Rh6AG190800

F-actin-capping protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010468
Physical Location & Seq
Reverse (-)
34110428 .. 34114533
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG190800.1

Sequence Viewer

Length: 471 bp
ATGTGGGAGGATGATAATGAAGGCTTCGTAGGCTGCTTTTTAATAAAGAAAGATGGCTCCAAGACTGGGCAAGGTCGGAGAGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTTGTTGAGGTGGGTCCAGAGGAGGAAGGAACAACCAATTACCGTTTAACCAGCACTGTAATGCTATCTTTGACTACCGATAATGAGTCATCTGGCACATTCAGTTTGTCTGGATCAATTAGAAGACAGATGAACATGAGGCTTTCAGTTCACGAAGGCCATCTGTGTAATATGGGAAGAATGATAGAAGAAATGGAGAGTAAGCTGCGAAACTCACTGGATCAGGTACTGTGGTTTCTTTTGTGTGTATTTCAACTCTCTAAATTCCCGTTATACAGTCAAAAACAATATTTCAAAAGTAGTGAACTATTGTGCAAGTTCTTTTACCACTTTAGCCATGCAATTGGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F_actin_cap_B

Protein Analysis

156

Amino Acids

17.95

Weight (kDa)

6.2

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F_actin_cap_B PF01115 1 - 116 4.4e-33 F-actin capping protein, beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 238, 345
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 371, 412
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AlwI GGATC 2 cut(s) 238, 345
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 33, 322
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BaeI ACNNNNGTAYC 2 cut(s) 335, 368
BbsI GAAGAC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 20, 309
BccI CCATC 2 cut(s) 47, 285
BfmI CTRYAG 1 cut(s) 89
BisI GCNGC 2 cut(s) 34, 323
BlsI GCNGC 2 cut(s) 35, 324
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 58, 132
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 70, 339
BseGI GGATG 2 cut(s) 16, 112
BseLI CCNNNNNNNGG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 70, 339
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 20, 309
BshFI GGCC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 230, 337
BspANI GGCC 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 58, 132
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 2 cut(s) 238, 345
BsrI ACTGG 2 cut(s) 70, 339
BssMI GATC 2 cut(s) 230, 337
Bst4CI ACNGT 4 cut(s) 161, 175, 348, 395
BstAPI GCANNNNNTGC 1 cut(s) 107
BstF5I GGATG 2 cut(s) 16, 112
BstKTI GATC 2 cut(s) 233, 340
BstMBI GATC 2 cut(s) 230, 337
BstMWI GCNNNNNNNGC 2 cut(s) 30, 107
BstNSI RCATGY 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 20, 309
BstV2I GAAGAC 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 461
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 2 cut(s) 16, 112
BtsIMutI CAGTG 2 cut(s) 171, 332
CaiI CAGNNNCTG 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 344
CviAII CATG 4 cut(s) 102, 116, 253, 455
CviJI RGCY 7 cut(s) 24, 33, 57, 259, 276, 322, 453
CviKI_1 RGCY 7 cut(s) 24, 33, 57, 259, 276, 322, 453
CviQI GTAC 1 cut(s) 344
DpnI GATC 2 cut(s) 232, 339
DpnII GATC 2 cut(s) 230, 337
Eco47I GGWCC 1 cut(s) 131
FaeI CATG 4 cut(s) 105, 119, 256, 458
FaiI YATR 7 cut(s) 103, 113, 117, 254, 290, 391, 456
FatI CATG 4 cut(s) 101, 115, 252, 454
Fnu4HI GCNGC 2 cut(s) 34, 323
FokI GGATG 2 cut(s) 23, 119
Fsp4HI GCNGC 2 cut(s) 34, 323
GluI GCNGC 2 cut(s) 34, 323
HaeIII GGCC 1 cut(s) 276
Hin1II CATG 4 cut(s) 105, 119, 256, 458
HinfI GANTC 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 268, 422
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 3 cut(s) 134, 228, 269
Hpy8I GTNNAC 2 cut(s) 268, 422
HpyAV CCTTC 3 cut(s) 14, 137, 266
HpyCH4III ACNGT 4 cut(s) 161, 175, 348, 395
HpyCH4V TGCA 3 cut(s) 91, 432, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 107
Hsp92II CATG 4 cut(s) 105, 119, 256, 458
Kzo9I GATC 2 cut(s) 230, 337
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 8 cut(s) 51, 77, 147, 181, 195, 213, 320, 326
Lsp1109I GCAGC 2 cut(s) 20, 309
LweI GCATC 1 cut(s) 97
MalI GATC 2 cut(s) 232, 339
MboI GATC 2 cut(s) 230, 337
MboII GAAGA 3 cut(s) 252, 306, 317
MfeI CAATTG 1 cut(s) 459
MluCI AATT 4 cut(s) 154, 234, 380, 459
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 7 cut(s) 74, 88, 118, 130, 133, 249, 459
MseI TTAA 2 cut(s) 41, 164
MslI CAYNNNNRTG 1 cut(s) 176
MunI CAATTG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 30, 107
NdeII GATC 2 cut(s) 230, 337
NlaIII CATG 4 cut(s) 105, 119, 256, 458
NlaIV GGNNCC 2 cut(s) 58, 132
NspI RCATGY 1 cut(s) 119
PciI ACATGT 1 cut(s) 115
PkrI GCNGC 2 cut(s) 35, 324
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PscI ACATGT 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 58, 132
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 41, 164
SatI GCNGC 2 cut(s) 34, 323
Sau3AI GATC 2 cut(s) 230, 337
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 212
SetI ASST 6 cut(s) 76, 85, 129, 324, 345, 470
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 4 cut(s) 154, 234, 380, 459
SspI AATATT 1 cut(s) 407
TaaI ACNGT 4 cut(s) 161, 175, 348, 395
TasI AATT 4 cut(s) 154, 234, 380, 459
Tru1I TTAA 2 cut(s) 41, 164
Tru9I TTAA 2 cut(s) 41, 164
TscAI CASTG 2 cut(s) 178, 339
TseI GCWGC 2 cut(s) 33, 322
TspDTI ATGAA 2 cut(s) 33, 263
TspRI CASTG 2 cut(s) 178, 339
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.