Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007874

Physical Location & Seq

Genomic Coordinates Reverse (-)

18932515 .. 18935816

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGACGGCCCTCCAGGCGGCGATCTGTGTTCGGTGTGCCATGGCAACTTCGACACTCCTTGTCAGGCCAATTGCTCTCACTGGTTTTGCGGAAATTGTATTATGCTTGTTTGGGATCATGGATCAACAGTTCGCCCTTGTAAATGCCCGCTATGTCGTCGTCCCATCACTTTGTTGGTTCCAAGTAGGGCTTCTTCAAGGCAGCTTGATAGGCCGGAGGTTGCAGAGATTTTAGGCAAGATTGAAAGGTACAATCGTGTGTTTGGAGGTCATTCCAGAAGTCTTATTCAGAGAGCGCAGGACCTTCCTTTTCTCCTGCGGAGGCTGCTGCGAGAACTAATTAATCCTGATAGATCTCTTCCCCTTGTTATAAGGGCTCGTGTCTGGATTTCAATGATAATGGGTGCTGCGTACCTATTCAGTCCTTTTGACTTCATCCCGGAAGCAATATTTGGTATAGCTGGTCTCCTGGACGATTTCTTCATAGTGCTCATCGTCTTCTTCCACGTTGCTGCCATTTATCGGTCTGTACTCTATCGCCGTCATGGAGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1232 zf-C3HC4 zf-C3HC4_3

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

8.99

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22510 AT1G22510 AT1G72175 AT1G72175
fragaria_vesca	FvH4_5g31590 FvH4_5g31590
malus_domestica	MD08G1217700.v1.1 MD15G1405300.v1.1
prunus_persica	Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1
pyrus_communis	pycom08g18870 pycom15g36240
rosa_chinensis	RchiOBHm_Chr7g0227111
rosa_laevigata	RLG00000001673
rosa_multiflora	Rmu_sc0001863.1_g000016
rosa_roxburghii	Rroxscaffold_3G00232340
rosa_rugosa	Rorug07G0240600
rosa_samantha	Rh7AG390300 Rh7BG375300 Rh7CG409300 Rh7DG387800
rosa_wichuraiana	Rw7G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AciI	CCGC	4 cut(s)	18, 90, 149, 319
AclWI	GGATC	2 cut(s)	123, 130
AfaI	GTAC	3 cut(s)	251, 413, 531
AfiI	CCNNNNNNNGG	2 cut(s)	17, 522
AgsI	TTSAA	3 cut(s)	198, 245, 393
AjnI	CCWGG	2 cut(s)	13, 468
AjuI	GAANNNNNNNTTGG	4 cut(s)	175, 207, 435, 467
AloI	GAACNNNNNNTCC	2 cut(s)	114, 146
AluBI	AGCT	2 cut(s)	205, 461
AluI	AGCT	2 cut(s)	205, 461
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	123, 130
AoxI	GGCC	3 cut(s)	7, 66, 212
ApeKI	GCWGC	5 cut(s)	202, 325, 328, 407, 512
AseI	ATTAAT	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	8, 301
AsuC2I	CCSGG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BanII	GRGCYC	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	178, 210
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	214, 312, 315, 394, 499
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	22, 525
BciT130I	CCWGG	2 cut(s)	15, 470
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	6 cut(s)	19, 203, 326, 329, 408, 513
BlsI	GCNGC	6 cut(s)	20, 204, 327, 330, 409, 514
Bme1390I	CCNGG	3 cut(s)	15, 440, 470
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	8, 301
BmiI	GGNNCC	2 cut(s)	180, 553
BmrFI	CCNGG	3 cut(s)	15, 440, 470
BpiI	GAAGAC	1 cut(s)	490
BpuMI	CCSGG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 522
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	15, 470
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	17, 522
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	5 cut(s)	214, 312, 315, 394, 499
BshFI	GGCC	3 cut(s)	9, 68, 214
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	215, 440
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	17, 522
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	9, 68, 214
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	379, 492
Bsp143I	GATC	4 cut(s)	22, 115, 122, 353
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	4 cut(s)	18, 90, 149, 319
BspANI	GGCC	3 cut(s)	9, 68, 214
BspLI	GGNNCC	2 cut(s)	180, 553
BspPI	GGATC	2 cut(s)	123, 130
BspTNI	GGTCTC	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	4 cut(s)	22, 115, 122, 353
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	15, 470
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	4 cut(s)	25, 118, 125, 356
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	4 cut(s)	22, 115, 122, 353
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 211, 325
BstNI	CCWGG	2 cut(s)	15, 470
BstSCI	CCNGG	3 cut(s)	13, 438, 468
BstV1I	GCAGC	5 cut(s)	214, 312, 315, 394, 499
BstV2I	GAAGAC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	9, 68, 214
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	8, 301
Csp6I	GTAC	3 cut(s)	250, 412, 530
CviAII	CATG	3 cut(s)	41, 119, 545
CviJI	RGCY	8 cut(s)	9, 68, 191, 205, 214, 325, 377, 461
CviKI_1	RGCY	8 cut(s)	9, 68, 191, 205, 214, 325, 377, 461
CviQI	GTAC	3 cut(s)	250, 412, 530
DpnI	GATC	4 cut(s)	24, 117, 124, 355
DpnII	GATC	4 cut(s)	22, 115, 122, 353
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	13, 468
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	44, 122, 548
FaiI	YATR	8 cut(s)	42, 104, 120, 154, 371, 458, 485, 546
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	3 cut(s)	40, 118, 544
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	6 cut(s)	19, 203, 326, 329, 408, 513
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	6 cut(s)	19, 203, 326, 329, 408, 513
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	6 cut(s)	19, 203, 326, 329, 408, 513
HaeIII	GGCC	3 cut(s)	9, 68, 214
HapII	CCGG	2 cut(s)	215, 440
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	44, 122, 548
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HpaII	CCGG	2 cut(s)	215, 440
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	276, 347, 385, 555
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 211, 325
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	44, 122, 548
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	4 cut(s)	22, 115, 122, 353
Lsp1109I	GCAGC	5 cut(s)	214, 312, 315, 394, 499
MaeII	ACGT	1 cut(s)	507
MalI	GATC	4 cut(s)	24, 117, 124, 355
MboI	GATC	4 cut(s)	22, 115, 122, 353
MboII	GAAGA	5 cut(s)	186, 350, 472, 490, 493
MfeI	CAATTG	1 cut(s)	70
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	379, 492
MluCI	AATT	3 cut(s)	70, 94, 339
MnlI	CCTC	5 cut(s)	21, 211, 260, 315, 542
MseI	TTAA	1 cut(s)	342
MspI	CCGG	2 cut(s)	215, 440
MspR9I	CCNGG	3 cut(s)	15, 440, 470
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	15, 470
MwoI	GCNNNNNNNGC	3 cut(s)	15, 211, 325
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	4 cut(s)	22, 115, 122, 353
NlaIII	CATG	3 cut(s)	44, 122, 548
NlaIV	GGNNCC	2 cut(s)	180, 553
PfoI	TCCNGGA	2 cut(s)	438, 468
PkrI	GCNGC	6 cut(s)	20, 204, 327, 330, 409, 514
PpuMI	RGGWCCY	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	13, 468
PspGI	CCWGG	2 cut(s)	13, 468
PspN4I	GGNNCC	2 cut(s)	180, 553
PspPI	GGNCC	2 cut(s)	8, 301
PspPPI	RGGWCCY	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	3 cut(s)	251, 413, 531
RsaNI	GTAC	3 cut(s)	250, 412, 530
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	6 cut(s)	19, 203, 326, 329, 408, 513
Sau3AI	GATC	4 cut(s)	22, 115, 122, 353
Sau96I	GGNCC	2 cut(s)	8, 301
ScrFI	CCNGG	3 cut(s)	15, 440, 470
SduI	GDGCHC	2 cut(s)	379, 492
SetI	ASST	9 cut(s)	207, 222, 251, 271, 306, 417, 463, 510, 553
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	3 cut(s)	70, 94, 339
SsiI	CCGC	4 cut(s)	18, 90, 149, 319
SspI	AATATT	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	13, 438, 468
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	51
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	70, 94, 339
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	86
TseI	GCWGC	5 cut(s)	202, 325, 328, 407, 512
TspDTI	ATGAA	2 cut(s)	424, 472
TspRI	CASTG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.