Rroxscaffold_7G00195230

F-actin-capping protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010468
Physical Location & Seq
Forward (+)
37514058 .. 37517345
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195230.1

Sequence Viewer

Length: 696 bp
ATGCCGAGTATGGCAAGGAGTTCATTTTGTGCGAATATAATAGAGACGCAGACTCCTACAGGTGAAATCAACACTGCCAAATCACCTTGGTCAAATGTATATCATCCACCGTTGGAAGATGGCAGCCTCCCATCTGCGGAGTTGAGGCAACTTGAAATTGAAGCAAACGACATCTTTGCCGTTTATCGTGACCAGTATTATGAGGGTGGCATTTCGTCAGTTTATATGTGGGAGGATGATAATGAAGGCTTCGTAGGCTGCTTTTTTAATAAAGAAAGATGGCTCCAAGACTGGGCAAGGTCGGAGAGGTTATCTGCAGGAGGGGGGGCATGGGATGCTATACATGTTATTGAGGTGGGTCCAGAGGAGGAAGGAACAACCAATTACCGTTTAACTAGCACTGTAATGCTATCTTTGACTACCGATAACGAGTCATCTGGCACATTCAGTTTGTCTGGATCAATTAGAAGACAGGTTTGGTATCTTGTTTGTCACGCATCAACTTCTTCTGGACAGTTTATGAACATGAGGCTCTCAGTTCATGAAGGCCATCTGTGTAATATGGGAAAAATGATAGAAGAAATGGAGAGTAAGCTGCGAAACTCACTGGATCAGGTTTACTTTGGGAAGACGAAAGAAATGGTTTGCACTCTAAGACCACCAGCTGAAGTTGTGATGAGACTGCCTGACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F_actin_cap_B

Protein Analysis

231

Amino Acids

26.03

Weight (kDa)

4.8

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F_actin_cap_B PF01115 27 - 215 2.2e-60 F-actin capping protein, beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 466, 618
AcuI CTGAAG 1 cut(s) 687
AfiI CCNNNNNNNGG 2 cut(s) 136, 292
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 2 cut(s) 155, 161
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 3 cut(s) 595, 665, 693
AluI AGCT 3 cut(s) 595, 665, 693
Alw26I GTCTC 2 cut(s) 38, 673
AlwI GGATC 2 cut(s) 466, 618
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 3 cut(s) 123, 258, 595
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 74, 75
AvaII GGWCC 1 cut(s) 359
BbsI GAAGAC 2 cut(s) 475, 635
BbvI GCAGC 3 cut(s) 135, 245, 582
BccI CCATC 4 cut(s) 113, 139, 273, 558
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcoDI GTCTC 2 cut(s) 38, 673
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 2 cut(s) 57, 315
BisI GCNGC 3 cut(s) 124, 259, 596
BlsI GCNGC 3 cut(s) 125, 260, 597
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 284, 360
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 2 cut(s) 325, 506
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 2 cut(s) 475, 635
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 292
Bse1I ACTGG 3 cut(s) 193, 296, 612
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 3 cut(s) 103, 241, 340
BseLI CCNNNNNNNGG 2 cut(s) 136, 292
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 193, 296, 612
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 3 cut(s) 135, 245, 582
BshFI GGCC 1 cut(s) 549
BslI CCNNNNNNNGG 2 cut(s) 136, 292
BsmAI GTCTC 2 cut(s) 38, 673
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 549
Bsp143I GATC 2 cut(s) 458, 610
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 1 cut(s) 548
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 284, 360
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 2 cut(s) 466, 618
BsrI ACTGG 3 cut(s) 193, 296, 612
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 458, 610
BssT1I CCWWGG 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 111, 389, 403, 516
BstAPI GCANNNNNTGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 535, 653
BstF5I GGATG 3 cut(s) 103, 241, 340
BstKTI GATC 2 cut(s) 461, 613
BstMAI GTCTC 2 cut(s) 38, 673
BstMBI GATC 2 cut(s) 458, 610
BstMWI GCNNNNNNNGC 2 cut(s) 255, 335
BstNSI RCATGY 1 cut(s) 347
BstSFI CTRYAG 2 cut(s) 57, 315
BstV1I GCAGC 3 cut(s) 135, 245, 582
BstV2I GAAGAC 2 cut(s) 475, 635
BsuRI GGCC 1 cut(s) 549
BtsCI GGATG 3 cut(s) 103, 241, 340
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 3 cut(s) 72, 399, 605
CciI TCATGA 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 1 cut(s) 55
CviAII CATG 4 cut(s) 330, 344, 526, 542
CviJI RGCY 9 cut(s) 126, 249, 258, 283, 532, 549, 595, 665, 693
CviKI_1 RGCY 9 cut(s) 126, 249, 258, 283, 532, 549, 595, 665, 693
DdeI CTNAG 2 cut(s) 535, 653
DpnI GATC 2 cut(s) 460, 612
DpnII GATC 2 cut(s) 458, 610
Eco130I CCWWGG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 4 cut(s) 333, 347, 529, 545
FatI CATG 4 cut(s) 329, 343, 525, 541
Fnu4HI GCNGC 3 cut(s) 124, 259, 596
FokI GGATG 3 cut(s) 90, 248, 347
Fsp4HI GCNGC 3 cut(s) 124, 259, 596
FspBI CTAG 1 cut(s) 396
GluI GCNGC 3 cut(s) 124, 259, 596
HaeIII GGCC 1 cut(s) 549
HgaI GACGC 1 cut(s) 55
Hin1II CATG 4 cut(s) 333, 347, 529, 545
HinfI GANTC 2 cut(s) 52, 431
HphI GGTGA 2 cut(s) 74, 75
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 5 cut(s) 188, 362, 456, 510, 542
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 3 cut(s) 239, 365, 539
HpyCH4III ACNGT 4 cut(s) 111, 389, 403, 516
HpyCH4V TGCA 2 cut(s) 317, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 335
HpyF3I CTNAG 2 cut(s) 535, 653
Hsp92II CATG 4 cut(s) 333, 347, 529, 545
Kzo9I GATC 2 cut(s) 458, 610
LmnI GCTCC 1 cut(s) 288
Lsp1109I GCAGC 3 cut(s) 135, 245, 582
LweI GCATC 2 cut(s) 325, 506
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 188, 491
MalI GATC 2 cut(s) 460, 612
MboI GATC 2 cut(s) 458, 610
MboII GAAGA 5 cut(s) 128, 480, 498, 590, 640
MluCI AATT 3 cut(s) 156, 382, 462
MlyI GAGTC 2 cut(s) 46, 440
MmeI TCCRAC 2 cut(s) 93, 282
MseI TTAA 2 cut(s) 267, 392
MslI CAYNNNNRTG 1 cut(s) 404
MspA1I CMGCKG 2 cut(s) 665, 693
MwoI GCNNNNNNNGC 2 cut(s) 255, 335
NdeII GATC 2 cut(s) 458, 610
NlaIII CATG 4 cut(s) 333, 347, 529, 545
NlaIV GGNNCC 2 cut(s) 284, 360
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 188, 491
NspI RCATGY 1 cut(s) 347
PagI TCATGA 1 cut(s) 541
PciI ACATGT 1 cut(s) 343
PkrI GCNGC 3 cut(s) 125, 260, 597
PleI GAGTC 2 cut(s) 46, 439
PpsI GAGTC 2 cut(s) 46, 439
PscI ACATGT 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 284, 360
PspPI GGNCC 1 cut(s) 359
PstI CTGCAG 1 cut(s) 319
PvuII CAGCTG 2 cut(s) 665, 693
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 2 cut(s) 267, 392
SatI GCNGC 3 cut(s) 124, 259, 596
Sau3AI GATC 2 cut(s) 458, 610
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 2 cut(s) 46, 440
SfaNI GCATC 2 cut(s) 325, 506
SfcI CTRYAG 2 cut(s) 57, 315
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 404
Sse9I AATT 3 cut(s) 156, 382, 462
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 4 cut(s) 111, 389, 403, 516
TasI AATT 3 cut(s) 156, 382, 462
Tru1I TTAA 2 cut(s) 267, 392
Tru9I TTAA 2 cut(s) 267, 392
TscAI CASTG 3 cut(s) 79, 406, 612
TseFI GTSAC 2 cut(s) 188, 491
TseI GCWGC 3 cut(s) 123, 258, 595
Tsp45I GTSAC 2 cut(s) 188, 491
TspDTI ATGAA 5 cut(s) 12, 258, 530, 536, 558
TspRI CASTG 3 cut(s) 79, 406, 612
VpaK11BI GGWCC 1 cut(s) 359
XceI RCATGY 1 cut(s) 347
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.