RLG00000000938

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013874
Physical Location & Seq
Forward (+)
8180949 .. 8182797
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000938

Sequence Viewer

Length: 1050 bp
ATGGCGGTGATCAGACACAGGAAACTCTTCCCAGCACCATTCTCCTCAAACCAAACTGACTGCCCAGACTGCCCAGATTGCACATATGATTGTTACCCCTATACAGATTTCTATATTCCCCCACCACCACCATTTCCTGCCATTGTTCAAAGTGACCAAAACCACCATATCTCACCTTATGTGATTCTGTTCCTCTCTTTGCTAGCTGGGCTTTTCCTTCTCATTGCCTACTATGTCATTATAGTAAAGTCCTGTACAAGTTTCTGCAGTCCTAATAGAAACAATGGATCTCCACAGTCCGAATCAACCAGCGGAGATGAGGAATTTCTTGCAGAGAATCAAGTTGATCACCCAATATGGTTCATCACCACCGTTGGATTGCAGCAATCTATCATAAATTCCATCACAGTTTGTAAGTATAAGAAATGTGAGGGCTTGATTGAAGGGACAGAGTGCTCTGTTTGTTTAAATGAGTTTCATGAAGATGAGATGCTTAGATTATTGCCCAAGTGTAGTCATGCTTTTCATATGAATTGTATTGATACTTGGTTGAGGTCTCACACAAATTGTCCTCTATGCCGTGCCTATATTACTTCTGAGACTCTCGGTAATTCAAACATTGTGCGGCTTGATTTGGGTTCCGGAGATCAAAATGGGGATGGTATAGACACAAATGGAGATACCCTGATAGAGATTTCTGAGATTGAAAGTGAATTGGATGTGAATAATCAAGTGGGATATGACAATCAGGTGTGTGAAAACAGAGCTGGAACAGAGGATGAAGGTGAAGAACACCAGTTTGGCAATGGAACTACATCAAAAGAGGTAATAACTCTTAATGAAGTTCCATTAAGAAGGTCTATTTCGATGGATTCTTCGTCGGCTGAAACCAAGTTCCATTCAGATGTTGCTCGAAATCGTCAGTCTTCAATTGAGCAATGTCTTCATATAAGTCCTGTTTTGATGAAAAGGTCTTTTTCTTGTGGTGGAAGGTCGAGATTGTTGTCTTTGAGACATAAATGGGGGATGAATTCAGTTGTTCCCCTCTGA

Protein Analysis

350

Amino Acids

39.03

Weight (kDa)

5.01

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 151 - 194 6e-14 Ring finger domain
zf-RING_11 PF17123 151 - 180 2.4e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 151 - 193 9.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 152 - 194 2.6e-09 RING-H2 zinc finger domain
zf-C3HC4 PF00097 152 - 193 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 158 - 197 8.3e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72220
fragaria_vesca FvH4_5g36252
malus_domestica MD08G1190400.v1.1 MD15G1377700.v1.1
prunus_persica Prupe.1G524400_v2.0.a1
pyrus_communis pycom08g16360 pycom15g33840
rosa_chinensis RchiOBHm_Chr7g0238151
rosa_laevigata RLG00000000938
rosa_multiflora Rmu_sc0008459.1_g000001
rosa_roxburghii Rroxscaffold_3G00223320
rosa_rugosa Rorug07G0310600
rosa_samantha Rh7AG466300 Rh7BG436800 Rh7CG484100 Rh7DG452500
rosa_wichuraiana Rw7G038610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 641
AciI CCGC 3 cut(s) 5, 312, 625
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 3 cut(s) 323, 397, 1030
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 5 cut(s) 149, 443, 615, 707, 930
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 2 cut(s) 206, 767
AluI AGCT 2 cut(s) 206, 767
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 3 cut(s) 561, 593, 1006
AlwI GGATC 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 641
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 3 cut(s) 323, 397, 1030
Asp700I GAANNNNTTC 1 cut(s) 26
AsuHPI GGTGA 5 cut(s) 19, 165, 341, 358, 797
AsuNHI GCTAGC 1 cut(s) 202
BbsI GAAGAC 2 cut(s) 918, 935
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 394
BccI CCATC 3 cut(s) 410, 653, 862
BceAI ACGGC 1 cut(s) 564
BclI TGATCA 2 cut(s) 9, 346
BcoDI GTCTC 3 cut(s) 561, 593, 1006
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 2 cut(s) 383, 626
BlsI GCNGC 2 cut(s) 384, 627
BmiI GGNNCC 1 cut(s) 640
BmsI GCATC 1 cut(s) 480
BmtI GCTAGC 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 918, 935
BsaI GGTCTC 1 cut(s) 561
BsaWI WCCGGW 1 cut(s) 641
Bse1I ACTGG 1 cut(s) 796
Bse3DI GCAATG 3 cut(s) 222, 811, 944
BseAI TCCGGA 1 cut(s) 641
BseGI GGATG 4 cut(s) 664, 724, 784, 1032
BseMI GCAATG 3 cut(s) 222, 811, 944
BseMII CTCAG 2 cut(s) 588, 690
BseNI ACTGG 1 cut(s) 796
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 394
BseYI CCCAGC 2 cut(s) 31, 206
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 3 cut(s) 561, 593, 1006
BsmFI GGGAC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 458
Bsp13I TCCGGA 1 cut(s) 641
Bsp1407I TGTACA 1 cut(s) 254
Bsp143I GATC 4 cut(s) 9, 287, 346, 646
BspACI CCGC 3 cut(s) 5, 312, 625
BspCNI CTCAG 2 cut(s) 589, 691
BspEI TCCGGA 1 cut(s) 641
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 640
BspMAI CTGCAG 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 561
BsrDI GCAATG 3 cut(s) 222, 811, 944
BsrGI TGTACA 1 cut(s) 254
BsrI ACTGG 1 cut(s) 796
BssMI GATC 4 cut(s) 9, 287, 346, 646
Bst4CI ACNGT 3 cut(s) 297, 373, 409
Bst6I CTCTTC 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 494, 597, 699
BstF5I GGATG 4 cut(s) 664, 724, 784, 1032
BstKTI GATC 4 cut(s) 12, 290, 349, 649
BstMAI GTCTC 3 cut(s) 561, 593, 1006
BstMBI GATC 4 cut(s) 9, 287, 346, 646
BstMWI GCNNNNNNNGC 3 cut(s) 69, 78, 208
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 2 cut(s) 918, 935
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BtsCI GGATG 4 cut(s) 664, 724, 784, 1032
Cac8I GCNNGC 1 cut(s) 204
CciI TCATGA 1 cut(s) 478
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 479, 518
CviJI RGCY 6 cut(s) 206, 211, 435, 628, 767, 884
CviKI_1 RGCY 6 cut(s) 206, 211, 435, 628, 767, 884
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 3 cut(s) 494, 597, 699
DpnI GATC 4 cut(s) 11, 289, 348, 648
DpnII GATC 4 cut(s) 9, 287, 346, 646
DraI TTTAAA 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 561
EcoRI GAATTC 1 cut(s) 1030
FaeI CATG 2 cut(s) 482, 521
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 478, 517
FauNDI CATATG 2 cut(s) 85, 528
FbaI TGATCA 2 cut(s) 9, 346
Fnu4HI GCNGC 2 cut(s) 383, 626
FokI GGATG 4 cut(s) 671, 731, 791, 1039
Fsp4HI GCNGC 2 cut(s) 383, 626
FspBI CTAG 1 cut(s) 203
GluI GCNGC 2 cut(s) 383, 626
GsaI CCCAGC 2 cut(s) 35, 210
HapII CCGG 1 cut(s) 642
Hin1II CATG 2 cut(s) 482, 521
HinfI GANTC 5 cut(s) 184, 302, 337, 601, 872
HpaII CCGG 1 cut(s) 642
HphI GGTGA 5 cut(s) 19, 165, 341, 358, 797
Hpy188I TCNGA 6 cut(s) 14, 301, 598, 700, 904, 1049
Hpy188III TCNNGA 3 cut(s) 479, 642, 996
Hpy99I CGWCG 1 cut(s) 883
HpyAV CCTTC 5 cut(s) 227, 437, 776, 849, 984
HpyCH4III ACNGT 3 cut(s) 297, 373, 409
HpyCH4V TGCA 4 cut(s) 81, 267, 332, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 78, 208
HpyF3I CTNAG 3 cut(s) 494, 597, 699
Hsp92II CATG 2 cut(s) 482, 521
Kpn2I TCCGGA 1 cut(s) 641
Ksp22I TGATCA 2 cut(s) 9, 346
Kzo9I GATC 4 cut(s) 9, 287, 346, 646
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 480
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 2 cut(s) 92, 152
MalI GATC 4 cut(s) 11, 289, 348, 648
MboI GATC 4 cut(s) 9, 287, 346, 646
MboII GAAGA 6 cut(s) 19, 494, 800, 867, 918, 935
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 8 cut(s) 323, 397, 532, 565, 610, 713, 930, 1030
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 8 cut(s) 55, 203, 313, 424, 546, 582, 769, 817
MroI TCCGGA 1 cut(s) 641
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 3 cut(s) 467, 837, 851
MslI CAYNNNNRTG 2 cut(s) 483, 903
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 930
MwoI GCNNNNNNNGC 3 cut(s) 69, 78, 208
NdeI CATATG 2 cut(s) 85, 528
NdeII GATC 4 cut(s) 9, 287, 346, 646
NheI GCTAGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 482, 521
NlaIV GGNNCC 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 152
PagI TCATGA 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 4 cut(s) 184, 302, 337, 872
PkrI GCNGC 2 cut(s) 384, 627
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PspFI CCCAGC 2 cut(s) 31, 206
PspN4I GGNNCC 1 cut(s) 640
PstI CTGCAG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 2 cut(s) 483, 903
SaqAI TTAA 3 cut(s) 467, 837, 851
SatI GCNGC 2 cut(s) 383, 626
Sau3AI GATC 4 cut(s) 9, 287, 346, 646
SchI GAGTC 1 cut(s) 595
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 480
SfcI CTRYAG 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 483, 903
Sse9I AATT 8 cut(s) 323, 397, 532, 565, 610, 713, 930, 1030
SsiI CCGC 3 cut(s) 5, 312, 625
SspMI CTAG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 297, 373, 409
TaqI TCGA 3 cut(s) 866, 913, 995
TasI AATT 8 cut(s) 323, 397, 532, 565, 610, 713, 930, 1030
TatI WGTACW 1 cut(s) 254
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 4 cut(s) 184, 302, 337, 872
Tru1I TTAA 3 cut(s) 467, 837, 851
Tru9I TTAA 3 cut(s) 467, 837, 851
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 152
XapI RAATTY 3 cut(s) 323, 397, 1030
XcmI CCANNNNNNNNNTGG 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.