Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008459.1

Orthogroup ID

OG0013874

Physical Location & Seq

Genomic Coordinates Forward (+)

9300 .. 11407

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atggcggtgatcagacacaggaaactcttcccagcaccattttcctcaaaccaaactgactgcccagactgcccagattgcacatatgattgttacccctatacagatttctatattcccccaccaccaccatttcctgccattgatcaaagtgaccaaaaccaccatatctcaccttatgtgattctgttcctctctttgctagctgggcttttccttctcattgcctactatgtcattatagtaaagtcctgtacaagtttctgcagtcctaatagaaacaatggatctccacagtccgaatcaaccagcggagatgaggaatttcttgcagagaatcaagttgatcacccaatatggttcatcaccaccgttggattgcagcaatctatcataaattctatcacagtttgtaagtataagaaatgtgagggattgattgaagggacagagtgctctgtttgtttaaatgagtttcatgaagatgagatgcttagattattgcccaagtgtagtcatgcttttcatatgaattgtattgatacttggttgaggtctcacacaaattgccctctatgccgtgcatatattacttctgagactctcggtaattcgaacgttgtgaggcttgatttgggttccggagatcaaaatggggatggcatagacacaaatggagataccctgatggagatttctgagattgaaagtgaattggatgtgaataatcaagtgggatatgacaatcaggtgtgtgaaaacagagctggaacagaggatgacggtgaagaacaccagtttggcaatggaactacatcaaaagaggtaataactcttaatgaagttccattaagaaggtctatttcgatggattcttcgtcggctgaaaccaagttccattcagatgttgctcgaaatcgtcaagtgacaagaggcacatcattgtcatcctcgatcaaaggtttggcaagtagaaaagatttggaggacctgcacacaagactaccaccaatcttttccagatctggggcgctaccactctctgcgagagcaagaggagtagcaaaccttgctgtgacggcatctatggaggccatggagaggaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

370

Amino Acids

41.06

Weight (kDa)

4.99

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72220
fragaria_vesca	FvH4_5g36252
malus_domestica	MD08G1190400.v1.1 MD15G1377700.v1.1
prunus_persica	Prupe.1G524400_v2.0.a1
pyrus_communis	pycom08g16360 pycom15g33840
rosa_chinensis	RchiOBHm_Chr7g0238151
rosa_laevigata	RLG00000000938
rosa_multiflora	Rmu_sc0008459.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223320
rosa_rugosa	Rorug07G0310600
rosa_samantha	Rh7AG466300 Rh7BG436800 Rh7CG484100 Rh7DG452500
rosa_wichuraiana	Rw7G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	999
AccIII	TCCGGA	1 cut(s)	641
AciI	CCGC	2 cut(s)	5, 312
AclI	AACGTT	1 cut(s)	618
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	323, 397
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	1026, 1101
AgsI	TTSAA	2 cut(s)	443, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	783, 815
AluBI	AGCT	2 cut(s)	206, 767
AluI	AGCT	2 cut(s)	206, 767
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	2 cut(s)	561, 593
AlwI	GGATC	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	641
AoxI	GGCC	1 cut(s)	1092
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	323, 397
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	1033
AspS9I	GGNCC	1 cut(s)	988
AsuHPI	GGTGA	5 cut(s)	19, 165, 341, 358, 797
AsuII	TTCGAA	1 cut(s)	614
AsuNHI	GCTAGC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	988
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	3 cut(s)	653, 682, 862
BceAI	ACGGC	2 cut(s)	564, 1095
BclI	TGATCA	3 cut(s)	9, 145, 346
BcoDI	GTCTC	2 cut(s)	561, 593
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	1034
BfuAI	ACCTGC	1 cut(s)	999
BglII	AGATCT	1 cut(s)	1022
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	988
BmgT120I	GGNCC	1 cut(s)	988
BmiI	GGNNCC	1 cut(s)	640
BmsI	GCATC	2 cut(s)	480, 1091
BmtI	GCTAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	1095
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	2 cut(s)	1026, 1101
Bse1I	ACTGG	1 cut(s)	796
Bse3DI	GCAATG	2 cut(s)	222, 811
BseAI	TCCGGA	1 cut(s)	641
BseDI	CCNNGG	1 cut(s)	1095
BseGI	GGATG	4 cut(s)	664, 724, 784, 947
BseLI	CCNNNNNNNGG	2 cut(s)	1026, 1101
BseMI	GCAATG	2 cut(s)	222, 811
BseMII	CTCAG	2 cut(s)	588, 690
BseNI	ACTGG	1 cut(s)	796
BseRI	GAGGAG	1 cut(s)	1071
BseXI	GCAGC	1 cut(s)	394
BseYI	CCCAGC	2 cut(s)	31, 206
BsgI	GTGCAG	1 cut(s)	977
BshFI	GGCC	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	1026, 1101
BsmAI	GTCTC	2 cut(s)	561, 593
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	1094
Bso31I	GGTCTC	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	641
Bsp1407I	TGTACA	1 cut(s)	254
Bsp143I	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
Bsp19I	CCATGG	1 cut(s)	1095
BspACI	CCGC	2 cut(s)	5, 312
BspANI	GGCC	1 cut(s)	1094
BspCNI	CTCAG	2 cut(s)	589, 691
BspEI	TCCGGA	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	640
BspMAI	CTGCAG	1 cut(s)	269
BspMI	ACCTGC	1 cut(s)	999
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	2 cut(s)	222, 811
BsrGI	TGTACA	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	796
BssECI	CCNNGG	1 cut(s)	1095
BssMI	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
BssT1I	CCWWGG	1 cut(s)	1095
Bst4CI	ACNGT	4 cut(s)	297, 373, 409, 785
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstAUI	TGTACA	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	494, 597, 699
BstDSI	CCRYGG	1 cut(s)	1095
BstF5I	GGATG	4 cut(s)	664, 724, 784, 947
BstH2I	RGCGCY	1 cut(s)	1034
BstHHI	GCGC	1 cut(s)	1033
BstKTI	GATC	7 cut(s)	12, 148, 290, 349, 649, 957, 1025
BstMAI	GTCTC	2 cut(s)	561, 593
BstMBI	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 78, 208, 576, 1070, 1079
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	287, 1022
BstYI	RGATCY	2 cut(s)	287, 1022
BsuRI	GGCC	1 cut(s)	1094
BtgI	CCRYGG	1 cut(s)	1095
BtsCI	GGATG	4 cut(s)	664, 724, 784, 947
BveI	ACCTGC	1 cut(s)	999
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	1033
Cfr13I	GGNCC	1 cut(s)	988
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	3 cut(s)	479, 518, 1096
CviJI	RGCY	6 cut(s)	206, 211, 628, 767, 884, 1094
CviKI_1	RGCY	6 cut(s)	206, 211, 628, 767, 884, 1094
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	3 cut(s)	494, 597, 699
DpnI	GATC	7 cut(s)	11, 147, 289, 348, 648, 956, 1024
DpnII	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
DraI	TTTAAA	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	1095
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	988
EcoO109I	RGGNCCY	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	1095
ErhI	CCWWGG	1 cut(s)	1095
FaeI	CATG	3 cut(s)	482, 521, 1099
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	478, 517, 1095
FauNDI	CATATG	2 cut(s)	85, 528
FbaI	TGATCA	3 cut(s)	9, 145, 346
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	4 cut(s)	671, 731, 791, 934
Fsp4HI	GCNGC	1 cut(s)	383
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	1032
GluI	GCNGC	1 cut(s)	383
GsaI	CCCAGC	2 cut(s)	35, 210
HaeII	RGCGCY	1 cut(s)	1034
HaeIII	GGCC	1 cut(s)	1094
HapII	CCGG	1 cut(s)	642
HhaI	GCGC	1 cut(s)	1033
Hin1II	CATG	3 cut(s)	482, 521, 1099
Hin6I	GCGC	1 cut(s)	1031
HinP1I	GCGC	1 cut(s)	1031
HinfI	GANTC	5 cut(s)	184, 302, 337, 601, 872
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	5 cut(s)	19, 165, 341, 358, 797
Hpy188I	TCNGA	5 cut(s)	14, 301, 598, 700, 904
Hpy188III	TCNNGA	3 cut(s)	479, 642, 1020
Hpy99I	CGWCG	1 cut(s)	883
HpyAV	CCTTC	3 cut(s)	227, 437, 849
HpyCH4III	ACNGT	4 cut(s)	297, 373, 409, 785
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	6 cut(s)	81, 267, 332, 382, 584, 994
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 78, 208, 576, 1070, 1079
HpyF3I	CTNAG	3 cut(s)	494, 597, 699
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	482, 521, 1099
HspAI	GCGC	1 cut(s)	1031
Kpn2I	TCCGGA	1 cut(s)	641
Ksp22I	TGATCA	3 cut(s)	9, 145, 346
Kzo9I	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	480, 1091
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	4 cut(s)	92, 152, 925, 1075
MalI	GATC	7 cut(s)	11, 147, 289, 348, 648, 956, 1024
MboI	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
MboII	GAAGA	4 cut(s)	19, 494, 800, 867
MflI	RGATCY	2 cut(s)	287, 1022
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	6 cut(s)	323, 397, 532, 565, 610, 713
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	355
MroI	TCCGGA	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	3 cut(s)	467, 837, 851
MslI	CAYNNNNRTG	2 cut(s)	483, 903
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	6 cut(s)	69, 78, 208, 576, 1070, 1079
NcoI	CCATGG	1 cut(s)	1095
NdeI	CATATG	2 cut(s)	85, 528
NdeII	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	482, 521, 1099
NlaIV	GGNNCC	1 cut(s)	640
NmuCI	GTSAC	3 cut(s)	152, 925, 1075
NspV	TTCGAA	1 cut(s)	614
PagI	TCATGA	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	184, 302, 337, 872
PkrI	GCNGC	1 cut(s)	384
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PpuMI	RGGWCCY	1 cut(s)	988
Psp1406I	AACGTT	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	988
PspFI	CCCAGC	2 cut(s)	31, 206
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	988
PspPPI	RGGWCCY	1 cut(s)	988
PstI	CTGCAG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	287, 1022
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	2 cut(s)	483, 903
SaqAI	TTAA	3 cut(s)	467, 837, 851
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	7 cut(s)	9, 145, 287, 346, 646, 954, 1022
Sau96I	GGNCC	1 cut(s)	988
SchI	GAGTC	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	458
SfaNI	GCATC	2 cut(s)	480, 1091
SfcI	CTRYAG	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	614
SinI	GGWCC	1 cut(s)	988
SmiMI	CAYNNNNRTG	2 cut(s)	483, 903
Sse9I	AATT	6 cut(s)	323, 397, 532, 565, 610, 713
SsiI	CCGC	2 cut(s)	5, 312
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	1095
TaaI	ACNGT	4 cut(s)	297, 373, 409, 785
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	4 cut(s)	614, 866, 913, 953
TasI	AATT	6 cut(s)	323, 397, 532, 565, 610, 713
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	4 cut(s)	184, 302, 337, 872
Tru1I	TTAA	3 cut(s)	467, 837, 851
Tru9I	TTAA	3 cut(s)	467, 837, 851
TseFI	GTSAC	3 cut(s)	152, 925, 1075
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	3 cut(s)	152, 925, 1075
TspDTI	ATGAA	6 cut(s)	352, 467, 495, 515, 545, 855
VpaK11BI	GGWCC	1 cut(s)	988
XapI	RAATTY	2 cut(s)	323, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.