Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013874

Physical Location & Seq

Genomic Coordinates Forward (+)

46284939 .. 46285976

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1377700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAATTTCCTCAATAATACACCCTCTTTAATGGCAGTCATCAAACACAGAAAGCTCTTCCCATCTGCACCAATTTCCACAAACCAAACTGAATGTCCTTACTTTTGCGGCCCCGATTGCACGTACGAATGTTACCCTTATGCCGATTATTATACACCACCACCACCACCAATTCCGGTTAACGATCAAAGCAACCAAAACATCCATATCTCACCTTATGTGGTGCTCTTTGTCTCTTTGCTAGCCAGTTTTTTTCTTCTTATTGGGTACTATCTTATTGTGGTAAAGTCTTGCACAAGTTGGTACAGTCACAGAAGTAATGGATCTTCGCCCTCTCAATCTAGCGGCACGGATCAAGAGTTACTTGCAGATCAAGTAGACCATCCGATCTGGTTCATCTCCACAATTGGTTTACAACAGTCGATCATAAATTCAATTTCAGTTTGTAAGTACAGGAAAGACGAGGGCTTGATCGAAGGTACCGAATGTTCGGTTTGTTTGACTGAGTTTCAAGAAGATGACACTATAAGGCTATTGCCAAAGTGCAATCATGCTTTTCACATTCCTTGTATAGACACTTGGTTGAGGTCTCACACGAATTGCCCGCTATGCCGCGCTAATATTGTGAGCGAGACTGTGATCAGTGCTTCCTCAGACACAAATGGAGAATCCCAGATGGAGAACGCTGAGAGTGAAGGTGAAATTGGTGCAAATAATCAAGTGGGATATCAAGAGGATTTCGAAAACAGAGCTGGGGTGGATGATGAAGGAGAAGACCACCAATTTGATCATGAAAATATACCAAAACGGGAAATAAATTCCAAAGGAAATTGGATTCTTGAAAGAAGGTCCATTTCAATTATTTCCTCATTGGCTCCAAAAAAGTTAGTCATCAAACTGCAGAATGCTGAGAAATTCCATTCGGACCTTGCTCGAAAGCGTCATCGTCCGATTAGGCAATTTCTACATATAAGCCCTGTTTTGATGAAAAGGTCTTTGAGACGTAAGTGGAGCAAAATTTCAGTTGTTCCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

346

Amino Acids

39.14

Weight (kDa)

6.06

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	162 - 205	7.3e-14	Ring finger domain
zf-RING_11	PF17123	162 - 191	3e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	162 - 204	8.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	163 - 205	3.1e-10	RING-H2 zinc finger domain
zf-C3HC4	PF00097	163 - 204	1.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	163 - 208	4.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72220
fragaria_vesca	FvH4_5g36252
malus_domestica	MD08G1190400.v1.1 MD15G1377700.v1.1
prunus_persica	Prupe.1G524400_v2.0.a1
pyrus_communis	pycom08g16360 pycom15g33840
rosa_chinensis	RchiOBHm_Chr7g0238151
rosa_laevigata	RLG00000000938
rosa_multiflora	Rmu_sc0008459.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223320
rosa_rugosa	Rorug07G0310600
rosa_samantha	Rh7AG466300 Rh7BG436800 Rh7CG484100 Rh7DG452500
rosa_wichuraiana	Rw7G038610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	1 cut(s)	615
AciI	CCGC	4 cut(s)	108, 345, 605, 613
AclWI	GGATC	2 cut(s)	331, 360
AcsI	RAATTY	5 cut(s)	4, 430, 817, 914, 1017
AfaI	GTAC	5 cut(s)	125, 269, 305, 452, 481
AgsI	TTSAA	4 cut(s)	435, 512, 842, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	2 cut(s)	55, 752
AluI	AGCT	2 cut(s)	55, 752
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	4 cut(s)	238, 594, 626, 994
AlwI	GGATC	2 cut(s)	331, 360
AoxI	GGCC	1 cut(s)	109
ApoI	RAATTY	5 cut(s)	4, 430, 817, 914, 1017
ArsI	GACNNNNNNTTYG	4 cut(s)	79, 111, 767, 799
Asp718I	GGTACC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	3 cut(s)	110, 849, 925
AsuHPI	GGTGA	2 cut(s)	204, 710
AsuII	TTCGAA	1 cut(s)	741
AsuNHI	GCTAGC	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	849, 925
BanI	GGYRCC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	3 cut(s)	70, 390, 670
BclI	TGATCA	2 cut(s)	639, 787
BcoDI	GTCTC	4 cut(s)	238, 594, 626, 994
BfaI	CTAG	2 cut(s)	242, 342
BfmI	CTRYAG	1 cut(s)	899
BisI	GCNGC	3 cut(s)	109, 346, 613
BlsI	GCNGC	3 cut(s)	110, 347, 614
Bme18I	GGWCC	2 cut(s)	849, 925
BmgT120I	GGNCC	3 cut(s)	110, 849, 925
BmiI	GGNNCC	3 cut(s)	112, 481, 876
BmtI	GCTAGC	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	246
BseGI	GGATG	3 cut(s)	201, 382, 766
BseMII	CTCAG	4 cut(s)	495, 666, 678, 900
BseNI	ACTGG	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	752
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	176
BsiWI	CGTACG	1 cut(s)	123
BsmAI	GTCTC	4 cut(s)	238, 594, 626, 994
BsmBI	CGTCTC	1 cut(s)	994
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	594
Bsp119I	TTCGAA	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
BspACI	CCGC	4 cut(s)	108, 345, 605, 613
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	4 cut(s)	496, 665, 679, 901
BspFNI	CGCG	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	3 cut(s)	112, 481, 876
BspMAI	CTGCAG	1 cut(s)	903
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	331, 360
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	246
BssMI	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
Bst4CI	ACNGT	3 cut(s)	308, 420, 637
Bst6I	CTCTTC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	243, 605
BstDEI	CTNAG	4 cut(s)	504, 652, 687, 909
BstF5I	GGATG	3 cut(s)	201, 382, 766
BstFNI	CGCG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	9 cut(s)	187, 326, 355, 373, 390, 426, 474, 642, 790
BstMAI	GTCTC	4 cut(s)	238, 594, 626, 994
BstMBI	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 609
BstSFI	CTRYAG	1 cut(s)	899
BstUI	CGCG	1 cut(s)	615
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	201, 382, 766
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	2 cut(s)	243, 605
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	110, 849, 925
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	5 cut(s)	124, 268, 304, 451, 480
CviAII	CATG	2 cut(s)	551, 791
CviJI	RGCY	8 cut(s)	55, 111, 245, 468, 532, 752, 875, 975
CviKI_1	RGCY	8 cut(s)	55, 111, 245, 468, 532, 752, 875, 975
CviQI	GTAC	5 cut(s)	124, 268, 304, 451, 480
DdeI	CTNAG	4 cut(s)	504, 652, 687, 909
DpnI	GATC	9 cut(s)	186, 325, 354, 372, 389, 425, 473, 641, 789
DpnII	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	594
Eco32I	GATATC	1 cut(s)	728
Eco47I	GGWCC	2 cut(s)	849, 925
EcoRV	GATATC	1 cut(s)	728
Esp3I	CGTCTC	1 cut(s)	994
FaeI	CATG	2 cut(s)	554, 794
FalI	AAGNNNNNCTT	2 cut(s)	348, 380
FatI	CATG	2 cut(s)	550, 790
FauI	CCCGC	1 cut(s)	612
FbaI	TGATCA	2 cut(s)	639, 787
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	109, 346, 613
FokI	GGATG	3 cut(s)	188, 369, 773
Fsp4HI	GCNGC	3 cut(s)	109, 346, 613
FspBI	CTAG	2 cut(s)	242, 342
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	3 cut(s)	109, 346, 613
GsaI	CCCAGC	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	554, 794
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	668, 835
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	204, 710
Hpy166II	GTNNAC	3 cut(s)	181, 379, 413
Hpy188I	TCNGA	4 cut(s)	387, 655, 925, 951
Hpy188III	TCNNGA	5 cut(s)	356, 512, 731, 791, 839
Hpy8I	GTNNAC	3 cut(s)	181, 379, 413
HpyAV	CCTTC	4 cut(s)	470, 689, 761, 840
HpyCH4III	ACNGT	3 cut(s)	308, 420, 637
HpyCH4IV	ACGT	2 cut(s)	122, 1003
HpyCH4V	TGCA	7 cut(s)	68, 120, 294, 368, 546, 710, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 609
HpyF3I	CTNAG	4 cut(s)	504, 652, 687, 909
HpySE526I	ACGT	2 cut(s)	122, 1003
Hsp92II	CATG	2 cut(s)	554, 794
HspAI	GCGC	1 cut(s)	615
KpnI	GGTACC	1 cut(s)	483
Ksp22I	TGATCA	2 cut(s)	639, 787
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	880, 1011
LpnPI	CCDG	7 cut(s)	189, 259, 376, 439, 686, 738, 990
MaeI	CTAG	2 cut(s)	242, 342
MaeII	ACGT	2 cut(s)	122, 1003
MaeIII	GTNAC	3 cut(s)	131, 308, 360
MalI	GATC	9 cut(s)	186, 325, 354, 372, 389, 425, 473, 641, 789
MboI	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
MboII	GAAGA	5 cut(s)	49, 248, 318, 527, 785
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	8 cut(s)	20, 34, 343, 457, 579, 661, 727, 877
MseI	TTAA	2 cut(s)	29, 180
MspI	CCGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	910
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	2 cut(s)	117, 609
NdeII	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	554, 794
NlaIV	GGNNCC	3 cut(s)	112, 481, 876
NmuCI	GTSAC	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	741
PagI	TCATGA	1 cut(s)	790
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	1 cut(s)	910
PfeI	GAWTC	2 cut(s)	668, 835
Pfl23II	CGTACG	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	110, 347, 614
Ppu21I	YACGTR	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	752
PspLI	CGTACG	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	112, 481, 876
PspPI	GGNCC	3 cut(s)	110, 849, 925
PsrI	GAACNNNNNNTAC	2 cut(s)	472, 504
PstI	CTGCAG	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	5 cut(s)	125, 269, 305, 452, 481
RsaNI	GTAC	5 cut(s)	124, 268, 304, 451, 480
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	29, 180
SatI	GCNGC	3 cut(s)	109, 346, 613
Sau3AI	GATC	9 cut(s)	184, 323, 352, 370, 387, 423, 471, 639, 787
Sau96I	GGNCC	3 cut(s)	110, 849, 925
SduI	GDGCHC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	899
SfuI	TTCGAA	1 cut(s)	741
SinI	GGWCC	2 cut(s)	849, 925
SsiI	CCGC	4 cut(s)	108, 345, 605, 613
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	242, 342
TaaI	ACNGT	3 cut(s)	308, 420, 637
TaiI	ACGT	2 cut(s)	125, 1006
TaqI	TCGA	4 cut(s)	422, 474, 741, 934
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	3 cut(s)	111, 348, 615
TfiI	GAWTC	2 cut(s)	668, 835
Tru1I	TTAA	2 cut(s)	29, 180
Tru9I	TTAA	2 cut(s)	29, 180
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	5 cut(s)	17, 385, 780, 807, 1001
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	2 cut(s)	849, 925
XapI	RAATTY	5 cut(s)	4, 430, 817, 914, 1017
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	2 cut(s)	242, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.