Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009631

Physical Location & Seq

Genomic Coordinates Reverse (-)

74764729 .. 74765195

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAACAAGAACCCAGAATTTCTCATGGAATTAAGAAGACGAAGATATGTCTCCACCTTTCTGGCTCCGGCAGCAACCCAACACTCCCCGCCGCCGCCTCCGCCGCTCTACCTCCTCTCCTCTTCAGCTCCGGCACCTTCATCCTCCTCCTCCTCGCTACCCAACATGGTGAAGAAGAGCTGGGACTCCCTCAACTTTGTCCTTGTCCTCTTCGCCATTGTCTGCGGCTTTCTCGGCAGAAACACCGTCGGTAACGACGACGACGGCGATGGCAGCGGCGTTCCGGGTACTGCTGCTGCTCAGCCCCAAGAGGTGGTCAAATCAATCCCGTCCACGCCGCGTCAGTGGTACGAGTATTCAGATCCAATCGCCTGCGAAATCGGCGGCGTTGCAGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

DUF761

Protein Analysis

134

Amino Acids

14.19

Weight (kDa)

5.71

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72790
fragaria_vesca	FvH4_6g34220
malus_domestica	MD09G1187300.v1.1 MD17G1172100.v1.1
prunus_persica	Prupe.3G044600_v2.0.a1
pyrus_communis	pycom09g10390 pycom17g16930 pycom17g16940
rosa_chinensis	RchiOBHm_Chr2g0144551
rosa_laevigata	RLG00000014981 RLG00000020088 RLG00000036003
rosa_multiflora	Rmu_sc0005789.1_g000003 Rmu_sc0029105.1_g000001 Rmu_sc0029106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101210
rosa_rugosa	Rorug02G0387800
rosa_samantha	Rh2AG439800 Rh2BG449800 Rh2CG426800 Rh2DG459700
rosa_wichuraiana	Rw2G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	1 cut(s)	340
AciI	CCGC	9 cut(s)	89, 92, 95, 101, 104, 225, 276, 338, 384
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	289, 350
AfiI	CCNNNNNNNGG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	128, 180
AluI	AGCT	2 cut(s)	128, 180
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	71, 273, 293, 296
ApoI	RAATTY	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	83, 280, 283, 285
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	55
BlpI	GCTNAGC	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	66, 135
BmrFI	CCNGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	5 cut(s)	104, 109, 136, 139, 142
BseXI	GCAGC	4 cut(s)	83, 280, 283, 285
BseYI	CCCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	68, 131, 284
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	9 cut(s)	89, 92, 95, 101, 104, 225, 276, 338, 384
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	66, 135
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	106
BssMI	GATC	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	3 cut(s)	127, 170, 215
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 100, 103, 234, 273, 381
BstSCI	CCNGG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	4 cut(s)	83, 280, 283, 285
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	373
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	288, 349
CviAII	CATG	2 cut(s)	25, 166
CviJI	RGCY	5 cut(s)	65, 128, 180, 228, 304
CviKI_1	RGCY	5 cut(s)	65, 128, 180, 228, 304
CviQI	GTAC	2 cut(s)	288, 349
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	3 cut(s)	127, 170, 215
EarI	CTCTTC	3 cut(s)	127, 170, 215
EciI	GGCGGA	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	108
FaeI	CATG	2 cut(s)	28, 169
FaiI	YATR	4 cut(s)	26, 48, 167, 400
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	24, 165
FauI	CCCGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	184
HapII	CCGG	3 cut(s)	68, 131, 284
HgaI	GACGC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	28, 169
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	3 cut(s)	68, 131, 284
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	4 cut(s)	251, 260, 263, 266
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 100, 103, 234, 273, 381
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	28, 169
Kzo9I	GATC	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	70, 133
LpnPI	CCDG	8 cut(s)	27, 47, 81, 144, 166, 297, 378, 385
Lsp1109I	GCAGC	4 cut(s)	83, 280, 283, 285
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	363
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	1 cut(s)	361
MboII	GAAGA	6 cut(s)	48, 54, 114, 184, 187, 202
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	2 cut(s)	17, 29
MlyI	GAGTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	3 cut(s)	68, 131, 284
MspR9I	CCNGG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	6 cut(s)	71, 100, 103, 234, 273, 381
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	28, 169
NlaIV	GGNNCC	2 cut(s)	66, 135
NmeAIII	GCCGAG	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 264
PflMI	CCANNNNNTGG	1 cut(s)	313
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	66, 135
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	2 cut(s)	289, 350
RsaNI	GTAC	2 cut(s)	288, 349
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	6 cut(s)	59, 114, 130, 139, 182, 315
Sse9I	AATT	2 cut(s)	17, 29
SsiI	CCGC	9 cut(s)	89, 92, 95, 101, 104, 225, 276, 338, 384
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	2 cut(s)	17, 29
TauI	GCSGC	7 cut(s)	94, 97, 106, 228, 279, 340, 387
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	4 cut(s)	71, 273, 293, 296
TspDTI	ATGAA	2 cut(s)	17, 129
TspRI	CASTG	1 cut(s)	350
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.