Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007874

Physical Location & Seq

Genomic Coordinates Reverse (-)

52547723 .. 52554656

Gene Structure 6934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAAAGGAAAAAGAGAGAAATAGTGAGAAGTAGTTGCGGACTTGCGGGATTTGAAATCGAAAAGGGAGCGACGACGGGAATGGAGGCTCCTCCTGAAAACGATCTGTGCTCCGTCTGCCATGGCGCCTTCAACACTCCTTGTCAAGCCAATTGCTCTCACTGGTTTTGCGGAAATTGTATTATGCTTGTTTGGGATCATGGATCAGCACTTCAGCCTTGTAAATGCCCTCTCTGTCGTCGCCAGATAACCTTGCTGGTTCCAACTGAGGCTTCATTGAGCCAACGTGATATGCCTGAGGTGGCTGAGATTCTAGGCAGGGTTGAAACATATAATCGCTATTTTGGAGGTCAACCCAGAGGTCTTACTCAGAGAATGCAAGACCTTCCTTTTCTTTTGCGGAGGCTGTTACGAGAACTATTGGATCCCCATAGATCGCTTCCCCTTGTTATAAGGGCTCGTGTCATTATTGCAGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1232 zf-C3HC4 zf-C3HC4_3

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

8.91

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22510 AT1G22510 AT1G72175 AT1G72175
fragaria_vesca	FvH4_5g31590 FvH4_5g31590
malus_domestica	MD08G1217700.v1.1 MD15G1405300.v1.1
prunus_persica	Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1
pyrus_communis	pycom08g18870 pycom15g36240
rosa_chinensis	RchiOBHm_Chr7g0227111
rosa_laevigata	RLG00000001673
rosa_multiflora	Rmu_sc0001863.1_g000016
rosa_roxburghii	Rroxscaffold_3G00232340
rosa_rugosa	Rorug07G0240600
rosa_samantha	Rh7AG390300 Rh7BG375300 Rh7CG409300 Rh7DG387800
rosa_wichuraiana	Rw7G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	4 cut(s)	39, 47, 171, 400
AclWI	GGATC	4 cut(s)	204, 211, 419, 432
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	56, 133, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
Alw21I	GWGCWC	1 cut(s)	113
AlwI	GGATC	4 cut(s)	204, 211, 419, 432
AspLEI	GCGC	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	90, 127, 261, 426
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	121
BseMII	CTCAG	4 cut(s)	258, 288, 297, 383
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	113, 460
Bsp143I	GATC	5 cut(s)	103, 196, 203, 424, 434
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	39, 47, 171, 400
BspCNI	CTCAG	4 cut(s)	259, 289, 298, 382
BspLI	GGNNCC	4 cut(s)	90, 127, 261, 426
BspPI	GGATC	4 cut(s)	204, 211, 419, 432
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	103, 196, 203, 424, 434
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	267, 297, 306, 369
BstDSI	CCRYGG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	5 cut(s)	106, 199, 206, 427, 437
BstMBI	GATC	5 cut(s)	103, 196, 203, 424, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	122, 200
CviJI	RGCY	8 cut(s)	89, 149, 217, 272, 282, 305, 406, 458
CviKI_1	RGCY	8 cut(s)	89, 149, 217, 272, 282, 305, 406, 458
DdeI	CTNAG	4 cut(s)	267, 297, 306, 369
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	5 cut(s)	105, 198, 205, 426, 436
DpnII	GATC	5 cut(s)	103, 196, 203, 424, 434
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	460
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	125, 203
FaiI	YATR	8 cut(s)	123, 185, 201, 293, 331, 333, 432, 452
FatI	CATG	2 cut(s)	121, 199
FauI	CCCGC	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	129
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	125, 203
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	3 cut(s)	76, 79, 243
HpyAV	CCTTC	2 cut(s)	139, 395
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	4, 379, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	4 cut(s)	267, 297, 306, 369
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	125, 203
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	103, 196, 203, 424, 434
LmnI	GCTCC	3 cut(s)	68, 94, 116
LpnPI	CCDG	7 cut(s)	108, 148, 242, 257, 304, 309, 370
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	5 cut(s)	105, 198, 205, 426, 436
MboI	GATC	5 cut(s)	103, 196, 203, 424, 434
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	113, 460
MluCI	AATT	2 cut(s)	151, 175
Mly113I	GGCGCC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	8 cut(s)	79, 102, 240, 262, 292, 341, 353, 396
MseI	TTAA	1 cut(s)	477
MunI	CAATTG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	117
NarI	GGCGCC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	5 cut(s)	103, 196, 203, 424, 434
NlaIII	CATG	2 cut(s)	125, 203
NlaIV	GGNNCC	4 cut(s)	90, 127, 261, 426
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	452
PspN4I	GGNNCC	4 cut(s)	90, 127, 261, 426
PsuI	RGATCY	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	103, 196, 203, 424, 434
SduI	GDGCHC	2 cut(s)	113, 460
SetI	ASST	6 cut(s)	254, 289, 303, 352, 364, 387
SfoI	GGCGCC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	151, 175
SsiI	CCGC	4 cut(s)	39, 47, 171, 400
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	151, 175
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	167
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.