AT1G72790

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009631
Physical Location & Seq
Forward (+)
27394598 .. 27396799
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72790.1

Sequence Viewer

Length: 1686 bp
ATGGAAGAAGATGATGGAGACGCGTCTACGCCGTTTTGGCTTCAATCACGCCGCAATAACACTTACTTCCGCCGCACTGCAAGTCTCGGTGGCCGTACAACCACCATCGCCACTCAAATATTCTTCGCCGGAACAGCTGCAATCCTCATAGTCGTCTTCATTATCCCTCCTTTCTTCTCCTCTGTTTCTCAGATTTTCCGACCTCATTTAGTCCGTAAAAGCTGGGATTATCTCAACTTCGTTCTCGTCCTTTTCGCCGTCCTTTGCGGCTTCCTCAGCCGCAACACCAATAATGACGAATCCAATCATCACAAAGAAGAAGACATTCGTAACAAATTCTCGACTTCACCATCGATTATTGATCGAAGAAGTCGTGTATCTAACAGTGGTACAACGCCGCGTTATTGGAACGATGATCGCGGTGGTGGCGGCGGTGATCAAACGGTGTACAAGAGGTTTAGTAGATTACGAAGTGTTAGCTCGTATCCAGATCTGAGGCTCCGGGAATACGAAGCCGATGAACGGTGGAGATTCTACGATGATACACGTGTAAGTCAATGCCGTTATGAAGATGTAGATCCGATCTATCCAAATCAAAGTTACAGAAACTGGCATGAGGAAGGTAAACCACCGCCGGAAGATGTAGATCAAACAGAGGACGGTGATAATGGAGAAGGAAGTAAGGTCCGTAACGGCGGTTCGGAAACTGAGAAAGTTGAGGTGGTTGCGACGGCGGAAGCTGAAGTAGTAGAAGAGCTAAAAGTGCCTTCTGCTCCGCCGTATATTCCGTCTCCTCCGCCGTCTCCGCCACGTCCTCCACCAGCGAAGCAAGCGAAGAGAAAGACTAATAGAGTGTACCAAGATGTTTCTCCACAGGAAGAGAAGAAAGAAAGAGATGATTTTGTAGCGACGACGACGCCGATTCCACCTCCGGCGACTGTGTATCAAAAGAGCAATAAACAGGAGAAGAAGAAAGGAGGAGCAACGAAAGACTTTCTGATTGCGTTACGGAGAAAGAAGAAGAAGCAGAGACAACAGAGCATCGATGGCCTCGATCTCCTCTTCGGCTCCGATCCTCCATTGGTCTATTCACCACCACCGCCGCCGCCTCCTCCACCACCTTTCTTCCAAGGGCTTTTCTCATCCAAAAAAGGTAAAAGCAAAAAAAACAATTCAAATCCACCGCCTCCTCCTCCTCCACCACCACCTGAACGGAGATATGAATCACGCGCATCAACCTCGAAGCTCCGAAAAGCTCCGGTGGAATCACGGACATCCAAACCAAATCCGCCAGCTAAAGTAACTCAATACGTAGGCACAGGAAGCGAATCACCACTAATGCCGATCCCGCCGCCGCCTCCTCCTCCGCCGTTTAAAATGCCGGCTTGGAAATTCGTGAAGCGTGGAGATTACGTCAGGATGGCTAGTGACATCAGCATAAGCTCCGACGAACCTGATGATCCGGATGTAGCTCAATCAGCTGGAAGTAAGGAGGCCGCCGGGAGTATGTTCTGTCCGAGCCCCGACGTAGATACCAAAGCCGATGATTTCATCGCAAGATTCAGAGCCGGACTCAAATTGGAGAAGATGAACTCTGTGAAAAGAGGGAGATCCAATTTAGGACCCGAACCCGGACTTCATGAATCCGGATCTTCAACGGGTTATAGGCCCAGCCCAAGCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

561

Amino Acids

62.61

Weight (kDa)

9.31

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 508 - 535 3.6e-08 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 26
AccII CGCG 4 cut(s) 23, 400, 420, 1230
AccIII TCCGGA 2 cut(s) 1462, 1646
AclWI GGATC 6 cut(s) 572, 1067, 1339, 1454, 1605, 1657
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 2 cut(s) 335, 1391
AcuI CTGAAG 1 cut(s) 762
AcvI CACGTG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 917
AfaI GTAC 4 cut(s) 97, 391, 449, 857
AfiI CCNNNNNNNGG 2 cut(s) 522, 1631
AflIII ACRYGT 3 cut(s) 21, 545, 547
AgsI TTSAA 3 cut(s) 44, 1176, 1656
AjiI CACGTC 1 cut(s) 812
Alw26I GTCTC 5 cut(s) 12, 89, 795, 807, 1024
AlwI GGATC 6 cut(s) 572, 1067, 1339, 1454, 1605, 1657
AlwNI CAGNNNCTG 1 cut(s) 609
Aor13HI TCCGGA 2 cut(s) 1462, 1646
AoxI GGCC 4 cut(s) 91, 1048, 1494, 1667
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 335, 1391
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 1232
AspS9I GGNCC 3 cut(s) 685, 1622, 1668
AsuC2I CCSGG 3 cut(s) 503, 1501, 1632
AsuHPI GGTGA 5 cut(s) 339, 446, 674, 1083, 1323
AvaII GGWCC 2 cut(s) 685, 1622
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BanII GRGCYC 1 cut(s) 1523
BbrPI CACGTG 1 cut(s) 548
BbsI GAAGAC 2 cut(s) 148, 327
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 124
BccI CCATC 5 cut(s) 8, 113, 358, 1040, 1414
BceAI ACGGC 9 cut(s) 16, 78, 242, 546, 709, 747, 763, 784, 1354
BcgI CGANNNNNNTGC 2 cut(s) 1221, 1255
BciVI GTATCC 1 cut(s) 495
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 3 cut(s) 503, 1501, 1632
BcoDI GTCTC 5 cut(s) 12, 89, 795, 807, 1024
BfaI CTAG 1 cut(s) 1425
BfuI GTATCC 1 cut(s) 495
BglI GCCNNNNNGGC 1 cut(s) 37
BglII AGATCT 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 503, 1501, 1632
Bme18I GGWCC 2 cut(s) 685, 1622
BmgBI CACGTC 1 cut(s) 812
BmgT120I GGNCC 3 cut(s) 685, 1622, 1668
BmiI GGNNCC 3 cut(s) 500, 1069, 1624
BmrFI CCNGG 3 cut(s) 503, 1501, 1632
BmsI GCATC 2 cut(s) 1050, 1241
BpiI GAAGAC 2 cut(s) 148, 327
BplI GAGNNNNNCTC 2 cut(s) 1557, 1589
Bpu10I CCTNAGC 1 cut(s) 275
BpuMI CCSGG 3 cut(s) 503, 1501, 1632
Bsa29I ATCGAT 2 cut(s) 353, 1044
BsaAI YACGTR 2 cut(s) 548, 1312
BsaBI GATNNNNATC 3 cut(s) 576, 645, 1222
BsaHI GRCGYC 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 1129
BsaWI WCCGGW 3 cut(s) 1258, 1462, 1646
BsaXI ACNNNNNCTCC 2 cut(s) 1398, 1428
Bsc4I CCNNNNNNNGG 2 cut(s) 522, 1631
Bse118I RCCGGY 1 cut(s) 1381
Bse1I ACTGG 1 cut(s) 614
Bse8I GATNNNNATC 3 cut(s) 576, 645, 1222
BseAI TCCGGA 2 cut(s) 1462, 1646
BseCI ATCGAT 2 cut(s) 353, 1044
BseDI CCNNGG 1 cut(s) 1129
BseGI GGATG 4 cut(s) 1142, 1274, 1425, 1471
BseJI GATNNNNATC 3 cut(s) 576, 645, 1222
BseLI CCNNNNNNNGG 2 cut(s) 522, 1631
BseMII CTCAG 4 cut(s) 203, 289, 485, 699
BseNI ACTGG 1 cut(s) 614
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 2 cut(s) 222, 1670
Bsh1236I CGCG 4 cut(s) 23, 400, 420, 1230
BshFI GGCC 4 cut(s) 93, 1050, 1496, 1669
BshVI ATCGAT 2 cut(s) 353, 1044
BslI CCNNNNNNNGG 2 cut(s) 522, 1631
BsmAI GTCTC 5 cut(s) 12, 89, 795, 807, 1024
BsmBI CGTCTC 3 cut(s) 12, 795, 807
BsnI GGCC 4 cut(s) 93, 1050, 1496, 1669
Bsp1286I GDGCHC 1 cut(s) 1523
Bsp13I TCCGGA 2 cut(s) 1462, 1646
Bsp1407I TGTACA 1 cut(s) 447
BspANI GGCC 4 cut(s) 93, 1050, 1496, 1669
BspCNI CTCAG 4 cut(s) 202, 288, 486, 700
BspDI ATCGAT 2 cut(s) 353, 1044
BspEI TCCGGA 2 cut(s) 1462, 1646
BspFNI CGCG 4 cut(s) 23, 400, 420, 1230
BspHI TCATGA 1 cut(s) 1639
BspLI GGNNCC 3 cut(s) 500, 1069, 1624
BspPI GGATC 6 cut(s) 572, 1067, 1339, 1454, 1605, 1657
BspQI GCTCTTC 1 cut(s) 747
BsrFI RCCGGY 1 cut(s) 1381
BsrGI TGTACA 1 cut(s) 447
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 1 cut(s) 1381
BssECI CCNNGG 1 cut(s) 1129
BssNI GRCGYC 1 cut(s) 917
BssT1I CCWWGG 1 cut(s) 1129
Bst4CI ACNGT 5 cut(s) 386, 445, 525, 662, 940
Bst6I CTCTTC 4 cut(s) 747, 830, 873, 1067
BstACI GRCGYC 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 447
BstBAI YACGTR 2 cut(s) 548, 1312
BstC8I GCNNGC 3 cut(s) 831, 1293, 1383
BstDEI CTNAG 4 cut(s) 189, 275, 494, 708
BstF5I GGATG 4 cut(s) 1142, 1274, 1425, 1471
BstFNI CGCG 4 cut(s) 23, 400, 420, 1230
BstHHI GCGC 1 cut(s) 1232
BstMAI GTCTC 5 cut(s) 12, 89, 795, 807, 1024
BstSCI CCNGG 3 cut(s) 501, 1499, 1630
BstSNI TACGTA 1 cut(s) 1312
BstUI CGCG 4 cut(s) 23, 400, 420, 1230
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 2 cut(s) 148, 327
BstX2I RGATCY 4 cut(s) 490, 577, 1610, 1649
BstYI RGATCY 4 cut(s) 490, 577, 1610, 1649
Bsu15I ATCGAT 2 cut(s) 353, 1044
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 4 cut(s) 93, 1050, 1496, 1669
BsuTUI ATCGAT 2 cut(s) 353, 1044
BtgZI GCGATG 2 cut(s) 91, 1537
BtrI CACGTC 1 cut(s) 812
BtsCI GGATG 4 cut(s) 1142, 1274, 1425, 1471
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 391
Cac8I GCNNGC 3 cut(s) 831, 1293, 1383
CaiI CAGNNNCTG 1 cut(s) 609
CciI TCATGA 1 cut(s) 1639
CfoI GCGC 1 cut(s) 1232
Cfr10I RCCGGY 1 cut(s) 1381
Cfr13I GGNCC 3 cut(s) 685, 1622, 1668
ClaI ATCGAT 2 cut(s) 353, 1044
CseI GACGC 3 cut(s) 12, 29, 925
Csp6I GTAC 4 cut(s) 96, 390, 448, 856
CviAII CATG 2 cut(s) 614, 1640
CviQI GTAC 4 cut(s) 96, 390, 448, 856
DdeI CTNAG 4 cut(s) 189, 275, 494, 708
DraI TTTAAA 1 cut(s) 1375
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 4 cut(s) 747, 830, 873, 1067
EarI CTCTTC 4 cut(s) 747, 830, 873, 1067
EciI GGCGGA 7 cut(s) 59, 749, 765, 786, 795, 1278, 1356
Eco105I TACGTA 1 cut(s) 1312
Eco130I CCWWGG 1 cut(s) 1129
Eco24I GRGCYC 1 cut(s) 1523
Eco47I GGWCC 2 cut(s) 685, 1622
Eco57I CTGAAG 1 cut(s) 762
Eco72I CACGTG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 1622
EcoT14I CCWWGG 1 cut(s) 1129
EcoT38I GRGCYC 1 cut(s) 1523
ErhI CCWWGG 1 cut(s) 1129
Esp3I CGTCTC 3 cut(s) 12, 795, 807
FaeI CATG 2 cut(s) 617, 1643
FatI CATG 2 cut(s) 613, 1639
FauI CCCGC 1 cut(s) 1356
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 1 cut(s) 26
FokI GGATG 4 cut(s) 1129, 1261, 1432, 1478
FriOI GRGCYC 1 cut(s) 1523
FspBI CTAG 1 cut(s) 1425
GlaI GCGC 1 cut(s) 1231
GsaI CCCAGC 2 cut(s) 226, 1674
HaeIII GGCC 4 cut(s) 93, 1050, 1496, 1669
HgaI GACGC 3 cut(s) 12, 29, 925
HhaI GCGC 1 cut(s) 1232
Hin1I GRCGYC 1 cut(s) 917
Hin1II CATG 2 cut(s) 617, 1643
Hin6I GCGC 1 cut(s) 1230
HinP1I GCGC 1 cut(s) 1230
HinfI GANTC 9 cut(s) 299, 531, 922, 1223, 1265, 1328, 1560, 1572, 1643
HphI GGTGA 5 cut(s) 339, 446, 674, 1083, 1323
Hpy166II GTNNAC 4 cut(s) 27, 448, 626, 856
Hpy188III TCNNGA 7 cut(s) 340, 488, 1396, 1417, 1463, 1640, 1647
Hpy8I GTNNAC 4 cut(s) 27, 448, 626, 856
Hpy99I CGWCG 6 cut(s) 733, 913, 916, 919, 1451, 1529
HpyAV CCTTC 3 cut(s) 614, 668, 777
HpyCH4III ACNGT 5 cut(s) 386, 445, 525, 662, 940
HpyCH4IV ACGT 5 cut(s) 547, 811, 1311, 1413, 1527
HpyCH4V TGCA 2 cut(s) 80, 140
HpyF3I CTNAG 4 cut(s) 189, 275, 494, 708
HpySE526I ACGT 5 cut(s) 547, 811, 1311, 1413, 1527
Hsp92I GRCGYC 1 cut(s) 917
Hsp92II CATG 2 cut(s) 617, 1643
HspAI GCGC 1 cut(s) 1230
Kpn2I TCCGGA 2 cut(s) 1462, 1646
KroI GCCGGC 1 cut(s) 1381
KroNI GCCGGC 1 cut(s) 1383
Ksp22I TGATCA 1 cut(s) 436
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 7 cut(s) 504, 778, 980, 1073, 1251, 1261, 1448
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 1050, 1241
MaeI CTAG 1 cut(s) 1425
MaeII ACGT 5 cut(s) 547, 811, 1311, 1413, 1527
MaeIII GTNAC 6 cut(s) 329, 599, 689, 1005, 1300, 1427
MflI RGATCY 4 cut(s) 490, 577, 1610, 1649
MhlI GDGCHC 1 cut(s) 1523
MluCI AATT 5 cut(s) 335, 1171, 1391, 1577, 1615
MluI ACGCGT 1 cut(s) 21
MlyI GAGTC 1 cut(s) 1566
MmeI TCCRAC 2 cut(s) 223, 1470
MroI TCCGGA 2 cut(s) 1462, 1646
MroNI GCCGGC 1 cut(s) 1381
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 1374
MspA1I CMGCKG 2 cut(s) 137, 1481
MspR9I CCNGG 3 cut(s) 503, 1501, 1632
MvnI CGCG 4 cut(s) 23, 400, 420, 1230
NaeI GCCGGC 1 cut(s) 1383
NciI CCSGG 3 cut(s) 503, 1501, 1632
NgoMIV GCCGGC 1 cut(s) 1381
NlaIII CATG 2 cut(s) 617, 1643
NlaIV GGNNCC 3 cut(s) 500, 1069, 1624
NmuCI GTSAC 1 cut(s) 1427
PagI TCATGA 1 cut(s) 1639
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 3 cut(s) 370, 917, 1050
PdiI GCCGGC 1 cut(s) 1383
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 8 cut(s) 299, 531, 922, 1223, 1265, 1328, 1560, 1643
PfoI TCCNGGA 1 cut(s) 501
PleI GAGTC 1 cut(s) 1566
PmaCI CACGTG 1 cut(s) 548
PmlI CACGTG 1 cut(s) 548
PpsI GAGTC 1 cut(s) 1566
Ppu21I YACGTR 2 cut(s) 548, 1312
PpuMI RGGWCCY 1 cut(s) 1622
Psp5II RGGWCCY 1 cut(s) 1622
PspCI CACGTG 1 cut(s) 548
PspFI CCCAGC 2 cut(s) 222, 1670
PspN4I GGNNCC 3 cut(s) 500, 1069, 1624
PspPI GGNCC 3 cut(s) 685, 1622, 1668
PspPPI RGGWCCY 1 cut(s) 1622
PsrI GAACNNNNNNTAC 2 cut(s) 682, 714
PstNI CAGNNNCTG 1 cut(s) 609
PsuI RGATCY 4 cut(s) 490, 577, 1610, 1649
PvuII CAGCTG 2 cut(s) 137, 1481
RsaI GTAC 4 cut(s) 97, 391, 449, 857
RsaNI GTAC 4 cut(s) 96, 390, 448, 856
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 1 cut(s) 1374
Sau96I GGNCC 3 cut(s) 685, 1622, 1668
SchI GAGTC 1 cut(s) 1566
ScrFI CCNGG 3 cut(s) 503, 1501, 1632
SduI GDGCHC 1 cut(s) 1523
SfaNI GCATC 2 cut(s) 1050, 1241
SinI GGWCC 2 cut(s) 685, 1622
SnaBI TACGTA 1 cut(s) 1312
Sse9I AATT 5 cut(s) 335, 1171, 1391, 1577, 1615
SspI AATATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 1425
StyD4I CCNGG 3 cut(s) 501, 1499, 1630
StyI CCWWGG 1 cut(s) 1129
TaaI ACNGT 5 cut(s) 386, 445, 525, 662, 940
TaiI ACGT 5 cut(s) 550, 814, 1314, 1416, 1530
TaqI TCGA 6 cut(s) 341, 353, 364, 1044, 1053, 1241
TasI AATT 5 cut(s) 335, 1171, 1391, 1577, 1615
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 8 cut(s) 299, 531, 922, 1223, 1265, 1328, 1560, 1643
Tru1I TTAA 1 cut(s) 1374
Tru9I TTAA 1 cut(s) 1374
TscAI CASTG 2 cut(s) 82, 391
TseFI GTSAC 1 cut(s) 1427
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 1427
TspDTI ATGAA 8 cut(s) 148, 534, 582, 1236, 1540, 1604, 1628, 1656
TspGWI ACGGA 6 cut(s) 203, 677, 777, 1024, 1228, 1285
TspRI CASTG 2 cut(s) 82, 391
VpaK11BI GGWCC 2 cut(s) 685, 1622
XapI RAATTY 2 cut(s) 335, 1391
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.