FvH4_2g12750

F-actin-capping protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010468
Physical Location & Seq
Reverse (-)
11200832 .. 11204306
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12750.t3

Sequence Viewer

Length: 768 bp
ATGGAAGCAGCGATGGGATTGATGCGAAGAATGCCCCCAAAGCACATCGACACCGCTCTCTCCGCCCTCCTCTCTCTTCTTCCCCACCACTCCTCCGATCTCCTCTCTCAAGTCGATCAGCCTCTCCAGGTTTTGTGTGATTCCGAGTATGGCAAGGACTTCATTCTTTGCGAGTATAACAGAGATGCAGACTCATACAGATCACCTTGGTCAAATGTCTATCATCCACCATTGGAAGATGGCACCCTCCCATCTTCCGAGTTGAGGCAACTTGAGATTGAAGCAAACGACATCTTTGCCGTTTATCGTGACCAGTACTATGAGGGTGGCATTTCATCAGTTTATATGTGGGAGGATGATAATGCTGGCTTTGTGGGCTGCTTTTTAATAAAAAAGGATGGCTCCAAGACAGGGCAAGGTCGGAGAGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTTATTGAGGTGGGTCCAGAGGAGGAAGGAACAACCAATTACCGTTTAACCAGCACTGTAATGCTATCTTTGACTACCGATAATGAGCCATCTGGCACATTCAGTTTGTCTGGTTCGCTTAGAAGACAGATGAATATGAGGCTCTCAGTTGAAGAAGGTCATCTGTGTAACATGGGAAGAATGATAGAAGAAATGGAGGGTAAGCTGCGAAACTCGCTGGAACAGGTTTATTTTGGGAAGACGAAAGAAATGGTTTGCACTCTAAGACCACCAGCTGAAGTAGTGATGAGACTGCCAAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F_actin_cap_B

Protein Analysis

256

Amino Acids

28.76

Weight (kDa)

4.86

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F_actin_cap_B PF01115 1 - 198 4.5e-80 F-actin capping protein, beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 2 cut(s) 54, 63
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 264, 411
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 2 cut(s) 281, 614
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 667, 737, 765
AluI AGCT 3 cut(s) 667, 737, 765
Alw26I GTCTC 1 cut(s) 745
ApeKI GCWGC 4 cut(s) 8, 378, 667, 762
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 592, 707
BbvI GCAGC 3 cut(s) 20, 365, 654
BccI CCATC 5 cut(s) 7, 233, 259, 392, 559
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 745
BfmI CTRYAG 1 cut(s) 434
BisI GCNGC 4 cut(s) 9, 379, 668, 763
BlsI GCNGC 4 cut(s) 10, 380, 669, 764
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 244, 403, 477
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 3 cut(s) 12, 175, 442
BpiI GAAGAC 2 cut(s) 592, 707
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 2 cut(s) 93, 293
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 411
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 4 cut(s) 223, 361, 403, 457
BseLI CCNNNNNNNGG 2 cut(s) 264, 411
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 4 cut(s) 59, 82, 92, 497
BseXI GCAGC 3 cut(s) 20, 365, 654
BshNI GGYRCC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 264, 411
BsmAI GTCTC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 97, 115, 200
BspACI CCGC 2 cut(s) 54, 63
BspCNI CTCAG 1 cut(s) 620
BspLI GGNNCC 3 cut(s) 244, 403, 477
BspMAI CTGCAG 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 97, 115, 200
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 506, 520
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 581, 607, 725
BstF5I GGATG 4 cut(s) 223, 361, 403, 457
BstKTI GATC 3 cut(s) 100, 118, 203
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 3 cut(s) 97, 115, 200
BstMWI GCNNNNNNNGC 6 cut(s) 31, 40, 62, 375, 452, 676
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 20, 365, 654
BstV2I GAAGAC 2 cut(s) 592, 707
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 4 cut(s) 223, 361, 403, 457
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 1 cut(s) 316
CviAII CATG 3 cut(s) 447, 461, 634
CviJI RGCY 9 cut(s) 121, 369, 378, 402, 550, 604, 667, 737, 765
CviKI_1 RGCY 9 cut(s) 121, 369, 378, 402, 550, 604, 667, 737, 765
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 581, 607, 725
DpnI GATC 3 cut(s) 99, 117, 202
DpnII GATC 3 cut(s) 97, 115, 200
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 450, 464, 637
FatI CATG 3 cut(s) 446, 460, 633
Fnu4HI GCNGC 4 cut(s) 9, 379, 668, 763
FokI GGATG 4 cut(s) 210, 368, 410, 464
Fsp4HI GCNGC 4 cut(s) 9, 379, 668, 763
GluI GCNGC 4 cut(s) 9, 379, 668, 763
GsuI CTGGAG 1 cut(s) 110
Hin1II CATG 3 cut(s) 450, 464, 637
HinfI GANTC 2 cut(s) 140, 191
HphI GGTGA 1 cut(s) 195
Hpy188I TCNGA 4 cut(s) 97, 145, 259, 423
Hpy188III TCNNGA 2 cut(s) 308, 479
HpyAV CCTTC 2 cut(s) 482, 611
HpyCH4III ACNGT 2 cut(s) 506, 520
HpyCH4V TGCA 3 cut(s) 188, 436, 720
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 40, 62, 375, 452, 676
HpyF3I CTNAG 3 cut(s) 581, 607, 725
Hsp92II CATG 3 cut(s) 450, 464, 637
Kzo9I GATC 3 cut(s) 97, 115, 200
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 3 cut(s) 20, 365, 654
LweI GCATC 3 cut(s) 12, 175, 442
MaeIII GTNAC 2 cut(s) 308, 629
MalI GATC 3 cut(s) 99, 117, 202
MbiI CCGCTC 1 cut(s) 56
MboI GATC 3 cut(s) 97, 115, 200
MluCI AATT 1 cut(s) 499
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 401
MseI TTAA 2 cut(s) 386, 509
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 737, 765
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 31, 40, 62, 375, 452, 676
NdeII GATC 3 cut(s) 97, 115, 200
NlaIII CATG 3 cut(s) 450, 464, 637
NlaIV GGNNCC 3 cut(s) 244, 403, 477
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 464
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 4 cut(s) 10, 380, 669, 764
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PscI ACATGT 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 244, 403, 477
PspPI GGNCC 1 cut(s) 476
PstI CTGCAG 1 cut(s) 438
PvuII CAGCTG 2 cut(s) 737, 765
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 2 cut(s) 386, 509
SatI GCNGC 4 cut(s) 9, 379, 668, 763
Sau3AI GATC 3 cut(s) 97, 115, 200
Sau96I GGNCC 1 cut(s) 476
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 128
SfaNI GCATC 3 cut(s) 12, 175, 442
SfcI CTRYAG 1 cut(s) 434
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 108, 272
SmoI CTYRAG 2 cut(s) 108, 272
Sse9I AATT 1 cut(s) 499
SsiI CCGC 2 cut(s) 54, 63
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 506, 520
TaqI TCGA 2 cut(s) 48, 114
TasI AATT 1 cut(s) 499
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 386, 509
Tru9I TTAA 2 cut(s) 386, 509
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 4 cut(s) 8, 378, 667, 762
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 151, 324, 608
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 476
XceI RCATGY 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.