Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007874

Physical Location & Seq

Genomic Coordinates Reverse (-)

22134033 .. 22134865

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTTCTCTCTGTCCGTTTGTTTCTGTCCGTTTTCTTTCCCTCTACCGTCTTGGGTAGTTTTGCTCGGAGCTTGTCTCCGTTTCTGGCCCTGTGGGTTCCTCTTGTTCCCATTTTTCCTTTTTCCAGTTGTTTCTTTCTTCATCCTCTTCCCCTAGTAGTTCTTTCTTCTGCCATGATCGTTTACTTTGCTCCTCGGAACTTTTTAAGTGGGGTTTACTCACTATTGCACTGGGTGATGCTACAAGAGGCTGTGTACCTTTCGGTGCCTGTTTCTTTGGTCCCTTACCGGATCTCACCTAATCCTTTCATCCGGTTTATACCGGTTGTTGTTGTTCTGGCTACTTTGTTCTTGGCAGACTTGGTTCGCTGTGGTGAAGGTGATGTTTGCAAATACCTCTGGAAATCTGATGGTTGGGACATTGAATTCGATATGGGTCTTTCCTCTGCGCTTTCGATTTGGTCGGATTTGGTGGGTCGGCTACTTTGTGGTGGTGCGGCGGTCTCATCCTTCTTGTCGGCGGTTGCAGTTCGTTCTGGTTCTGTTGTTGTTTTGCTTTGTTGTTTGCTTGGGGCTTTTCGGTCCTTGTTGTTGGTTTTGGGTCTCTCTGTAATAGCTTATTTTATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1232 zf-C3HC4 zf-C3HC4_3

Protein Analysis

210

Amino Acids

23.06

Weight (kDa)

8.59

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22510 AT1G22510 AT1G72175 AT1G72175
fragaria_vesca	FvH4_5g31590 FvH4_5g31590
malus_domestica	MD08G1217700.v1.1 MD15G1405300.v1.1
prunus_persica	Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1
pyrus_communis	pycom08g18870 pycom15g36240
rosa_chinensis	RchiOBHm_Chr7g0227111
rosa_laevigata	RLG00000001673
rosa_multiflora	Rmu_sc0001863.1_g000016
rosa_roxburghii	Rroxscaffold_3G00232340
rosa_rugosa	Rorug07G0240600
rosa_samantha	Rh7AG390300 Rh7BG375300 Rh7CG409300 Rh7DG387800
rosa_wichuraiana	Rw7G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	3 cut(s)	497, 500, 521
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	425
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	425
AluBI	AGCT	2 cut(s)	72, 617
AluI	AGCT	2 cut(s)	72, 617
Alw26I	GTCTC	3 cut(s)	81, 508, 608
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AsiGI	ACCGGT	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	88, 280, 582
AsuHPI	GGTGA	4 cut(s)	247, 288, 386, 392
AvaII	GGWCC	2 cut(s)	280, 582
BanI	GGYRCC	1 cut(s)	265
BccI	CCATC	1 cut(s)	404
BcoDI	GTCTC	3 cut(s)	81, 508, 608
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme18I	GGWCC	2 cut(s)	280, 582
BmgT120I	GGNCC	3 cut(s)	88, 280, 582
BmiI	GGNNCC	3 cut(s)	99, 267, 282
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BsaI	GGTCTC	2 cut(s)	508, 608
BsaJI	CCNNGG	1 cut(s)	194
BsaWI	WCCGGW	3 cut(s)	288, 312, 322
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	126, 236
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	3 cut(s)	142, 309, 506
BseNI	ACTGG	2 cut(s)	126, 236
BseRI	GAGGAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	289, 313, 323
BslFI	GGGAC	2 cut(s)	266, 431
BsmAI	GTCTC	3 cut(s)	81, 508, 608
BsmFI	GGGAC	2 cut(s)	266, 431
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	2 cut(s)	508, 608
Bsp143I	GATC	2 cut(s)	177, 291
BspACI	CCGC	3 cut(s)	497, 500, 521
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	99, 267, 282
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	2 cut(s)	508, 608
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	126, 236
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	2 cut(s)	177, 291
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	142, 309, 506
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	180, 294
BstMAI	GTCTC	3 cut(s)	81, 508, 608
BstMBI	GATC	2 cut(s)	177, 291
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	142, 309, 506
BtsIMutI	CAGTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	88, 280, 582
Csp6I	GTAC	1 cut(s)	256
CspAI	ACCGGT	1 cut(s)	322
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	7 cut(s)	72, 89, 251, 341, 481, 575, 617
CviKI_1	RGCY	7 cut(s)	72, 89, 251, 341, 481, 575, 617
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	2 cut(s)	179, 293
DpnII	GATC	2 cut(s)	177, 291
DraIII	CACNNNGTG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	508, 608
Eco47I	GGWCC	2 cut(s)	280, 582
EcoRI	GAATTC	1 cut(s)	425
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	176, 320, 434
FaqI	GGGAC	2 cut(s)	266, 431
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	3 cut(s)	129, 296, 493
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	3 cut(s)	289, 313, 323
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HpaII	CCGG	3 cut(s)	289, 313, 323
HphI	GGTGA	4 cut(s)	247, 288, 386, 392
Hpy166II	GTNNAC	3 cut(s)	184, 217, 256
Hpy188I	TCNGA	4 cut(s)	69, 198, 409, 466
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	3 cut(s)	184, 217, 256
HpyAV	CCTTC	2 cut(s)	371, 520
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	229, 390, 527
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	177, 291
LmnI	GCTCC	2 cut(s)	69, 196
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	155
MalI	GATC	2 cut(s)	179, 293
MboI	GATC	2 cut(s)	177, 291
MboII	GAAGA	3 cut(s)	131, 140, 159
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	7 cut(s)	52, 111, 156, 204, 241, 407, 454
MseI	TTAA	2 cut(s)	206, 627
MspI	CCGG	3 cut(s)	289, 313, 323
NdeII	GATC	2 cut(s)	177, 291
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	99, 267, 282
PinAI	ACCGGT	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	99, 267, 282
PspPI	GGNCC	3 cut(s)	88, 280, 582
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	206, 627
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	2 cut(s)	177, 291
Sau96I	GGNCC	3 cut(s)	88, 280, 582
SetI	ASST	6 cut(s)	74, 261, 301, 382, 399, 619
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	2 cut(s)	280, 582
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	3 cut(s)	497, 500, 521
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	429, 455
TaqII	GACCGA	1 cut(s)	570
TasI	AATT	1 cut(s)	425
TauI	GCSGC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	206, 627
Tru9I	TTAA	2 cut(s)	206, 627
TscAI	CASTG	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	131, 298
TspGWI	ACGGA	3 cut(s)	5, 19, 69
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	280, 582
XapI	RAATTY	1 cut(s)	425
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.