Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007874

Physical Location & Seq

Genomic Coordinates Reverse (-)

18989664 .. 18995820

Gene Structure 6157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001673

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGGCTCCTCCTGAAAACGATCTGTGCTCCGTCTGCCATGGCGTCTTCAACACTCCTTGTCAAGCCAATTGCTCTCACTGGTTTTGCGGAAATTGTATTATGCTTGTTTGGCATCATGGATCAGCACTTCAGCCTTGTAAATGCCCTCTGTGTCGTCGCCAGATAACCTTGCTGGTTCCAACTGAGGCTTCATTGAGCCAACGTGATATGCCTGAGGTGGCTGAGATTCTAGACAAGGTTGAAACATACAATCGCTATTTTGGAGGTCAATCCAGAGGTCTTATTCAGAGAATGCAAGACCTTCCTTTTCTTTTGCGGAGGCTGTTACGAGAACTATTGGATCCCCATAGATCGCTTCCCCTTGTTATAAGGGCTCGTGTCATTATTGCAATGATACTAAGTGGTGCCTATGTACTCAGTCCTGTTGACTTTATTCCTGAAGGTGTGTGTATGATCTTTACTTTCATTTGGTTATATATTTATTATCCCGGAGTTGTTGTCAGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1232 zf-C3HC4 zf-C3HC4_3

Protein Analysis

171

Amino Acids

19.36

Weight (kDa)

6.92

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22510 AT1G22510 AT1G72175 AT1G72175
fragaria_vesca	FvH4_5g31590 FvH4_5g31590
malus_domestica	MD08G1217700.v1.1 MD15G1405300.v1.1
prunus_persica	Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1 Prupe.1G555800_v2.0.a1
pyrus_communis	pycom08g18870 pycom15g36240
rosa_chinensis	RchiOBHm_Chr7g0227111
rosa_laevigata	RLG00000001673
rosa_multiflora	Rmu_sc0001863.1_g000016
rosa_roxburghii	Rroxscaffold_3G00232340
rosa_rugosa	Rorug07G0240600
rosa_samantha	Rh7AG390300 Rh7BG375300 Rh7CG409300 Rh7DG387800
rosa_wichuraiana	Rw7G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	2 cut(s)	90, 319
AclWI	GGATC	3 cut(s)	130, 338, 351
AcuI	CTGAAG	2 cut(s)	116, 462
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	417, 508
AgsI	TTSAA	2 cut(s)	52, 245
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	130, 338, 351
AsuC2I	CCSGG	1 cut(s)	492
AxyI	CCTNAGG	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	4 cut(s)	9, 180, 345, 409
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	86
Bse21I	CCTNAGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	4 cut(s)	177, 207, 216, 433
BseNI	ACTGG	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	32, 379
Bsp143I	GATC	5 cut(s)	22, 122, 343, 353, 456
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	2 cut(s)	90, 319
BspCNI	CTCAG	4 cut(s)	178, 208, 217, 432
BspLI	GGNNCC	4 cut(s)	9, 180, 345, 409
BspPI	GGATC	3 cut(s)	130, 338, 351
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	5 cut(s)	22, 122, 343, 353, 456
BssNI	GRCGYC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	510
BstDEI	CTNAG	5 cut(s)	186, 216, 225, 401, 419
BstDSI	CCRYGG	1 cut(s)	40
BstKTI	GATC	5 cut(s)	25, 125, 346, 356, 459
BstMBI	GATC	5 cut(s)	22, 122, 343, 353, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 112
BstSCI	CCNGG	1 cut(s)	490
BstSNI	TACGTA	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	79
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	416, 507
CviAII	CATG	2 cut(s)	41, 119
CviJI	RGCY	8 cut(s)	8, 68, 136, 191, 201, 224, 325, 377
CviKI_1	RGCY	8 cut(s)	8, 68, 136, 191, 201, 224, 325, 377
CviQI	GTAC	2 cut(s)	416, 507
DdeI	CTNAG	5 cut(s)	186, 216, 225, 401, 419
DpnI	GATC	5 cut(s)	24, 124, 345, 355, 458
DpnII	GATC	5 cut(s)	22, 122, 343, 353, 456
Eco105I	TACGTA	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	116, 462
Eco81I	CCTNAGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	44, 122
FatI	CATG	2 cut(s)	40, 118
FriOI	GRGCYC	1 cut(s)	379
FspBI	CTAG	1 cut(s)	233
HapII	CCGG	1 cut(s)	492
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	44, 122
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	492
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	14, 233, 276, 440
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	314, 437
HpyCH4IV	ACGT	2 cut(s)	205, 509
HpyCH4V	TGCA	2 cut(s)	298, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 112
HpyF3I	CTNAG	5 cut(s)	186, 216, 225, 401, 419
HpySE526I	ACGT	2 cut(s)	205, 509
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	44, 122
Kzo9I	GATC	5 cut(s)	22, 122, 343, 353, 456
LmnI	GCTCC	2 cut(s)	13, 35
LpnPI	CCDG	9 cut(s)	27, 67, 161, 176, 228, 289, 438, 453, 505
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	2 cut(s)	205, 509
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	5 cut(s)	24, 124, 345, 355, 458
MboI	GATC	5 cut(s)	22, 122, 343, 353, 456
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	70
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	32, 379
MluCI	AATT	2 cut(s)	70, 94
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	21, 159, 181, 211, 260, 272, 315
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	36, 112
NciI	CCSGG	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	5 cut(s)	22, 122, 343, 353, 456
NlaIII	CATG	2 cut(s)	44, 122
NlaIV	GGNNCC	4 cut(s)	9, 180, 345, 409
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	371
PspN4I	GGNNCC	4 cut(s)	9, 180, 345, 409
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	417, 508
RsaNI	GTAC	2 cut(s)	416, 507
Sau3AI	GATC	5 cut(s)	22, 122, 343, 353, 456
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	32, 379
SetI	ASST	9 cut(s)	173, 208, 222, 243, 271, 283, 306, 448, 512
SfaNI	GCATC	1 cut(s)	124
SnaBI	TACGTA	1 cut(s)	510
Sse9I	AATT	2 cut(s)	70, 94
SsiI	CCGC	2 cut(s)	90, 319
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	40
TaiI	ACGT	2 cut(s)	208, 512
TasI	AATT	2 cut(s)	70, 94
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	183, 457
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	86
XbaI	TCTAGA	1 cut(s)	232
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.