Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007874

Physical Location & Seq

Genomic Coordinates Reverse (-)

51126358 .. 51133377

Gene Structure 7020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAAAGGAAAAAGAGAGAAATAGTGAGAAGTAGTTGCGGACTTGCGGGATTTGAAATCGAAAAGGGAGCGACGACGGGAATGGAGGCTCCTCCTGAAAACGATCTGTGCTCCGTCTGCCATGGCGCCTTCAACACTCCTTGTCAAGCCAATTGCTCTCACTGGTTTTGCGGAAATTGTATTATGCTTGTTTGGGATCATGGATCAGCACTTCAGCCTTGTAAATGCCCTCTCTGTCGTCGCCAGATAACCTTGCTGGTTCCAACTGAGGCTTCATTGAGCCAACGTGATATGCCTGAGGTGGCTGAGATTCTAGGCAGGGTTGAAACATATAATCGCTATTTTGGAGGTCAACCCAGAGGTCTTACTCAGAGAATGCAAGACCTTCCTTTTCTTTTGCGGAGGCTGTTACGAGAACTATTGGATCCCCATAGATCGCTTCCCCTTGTTATAAGGGCTCGTGTCATTATTGCAGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1232 zf-C3HC4 zf-C3HC4_3

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

8.91

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22510 AT1G22510 AT1G72175 AT1G72175
fragaria_vesca	FvH4_5g31590 FvH4_5g31590
malus_domestica	MD08G1217700.v1.1 MD15G1405300.v1.1
prunus_persica	Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1
pyrus_communis	pycom08g18870 pycom15g36240
rosa_chinensis	RchiOBHm_Chr7g0227111
rosa_laevigata	RLG00000001673
rosa_multiflora	Rmu_sc0001863.1_g000016
rosa_roxburghii	Rroxscaffold_3G00232340
rosa_rugosa	Rorug07G0240600
rosa_samantha	Rh7AG390300 Rh7BG375300 Rh7CG409300 Rh7DG387800
rosa_wichuraiana	Rw7G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	4 cut(s)	39, 47, 171, 400
AclWI	GGATC	4 cut(s)	204, 211, 419, 432
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	3 cut(s)	56, 133, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
Alw21I	GWGCWC	1 cut(s)	113
AlwI	GGATC	4 cut(s)	204, 211, 419, 432
AspLEI	GCGC	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	90, 127, 261, 426
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	121
BseMII	CTCAG	4 cut(s)	258, 288, 297, 383
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	113, 460
Bsp143I	GATC	5 cut(s)	103, 196, 203, 424, 434
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	39, 47, 171, 400
BspCNI	CTCAG	4 cut(s)	259, 289, 298, 382
BspLI	GGNNCC	4 cut(s)	90, 127, 261, 426
BspPI	GGATC	4 cut(s)	204, 211, 419, 432
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	103, 196, 203, 424, 434
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	267, 297, 306, 369
BstDSI	CCRYGG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	5 cut(s)	106, 199, 206, 427, 437
BstMBI	GATC	5 cut(s)	103, 196, 203, 424, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	122, 200
CviJI	RGCY	8 cut(s)	89, 149, 217, 272, 282, 305, 406, 458
CviKI_1	RGCY	8 cut(s)	89, 149, 217, 272, 282, 305, 406, 458
DdeI	CTNAG	4 cut(s)	267, 297, 306, 369
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	5 cut(s)	105, 198, 205, 426, 436
DpnII	GATC	5 cut(s)	103, 196, 203, 424, 434
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	460
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	125, 203
FaiI	YATR	8 cut(s)	123, 185, 201, 293, 331, 333, 432, 452
FatI	CATG	2 cut(s)	121, 199
FauI	CCCGC	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	129
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	125, 203
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	3 cut(s)	76, 79, 243
HpyAV	CCTTC	2 cut(s)	139, 395
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	4, 379, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	4 cut(s)	267, 297, 306, 369
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	125, 203
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	5 cut(s)	103, 196, 203, 424, 434
LmnI	GCTCC	3 cut(s)	68, 94, 116
LpnPI	CCDG	7 cut(s)	108, 148, 242, 257, 304, 309, 370
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	5 cut(s)	105, 198, 205, 426, 436
MboI	GATC	5 cut(s)	103, 196, 203, 424, 434
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	113, 460
MluCI	AATT	2 cut(s)	151, 175
Mly113I	GGCGCC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	8 cut(s)	79, 102, 240, 262, 292, 341, 353, 396
MseI	TTAA	1 cut(s)	477
MunI	CAATTG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	117
NarI	GGCGCC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	5 cut(s)	103, 196, 203, 424, 434
NlaIII	CATG	2 cut(s)	125, 203
NlaIV	GGNNCC	4 cut(s)	90, 127, 261, 426
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	310
PluTI	GGCGCC	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	452
PspN4I	GGNNCC	4 cut(s)	90, 127, 261, 426
PsuI	RGATCY	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	103, 196, 203, 424, 434
SduI	GDGCHC	2 cut(s)	113, 460
SetI	ASST	6 cut(s)	254, 289, 303, 352, 364, 387
SfoI	GGCGCC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	151, 175
SsiI	CCGC	4 cut(s)	39, 47, 171, 400
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	151, 175
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	167
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.