Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013874

Physical Location & Seq

Genomic Coordinates Forward (+)

42983969 .. 42985589

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G524400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGATTTCCTCAACACACACTTCTTTAATGGCAGTGATCAAGCACAGAAAACTCTTCCCAGCTGCACCAGTTTCCACAAACCAAACTGACTGTCCAGAATTTTGTGGCCCGGATTGTGCATATGGCTGCTACCCTTATGCAGATTTCTACATCCCACCACCCCCACCATTTTCTGCAATTGATCAAAATGACCAAAACCACCATATCTCACCATATGTGGTGCTCTTAGTGTCTTTGCTAGGCAGTCTTTTGCTCCTTATTGGCTACTATGTTATTGTGGTAAAGTCTTACACAAGTTTGTGTAGCTACAGAAGCAATGGATCCTCTCTCTCTCAATCTGGCAGCACAGATGAGGAGTTTCTTGCAGAGAACCAAGGAGACCATCCGGTGTGGCTCATCTCCACCGTTGGATTGCAACAGTCGATCATAAATTCAATCACAGTTTGTAAGTACAAGAAAGATGAGGGCTTGATTGAAGGAGCCGAGTGTTCGGTTTGTTTGAATGAGTTTCAGGAAGATGAGACTCTCAGGCTGTTGCCCAAGTGCAGCCATGCTTTTCATGTCTCTTGTATTGATACTTGGTTGAGGTCTCACACGAATTGCCCGCTGTGCCGAGCTAATATTCTGAGGCCTCCTAATTTGGCTTCTGTGGACACAAATGAAGAGACCCAAGTGGAAAATTCTGAGAGTGAAATTGCATTGGGTGTGGATAATCAACAGGGATATGATGAGGTTTGTGAAAGCATAGCTGAAACAGAGGATGAAGGTGAAGAAGAACACCAAGTTGGTCTTGAAAATACATCAAAGGAGGCAACAAATTCTAACGGGAATTCCATTCTTGAACTTATAAGGAGGTCCTGGTCTTTTGATTCTTCCTTGGCTGCAAACATGTTAGTCATCAAATTGAAGAATGCTGAGAAATTGCATTCAGATGTTGCTCGAAAGCGATATTCTTCAATTGGTCAATCTCTACATTTAAGCCCTGTTTTGATGAAGAGGTCTTTGAGACGTAAGTGGAGCATGATTTCTGTTCTTCCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

348

Amino Acids

38.56

Weight (kDa)

5.1

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72220
fragaria_vesca	FvH4_5g36252
malus_domestica	MD08G1190400.v1.1 MD15G1377700.v1.1
prunus_persica	Prupe.1G524400_v2.0.a1
pyrus_communis	pycom08g16360 pycom15g33840
rosa_chinensis	RchiOBHm_Chr7g0238151
rosa_laevigata	RLG00000000938
rosa_multiflora	Rmu_sc0008459.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223320
rosa_rugosa	Rorug07G0310600
rosa_samantha	Rh7AG466300 Rh7BG436800 Rh7CG484100 Rh7DG452500
rosa_wichuraiana	Rw7G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	848
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	2 cut(s)	315, 328
AcsI	RAATTY	5 cut(s)	98, 430, 679, 817, 829
AfaI	GTAC	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	7 cut(s)	435, 476, 502, 794, 842, 907, 957
AjnI	CCWGG	1 cut(s)	857
AjuI	GAANNNNNNNTTGG	2 cut(s)	768, 800
AluBI	AGCT	4 cut(s)	62, 306, 617, 749
AluI	AGCT	4 cut(s)	62, 306, 617, 749
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	6 cut(s)	372, 515, 568, 594, 659, 1000
AlwI	GGATC	2 cut(s)	315, 328
AoxI	GGCC	2 cut(s)	106, 629
ApeKI	GCWGC	5 cut(s)	62, 126, 342, 546, 881
ApoI	RAATTY	5 cut(s)	98, 430, 679, 817, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspS9I	GGNCC	2 cut(s)	107, 855
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	201, 779
AvaII	GGWCC	1 cut(s)	855
BamHI	GGATCC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	5 cut(s)	49, 113, 354, 558, 868
BccI	CCATC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	859
BclI	TGATCA	2 cut(s)	36, 181
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	6 cut(s)	372, 515, 568, 594, 659, 1000
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	5 cut(s)	63, 127, 343, 547, 882
BlsI	GCNGC	5 cut(s)	64, 128, 344, 548, 883
Bme1390I	CCNGG	2 cut(s)	110, 859
Bme18I	GGWCC	1 cut(s)	855
BmgT120I	GGNCC	2 cut(s)	107, 855
BmiI	GGNNCC	2 cut(s)	322, 481
BmrFI	CCNGG	2 cut(s)	110, 859
BmrI	ACTGGG	1 cut(s)	1033
BmuI	ACTGGG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	110
BsaI	GGTCTC	3 cut(s)	372, 594, 659
BsaJI	CCNNGG	2 cut(s)	373, 876
BsaWI	WCCGGW	1 cut(s)	385
Bse1I	ACTGG	2 cut(s)	68, 1039
Bse3DI	GCAATG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	859
BseDI	CCNNGG	2 cut(s)	373, 876
BseGI	GGATG	3 cut(s)	150, 382, 766
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	4 cut(s)	541, 617, 675, 906
BseNI	ACTGG	2 cut(s)	68, 1039
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	5 cut(s)	49, 113, 354, 558, 868
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	2 cut(s)	48, 565
BshFI	GGCC	2 cut(s)	108, 631
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	110, 386
BsmAI	GTCTC	6 cut(s)	372, 515, 568, 594, 659, 1000
BsmBI	CGTCTC	1 cut(s)	1000
BsmI	GAATGC	2 cut(s)	916, 925
BsnI	GGCC	2 cut(s)	108, 631
Bso31I	GGTCTC	3 cut(s)	372, 594, 659
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	36, 181, 320, 423
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	2 cut(s)	108, 631
BspCNI	CTCAG	4 cut(s)	540, 618, 676, 907
BspLI	GGNNCC	2 cut(s)	322, 481
BspPI	GGATC	2 cut(s)	315, 328
BspTNI	GGTCTC	3 cut(s)	372, 594, 659
BsrDI	GCAATG	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	68, 1039
BssECI	CCNNGG	2 cut(s)	373, 876
BssMI	GATC	4 cut(s)	36, 181, 320, 423
BssT1I	CCWWGG	2 cut(s)	373, 876
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	4 cut(s)	92, 406, 420, 442
Bst6I	CTCTTC	3 cut(s)	59, 657, 989
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	5 cut(s)	226, 527, 626, 684, 915
BstF5I	GGATG	3 cut(s)	150, 382, 766
BstKTI	GATC	4 cut(s)	39, 184, 323, 426
BstMAI	GTCTC	6 cut(s)	372, 515, 568, 594, 659, 1000
BstMBI	GATC	4 cut(s)	36, 181, 320, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 609
BstNI	CCWGG	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	2 cut(s)	108, 857
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	5 cut(s)	49, 113, 354, 558, 868
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	108, 631
BtsCI	GGATG	3 cut(s)	150, 382, 766
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	107, 855
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	4 cut(s)	551, 560, 889, 1021
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	5 cut(s)	226, 527, 626, 684, 915
DpnI	GATC	4 cut(s)	38, 183, 322, 425
DpnII	GATC	4 cut(s)	36, 181, 320, 423
Eam1104I	CTCTTC	3 cut(s)	59, 657, 989
EarI	CTCTTC	3 cut(s)	59, 657, 989
Eco130I	CCWWGG	2 cut(s)	373, 876
Eco147I	AGGCCT	1 cut(s)	631
Eco31I	GGTCTC	3 cut(s)	372, 594, 659
Eco47I	GGWCC	1 cut(s)	855
EcoO109I	RGGNCCY	1 cut(s)	855
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	857
EcoT14I	CCWWGG	2 cut(s)	373, 876
ErhI	CCWWGG	2 cut(s)	373, 876
Esp3I	CGTCTC	1 cut(s)	1000
FaeI	CATG	4 cut(s)	554, 563, 892, 1024
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FatI	CATG	4 cut(s)	550, 559, 888, 1020
FauI	CCCGC	1 cut(s)	612
FauNDI	CATATG	2 cut(s)	121, 214
FbaI	TGATCA	2 cut(s)	36, 181
Fnu4HI	GCNGC	5 cut(s)	63, 127, 343, 547, 882
FokI	GGATG	3 cut(s)	137, 369, 773
Fsp4HI	GCNGC	5 cut(s)	63, 127, 343, 547, 882
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	5 cut(s)	63, 127, 343, 547, 882
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	108, 631
HapII	CCGG	2 cut(s)	110, 386
Hin1II	CATG	4 cut(s)	554, 563, 892, 1024
HinfI	GANTC	2 cut(s)	523, 869
HpaII	CCGG	2 cut(s)	110, 386
HphI	GGTGA	2 cut(s)	201, 779
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	627, 685, 931
Hpy188III	TCNNGA	4 cut(s)	95, 512, 791, 839
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	2 cut(s)	470, 758
HpyCH4III	ACNGT	4 cut(s)	92, 406, 420, 442
HpyCH4IV	ACGT	1 cut(s)	1009
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 609
HpyF3I	CTNAG	5 cut(s)	226, 527, 626, 684, 915
HpySE526I	ACGT	1 cut(s)	1009
Hsp92II	CATG	4 cut(s)	554, 563, 892, 1024
Ksp22I	TGATCA	2 cut(s)	36, 181
Kzo9I	GATC	4 cut(s)	36, 181, 320, 423
LmnI	GCTCC	3 cut(s)	258, 479, 1017
Lsp1109I	GCAGC	5 cut(s)	49, 113, 354, 558, 868
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	1009
MalI	GATC	4 cut(s)	38, 183, 322, 425
MboI	GATC	4 cut(s)	36, 181, 320, 423
MfeI	CAATTG	2 cut(s)	177, 957
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	388
MseI	TTAA	2 cut(s)	26, 977
MslI	CAYNNNNRTG	1 cut(s)	930
MspA1I	CMGCKG	2 cut(s)	62, 607
MspI	CCGG	2 cut(s)	110, 386
MspR9I	CCNGG	2 cut(s)	110, 859
MunI	CAATTG	2 cut(s)	177, 957
Mva1269I	GAATGC	2 cut(s)	916, 925
MvaI	CCWGG	1 cut(s)	859
MwoI	GCNNNNNNNGC	2 cut(s)	312, 609
NciI	CCSGG	1 cut(s)	110
NdeI	CATATG	2 cut(s)	121, 214
NdeII	GATC	4 cut(s)	36, 181, 320, 423
NlaIII	CATG	4 cut(s)	554, 563, 892, 1024
NlaIV	GGNNCC	2 cut(s)	322, 481
NmeAIII	GCCGAG	2 cut(s)	508, 638
NspI	RCATGY	1 cut(s)	892
PceI	AGGCCT	1 cut(s)	631
PciI	ACATGT	1 cut(s)	888
PctI	GAATGC	2 cut(s)	916, 925
PfeI	GAWTC	1 cut(s)	869
PkrI	GCNGC	5 cut(s)	64, 128, 344, 548, 883
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	855
PscI	ACATGT	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	848
Psp5II	RGGWCCY	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	322, 481
PspPI	GGNCC	2 cut(s)	107, 855
PspPPI	RGGWCCY	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	930
SaqAI	TTAA	2 cut(s)	26, 977
SatI	GCNGC	5 cut(s)	63, 127, 343, 547, 882
Sau3AI	GATC	4 cut(s)	36, 181, 320, 423
Sau96I	GGNCC	2 cut(s)	107, 855
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	110, 859
SduI	GDGCHC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	855
SmiMI	CAYNNNNRTG	1 cut(s)	930
SseBI	AGGCCT	1 cut(s)	631
SsiI	CCGC	1 cut(s)	605
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	108, 857
StyI	CCWWGG	2 cut(s)	373, 876
TaaI	ACNGT	4 cut(s)	92, 406, 420, 442
TaiI	ACGT	1 cut(s)	1012
TaqI	TCGA	2 cut(s)	422, 940
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	2 cut(s)	26, 977
Tru9I	TTAA	2 cut(s)	26, 977
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	5 cut(s)	62, 126, 342, 546, 881
TspDTI	ATGAA	4 cut(s)	548, 675, 777, 1007
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	855
XapI	RAATTY	5 cut(s)	98, 430, 679, 817, 829
XceI	RCATGY	1 cut(s)	892
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.