AT1G72175

Protein of unknown function (DUF1232)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007874
Physical Location & Seq
Forward (+)
27157875 .. 27159735
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72175.2

Sequence Viewer

Length: 558 bp
ATGAATAGTCCACCGGAGAACGATCTTTGTTCGATATGTCATTCCCACTTCACCGCTCCTTGTCAAGCCAATTGTTCCCATTGGTTCTGCGGGAACTGCATTATGCTGGTGTGGAGGCATGGATCTACATTACAGCCATGTAAATGCCCTTTGTGTCGTCGTCATATTAGTTTGTTGGTTCCTTCAGAGGACACAATCAGAGACCGTAATGACGCTACAGTTAAGGAGGTTCTTGGTAATCTTGAAACTTACAACCGACTCTTTGGCGGGCGTTCAAGTAGTTTAGTTCAGAGGATGCAAGACCTGCCCTTCTTACTACGGAGGTTGTTGCGGGAAATGATGGATCCACAAAGAACGCTTCCACTTGTCATTAGGGCTCGGGTTTATATCGCAATGATTCTCAGTGCTGTTTACATAATCAGTCCAATAGATATCATTCCAGAAGGAGTTCTGGGGGTAGTCGGTTTGCTTGATGATCTACTCATAGCACTGATTTGTTTCCTCCATGTTGCTGCTCTGTACCGCTCGGTTCTCTATTTCCGTCATGCCGGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0007275 GO:0008150 GO:0009790 GO:0009792 GO:0032501 GO:0032502 GO:0043009 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1232 zf-C3HC4_3

Protein Analysis

185

Amino Acids

20.92

Weight (kDa)

8.37

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1232 PF06803 96 - 130 2.4e-09 Protein of unknown function (DUF1232)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 312
AccBSI CCGCTC 2 cut(s) 56, 525
AciI CCGC 5 cut(s) 54, 90, 267, 331, 523
AclWI GGATC 3 cut(s) 130, 338, 351
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 521
AgsI TTSAA 2 cut(s) 245, 276
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 3 cut(s) 130, 338, 351
Ama87I CYCGRG 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 447
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 378
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 499
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 312
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 378
BmiI GGNNCC 2 cut(s) 180, 345
BmsI GCATC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 399
BseGI GGATG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 415
BseXI GCAGC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 14, 549
BsmAI GTCTC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 4 cut(s) 22, 122, 343, 475
BspACI CCGC 5 cut(s) 54, 90, 267, 331, 523
BspCNI CTCAG 1 cut(s) 414
BspLI GGNNCC 2 cut(s) 180, 345
BspMI ACCTGC 1 cut(s) 312
BspPI GGATC 3 cut(s) 130, 338, 351
BspTNI GGTCTC 1 cut(s) 195
BsrBI CCGCTC 2 cut(s) 56, 525
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 548
BssAI RCCGGY 1 cut(s) 548
BssMI GATC 4 cut(s) 22, 122, 343, 475
Bst4CI ACNGT 2 cut(s) 206, 220
BstAPI GCANNNNNTGC 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 300
BstKTI GATC 4 cut(s) 25, 125, 346, 478
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 4 cut(s) 22, 122, 343, 475
BstMWI GCNNNNNNNGC 2 cut(s) 96, 304
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 2 cut(s) 122, 343
BstYI RGATCY 2 cut(s) 122, 343
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 409, 488
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 548
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 520
CviAII CATG 4 cut(s) 119, 138, 506, 545
CviJI RGCY 3 cut(s) 68, 136, 377
CviKI_1 RGCY 3 cut(s) 68, 136, 377
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 1 cut(s) 401
DpnI GATC 4 cut(s) 24, 124, 345, 477
DpnII GATC 4 cut(s) 22, 122, 343, 475
Eco24I GRGCYC 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 378
EcoRV GATATC 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 4 cut(s) 122, 141, 509, 548
FatI CATG 4 cut(s) 118, 137, 505, 544
FauI CCCGC 3 cut(s) 83, 260, 324
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 513
GluI GCNGC 1 cut(s) 513
HapII CCGG 2 cut(s) 14, 549
HgaI GACGC 1 cut(s) 221
Hin1II CATG 4 cut(s) 122, 141, 509, 548
HinfI GANTC 2 cut(s) 258, 397
HpaII CCGG 2 cut(s) 14, 549
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 11, 412
Hpy188I TCNGA 3 cut(s) 187, 200, 291
Hpy188III TCNNGA 3 cut(s) 242, 440, 555
Hpy8I GTNNAC 2 cut(s) 11, 412
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 3 cut(s) 192, 319, 437
HpyCH4III ACNGT 2 cut(s) 206, 220
HpyCH4V TGCA 2 cut(s) 99, 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 304
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 4 cut(s) 122, 141, 509, 548
Kzo9I GATC 4 cut(s) 22, 122, 343, 475
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 27, 92, 317, 437, 453
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 285
MalI GATC 4 cut(s) 24, 124, 345, 477
MbiI CCGCTC 2 cut(s) 56, 525
MboI GATC 4 cut(s) 22, 122, 343, 475
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 2 cut(s) 122, 343
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 1 cut(s) 70
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 6 cut(s) 108, 181, 220, 285, 315, 512
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 142
MspI CCGG 2 cut(s) 14, 549
MunI CAATTG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 96, 304
NdeII GATC 4 cut(s) 22, 122, 343, 475
NlaIII CATG 4 cut(s) 122, 141, 509, 548
NlaIV GGNNCC 2 cut(s) 180, 345
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 1 cut(s) 514
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 180, 345
PsuI RGATCY 2 cut(s) 122, 343
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 4 cut(s) 22, 122, 343, 475
SchI GAGTC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 379
SetI ASST 3 cut(s) 231, 306, 326
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 142
Sse9I AATT 1 cut(s) 70
SsiI CCGC 5 cut(s) 54, 90, 267, 331, 523
TaaI ACNGT 2 cut(s) 206, 220
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 70
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 409, 495
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 334, 530
TspRI CASTG 2 cut(s) 409, 495
XmnI GAANNNNTTC 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.