut(s)	447, 461, 598
DdeI	CTNAG	2 cut(s)	607, 725
DpnI	GATC	5 cut(s)	99, 117, 202, 577, 684
DpnII	GATC	5 cut(s)	97, 115, 200, 575, 682
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	2 cut(s)	216, 272
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	450, 464, 601
FatI	CATG	3 cut(s)	446, 460, 597
Fnu4HI	GCNGC	4 cut(s)	9, 244, 379, 668
FokI	GGATG	3 cut(s)	210, 368, 464
Fsp4HI	GCNGC	4 cut(s)	9, 244, 379, 668
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	9, 244, 379, 668
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	621
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	450, 464, 601
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	191, 548
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	2 cut(s)	97, 423
Hpy188III	TCNNGA	4 cut(s)	308, 479, 573, 614
Hpy8I	GTNNAC	1 cut(s)	691
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	359, 482, 611
HpyCH4III	ACNGT	2 cut(s)	506, 520
HpyCH4V	TGCA	3 cut(s)	188, 436, 720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 375, 452
HpyF3I	CTNAG	2 cut(s)	607, 725
Hsp92II	CATG	3 cut(s)	450, 464, 601
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	5 cut(s)	97, 115, 200, 575, 682
LmnI	GCTCC	2 cut(s)	72, 407
Lsp1109I	GCAGC	4 cut(s)	20, 255, 365, 654
LweI	GCATC	4 cut(s)	12, 130, 175, 442
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	5 cut(s)	99, 117, 202, 577, 684
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	5 cut(s)	97, 115, 200, 575, 682
MboII	GAAGA	7 cut(s)	39, 68, 71, 248, 597, 662, 712
MluCI	AATT	3 cut(s)	276, 499, 579
MlyI	GAGTC	2 cut(s)	185, 557
MmeI	TCCRAC	2 cut(s)	213, 401
MseI	TTAA	2 cut(s)	386, 509
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	737, 765
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	5 cut(s)	31, 40, 62, 375, 452
NdeII	GATC	5 cut(s)	97, 115, 200, 575, 682
NlaIII	CATG	3 cut(s)	450, 464, 601
NlaIV	GGNNCC	2 cut(s)	403, 477
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	10, 245, 380, 669
PleI	GAGTC	2 cut(s)	185, 556
PpsI	GAGTC	2 cut(s)	185, 556
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	403, 477
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	438
PvuII	CAGCTG	2 cut(s)	737, 765
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	386, 509
SatI	GCNGC	4 cut(s)	9, 244, 379, 668
Sau3AI	GATC	5 cut(s)	97, 115, 200, 575, 682
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	185, 557
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	9 cut(s)	132, 208, 421, 430, 474, 669, 690, 739, 767
SfaNI	GCATC	4 cut(s)	12, 130, 175, 442
SfcI	CTRYAG	2 cut(s)	196, 434
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	276, 499, 579
SsiI	CCGC	4 cut(s)	54, 63, 227, 257
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	506, 520
TaqI	TCGA	2 cut(s)	48, 114
TasI	AATT	3 cut(s)	276, 499, 579
Tru1I	TTAA	2 cut(s)	386, 509
Tru9I	TTAA	2 cut(s)	386, 509
TscAI	CASTG	2 cut(s)	523, 684
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	4 cut(s)	8, 243, 378, 667
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	151, 378, 608
TspRI	CASTG	2 cut(s)	523, 684
VpaK11BI	GGWCC	1 cut(s)	476
XceI	RCATGY	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.