Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013874

Physical Location & Seq

Genomic Coordinates Reverse (-)

27184245 .. 27185883

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCGAGGAAGAAGCATCGAAAGCTCTTCCCTACCTTAGCATCAGAGACAAACAAAACGTTAGACTGCTCGAACGGAGTCTGCGACCCGATTTGCCCTTACAATTGCTATCCAGAACCCGATTACTACACCATATCACCACAGCTACCTCCATGGTCATCGTCACCACAACCATCTCCATGTCCATCTCCATCTATCTCAGCCGTTTATCTACCATCTCAAGACTCTTCATCTTCCTTAGACGCCATATCCATCATCACCATAACCGGTGCGGTCTTAGCCATCCTTTTAACCGGATTCTTTCTTGTAGCGAAATTCTTTTCAGACAGCGTAAACCGTGTCAACCAAGGAACATATCAATCCGATAACGAAGACAACGACACGGTAATGGAGGAAGAGTTTCAAGATAGGGAACAAGTGGATCACCCAATATGGTTAATAAGAACAACAGGTCTACAACAATCGATCATTAACTCGATTACAATCTGTAATTACAAGAGAGGAGATGGTTTAATCGAGAGAACAGATTGTCCAGTTTGTTTAAACGAGTTTGAAGAAGATGAGAGTCTTAGGTTATTGCCTAAATGTAACCACGCTTTTCACATCTCTTGTATTGATACTTGGCTTAGTTCTCACACCAATTGTCCTCTGTGTCGTGCTGGTATTGCGATGATTAGTGTCACCACTCCACGGTATTCTGGTCCGGTTGAAGTAACTCCCGGAGGATCAGGTTCACATTTGGAGAACGATGGAGTTGATGAAGAAGATCATGGAGAGATTGAAAACAGAGTTGATTCTGATTTTAAAGAGAGTGATGATTCAGACATAAGAATTGAGATTTATAGATTTGATTCAGACGGTGATGGATCTGAAACAGAGACGAAAGAGAGAGTTAGGGTTTTGAAGGAGTGTATGGATCCAAATGGAGGAGATTCAGTAAACTCTCTCTCGCATACGAAAACCCATGTAGAAAGTGTAGATTTTCCGGGGAAATCATGCGAGAATCAGAGTGAGGAATTCACTAGACATAACGGAGAAGATGAAGCAAGCTGCTCTGAGGAAAACGGTGGTGGCAGCAACCAATTACGGAGAAGTTGTGATTCTGGTGAATTGAACGGCGAAACAACCGGAGATGAAGGGAAAAGTCAGTCAGACATTTCGTCGAGTACGTTGAAGACAAATGGAAGCTCCTCCTCTGTTTCATGTTTCAACAAAAACAAGAGTTCGGTTTTTCCGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002238 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051865 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

413

Amino Acids

45.35

Weight (kDa)

4.53

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	176 - 219	3e-14	Ring finger domain
zf-rbx1	PF12678	176 - 219	3.3e-09	RING-H2 zinc finger domain
zf-RING_11	PF17123	176 - 205	1e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	177 - 218	5.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	177 - 218	8e-08	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	177 - 221	2.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72220
fragaria_vesca	FvH4_5g36252
malus_domestica	MD08G1190400.v1.1 MD15G1377700.v1.1
prunus_persica	Prupe.1G524400_v2.0.a1
pyrus_communis	pycom08g16360 pycom15g33840
rosa_chinensis	RchiOBHm_Chr7g0238151
rosa_laevigata	RLG00000000938
rosa_multiflora	Rmu_sc0008459.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223320
rosa_rugosa	Rorug07G0310600
rosa_samantha	Rh7AG466300 Rh7BG436800 Rh7CG484100 Rh7DG452500
rosa_wichuraiana	Rw7G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	454
AciI	CCGC	2 cut(s)	272, 1235
AclI	AACGTT	1 cut(s)	59
AclWI	GGATC	5 cut(s)	429, 733, 874, 911, 924
AcsI	RAATTY	2 cut(s)	314, 1016
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	1168
AfiI	CCNNNNNNNGG	2 cut(s)	690, 926
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	8 cut(s)	404, 554, 710, 782, 904, 1114, 1174, 1210
AhdI	GACNNNNNGTC	1 cut(s)	1159
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	4 cut(s)	25, 145, 1050, 1188
AluI	AGCT	4 cut(s)	25, 145, 1050, 1188
Alw26I	GTCTC	2 cut(s)	41, 872
AlwI	GGATC	5 cut(s)	429, 733, 874, 911, 924
ApeKI	GCWGC	2 cut(s)	1050, 1074
ApoI	RAATTY	2 cut(s)	314, 1016
AsiGI	ACCGGT	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	2 cut(s)	720, 987
AsuHPI	GGTGA	7 cut(s)	129, 156, 250, 416, 673, 872, 1118
AvaII	GGWCC	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	916
BbsI	GAAGAC	2 cut(s)	378, 1181
BbvI	GCAGC	2 cut(s)	1037, 1086
BccI	CCATC	9 cut(s)	181, 193, 199, 223, 260, 290, 500, 743, 857
BceAI	ACGGC	2 cut(s)	188, 1132
BcnI	CCSGG	2 cut(s)	720, 987
BcoDI	GTCTC	2 cut(s)	41, 872
BfaI	CTAG	1 cut(s)	1023
BfmI	CTRYAG	1 cut(s)	1238
BisI	GCNGC	2 cut(s)	1051, 1075
BlsI	GCNGC	2 cut(s)	1052, 1076
Bme1390I	CCNGG	2 cut(s)	720, 987
Bme18I	GGWCC	1 cut(s)	701
BmeRI	GACNNNNNGTC	1 cut(s)	1159
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	918
BmrFI	CCNGG	2 cut(s)	720, 987
BmsI	GCATC	2 cut(s)	25, 50
BpiI	GAAGAC	2 cut(s)	378, 1181
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	720, 987
Bsa29I	ATCGAT	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	4 cut(s)	152, 346, 689, 986
BsaWI	WCCGGW	4 cut(s)	266, 293, 703, 1127
BsaXI	ACNNNNNCTCC	6 cut(s)	383, 413, 921, 951, 1081, 1111
Bsc4I	CCNNNNNNNGG	2 cut(s)	690, 926
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	464
BseDI	CCNNGG	4 cut(s)	152, 346, 689, 986
BseGI	GGATG	1 cut(s)	282
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	690, 926
BseMII	CTCAG	2 cut(s)	213, 1047
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	4 cut(s)	516, 942, 1180, 1183
BseXI	GCAGC	2 cut(s)	1037, 1086
BshTI	ACCGGT	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	464
BsiSI	CCGG	6 cut(s)	267, 294, 704, 720, 986, 1128
BslI	CCNNNNNNNGG	2 cut(s)	690, 926
BsmAI	GTCTC	2 cut(s)	41, 872
BsmBI	CGTCTC	1 cut(s)	872
Bsp143I	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	2 cut(s)	272, 1235
BspCNI	CTCAG	2 cut(s)	212, 1048
BspDI	ATCGAT	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	918
BspPI	GGATC	5 cut(s)	429, 733, 874, 911, 924
BspQI	GCTCTTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	152, 346, 689, 986
BssMI	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	152, 346
Bst4CI	ACNGT	5 cut(s)	338, 385, 693, 860, 1067
Bst6I	CTCTTC	3 cut(s)	32, 232, 390
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	1048
BstDEI	CTNAG	7 cut(s)	37, 199, 238, 277, 569, 626, 1056
BstDSI	CCRYGG	2 cut(s)	152, 689
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	6 cut(s)	424, 468, 728, 769, 869, 919
BstMAI	GTCTC	2 cut(s)	41, 872
BstMBI	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 278, 665
BstSCI	CCNGG	2 cut(s)	718, 985
BstSFI	CTRYAG	1 cut(s)	1238
BstV1I	GCAGC	2 cut(s)	1037, 1086
BstV2I	GAAGAC	2 cut(s)	378, 1181
BstX2I	RGATCY	2 cut(s)	866, 916
BstYI	RGATCY	2 cut(s)	866, 916
Bsu15I	ATCGAT	1 cut(s)	464
BsuTUI	ATCGAT	1 cut(s)	464
BtgI	CCRYGG	2 cut(s)	152, 689
BtgZI	GCGATG	1 cut(s)	683
BtsCI	GGATG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	1048
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	701
ClaI	ATCGAT	1 cut(s)	464
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	1167
CspAI	ACCGGT	1 cut(s)	266
CviAII	CATG	6 cut(s)	153, 180, 770, 965, 996, 1203
CviJI	RGCY	7 cut(s)	25, 145, 203, 281, 625, 1050, 1188
CviKI_1	RGCY	7 cut(s)	25, 145, 203, 281, 625, 1050, 1188
CviQI	GTAC	1 cut(s)	1167
DdeI	CTNAG	7 cut(s)	37, 199, 238, 277, 569, 626, 1056
DpnI	GATC	6 cut(s)	423, 467, 727, 768, 868, 918
DpnII	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
DraI	TTTAAA	2 cut(s)	543, 805
DriI	GACNNNNNGTC	1 cut(s)	1159
Eam1104I	CTCTTC	3 cut(s)	32, 232, 390
Eam1105I	GACNNNNNGTC	1 cut(s)	1159
EarI	CTCTTC	3 cut(s)	32, 232, 390
Eco130I	CCWWGG	2 cut(s)	152, 346
Eco47I	GGWCC	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	1016
EcoT14I	CCWWGG	2 cut(s)	152, 346
ErhI	CCWWGG	2 cut(s)	152, 346
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	6 cut(s)	156, 183, 773, 968, 999, 1206
FatI	CATG	6 cut(s)	152, 179, 769, 964, 995, 1202
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	1051, 1075
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	1051, 1075
FspBI	CTAG	1 cut(s)	1023
GluI	GCNGC	2 cut(s)	1051, 1075
HapII	CCGG	6 cut(s)	267, 294, 704, 720, 986, 1128
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	156, 183, 773, 968, 999, 1206
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaII	CCGG	6 cut(s)	267, 294, 704, 720, 986, 1128
HphI	GGTGA	7 cut(s)	129, 156, 250, 416, 673, 872, 1118
Hpy166II	GTNNAC	5 cut(s)	334, 343, 455, 734, 940
Hpy188III	TCNNGA	4 cut(s)	113, 221, 404, 517
Hpy8I	GTNNAC	5 cut(s)	334, 343, 455, 734, 940
Hpy99I	CGWCG	1 cut(s)	1165
HpyAV	CCTTC	2 cut(s)	898, 1130
HpyCH4III	ACNGT	5 cut(s)	338, 385, 693, 860, 1067
HpyCH4IV	ACGT	2 cut(s)	59, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 278, 665
HpyF3I	CTNAG	7 cut(s)	37, 199, 238, 277, 569, 626, 1056
HpySE526I	ACGT	2 cut(s)	59, 1169
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	6 cut(s)	156, 183, 773, 968, 999, 1206
Kzo9I	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	1193
Lsp1109I	GCAGC	2 cut(s)	1037, 1086
LweI	GCATC	2 cut(s)	25, 50
MaeI	CTAG	1 cut(s)	1023
MaeII	ACGT	2 cut(s)	59, 1169
MaeIII	GTNAC	4 cut(s)	162, 587, 679, 712
MalI	GATC	6 cut(s)	423, 467, 727, 768, 868, 918
MboI	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
MfeI	CAATTG	2 cut(s)	103, 640
MflI	RGATCY	2 cut(s)	866, 916
MluCI	AATT	8 cut(s)	103, 314, 490, 640, 831, 1016, 1082, 1109
MlyI	GAGTC	3 cut(s)	87, 218, 574
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	6 cut(s)	290, 437, 471, 512, 542, 804
MslI	CAYNNNNRTG	2 cut(s)	178, 386
MspA1I	CMGCKG	1 cut(s)	1237
MspI	CCGG	6 cut(s)	267, 294, 704, 720, 986, 1128
MspR9I	CCNGG	2 cut(s)	720, 987
MssI	GTTTAAAC	1 cut(s)	543
MunI	CAATTG	2 cut(s)	103, 640
MwoI	GCNNNNNNNGC	3 cut(s)	22, 278, 665
NciI	CCSGG	2 cut(s)	720, 987
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
NlaIII	CATG	6 cut(s)	156, 183, 773, 968, 999, 1206
NlaIV	GGNNCC	1 cut(s)	918
NmuCI	GTSAC	2 cut(s)	162, 679
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 375, 1166
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	7 cut(s)	297, 794, 818, 851, 932, 1003, 1100
PfoI	TCCNGGA	1 cut(s)	718
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	1052, 1076
PleI	GAGTC	3 cut(s)	86, 218, 573
PmeI	GTTTAAAC	1 cut(s)	543
PpsI	GAGTC	3 cut(s)	86, 218, 573
Psp1406I	AACGTT	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	918
PspPI	GGNCC	1 cut(s)	701
PsuI	RGATCY	2 cut(s)	866, 916
RsaI	GTAC	1 cut(s)	1168
RsaNI	GTAC	1 cut(s)	1167
RseI	CAYNNNNRTG	2 cut(s)	178, 386
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	6 cut(s)	290, 437, 471, 512, 542, 804
SatI	GCNGC	2 cut(s)	1051, 1075
Sau3AI	GATC	6 cut(s)	421, 465, 725, 766, 866, 916
Sau96I	GGNCC	1 cut(s)	701
SchI	GAGTC	3 cut(s)	87, 218, 574
ScrFI	CCNGG	2 cut(s)	720, 987
SfaNI	GCATC	2 cut(s)	25, 50
SfcI	CTRYAG	1 cut(s)	1238
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	2 cut(s)	178, 386
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	8 cut(s)	103, 314, 490, 640, 831, 1016, 1082, 1109
SsiI	CCGC	2 cut(s)	272, 1235
SspMI	CTAG	1 cut(s)	1023
StyD4I	CCNGG	2 cut(s)	718, 985
StyI	CCWWGG	2 cut(s)	152, 346
TaaI	ACNGT	5 cut(s)	338, 385, 693, 860, 1067
TaiI	ACGT	2 cut(s)	62, 1172
TaqI	TCGA	6 cut(s)	19, 71, 464, 476, 516, 1163
TasI	AATT	8 cut(s)	103, 314, 490, 640, 831, 1016, 1082, 1109
TfiI	GAWTC	7 cut(s)	297, 794, 818, 851, 932, 1003, 1100
Tru1I	TTAA	6 cut(s)	290, 437, 471, 512, 542, 804
Tru9I	TTAA	6 cut(s)	290, 437, 471, 512, 542, 804
TseFI	GTSAC	2 cut(s)	162, 679
TseI	GCWGC	2 cut(s)	1050, 1074
Tsp45I	GTSAC	2 cut(s)	162, 679
TspDTI	ATGAA	5 cut(s)	219, 774, 1056, 1149, 1191
TspGWI	ACGGA	3 cut(s)	90, 1047, 1102
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	2 cut(s)	314, 1016
XmiI	GTMKAC	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.