pycom17g16930

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0009631
Physical Location & Seq
Reverse (-)
14870366 .. 14871190
825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16930.1

Sequence Viewer

Length: 825 bp
ATGTCGAAGGAGGTTGAGAACAAGAAAACGCCAGCTGGGAAACATGCGAAGAAGAAGGGAGTTGCTACCACTAAAGAGTTCTTGATCACGTCATTAAGGAAGAGTCGGAAGAAGCAGAGACAAAAGAGTGTCGAAAATTTCGAGACTCTCCTCGCTTCTGCCTCTTCGGTTCCTTCGTCTGCACTTCCGCCGCCCTCACCGCCGCCTCCTCCCCCACCGCTACCACCACCTTCGGTTTTTCCCAACTTGTTTTCTTCAAAGAAATCCAACAAACCCAAGAAAACTATTCACCCAATTCCACAGCCGCCGTCGCCACCACCGCTGCCACGGATCAATTCCACCGGGAGATTATCCCAAATCAGGCCCACGATGACAACCCAAAAGCCGCTACCTCCAGTTAAGGTGACCAGCTTCATCAACAGAGATGATGAGAATGCGAACAGTGGCGGGGAGTCGCCATCGGTTGGAATACCGCCGCCGCCGCCGCTACCGCCATTTAGTATACCGGTTACGAAATACGCAGAGCATGGGGACTTTGTGAGGATCAAAAGCAACGACAGTTCACTCAGCGGCTCACCTGATTTGGACGACAGTGATCAGGATTCAGTTCCATCACCGACCATGGAAGCGGGTAGTAAAACTCCATCGGAGAGCGGAGAGTCGCCGACAAAAGCTATGTTCTGTCCGAGCCCGGATGTGAACACCAAAGCTGACACCTTCATTGCAAGGTTCAGAGCTAGTTTGAAGTTGGAGAAGATGAACTCTGCGAGGGGAAGGTCCAATCTAGGCCCACATTCCAGTGAAGAAGATGTCACGGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

275

Amino Acids

29.4

Weight (kDa)

9.71

Isoelectric Point (pI)

65.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 231 - 257 9.1e-08 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AccBSI CCGCTC 1 cut(s) 654
AccI GTMKAC 1 cut(s) 502
AclWI GGATC 2 cut(s) 338, 551
AcsI RAATTY 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 360, 464
AgeI ACCGGT 1 cut(s) 505
AgsI TTSAA 2 cut(s) 258, 745
AjiI CACGTC 1 cut(s) 90
AluBI AGCT 5 cut(s) 35, 411, 674, 710, 737
AluI AGCT 5 cut(s) 35, 411, 674, 710, 737
Alw26I GTCTC 2 cut(s) 112, 137
AlwI GGATC 2 cut(s) 338, 551
AoxI GGCC 2 cut(s) 362, 787
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 136
AsiGI ACCGGT 1 cut(s) 505
AspS9I GGNCC 3 cut(s) 363, 777, 788
AsuC2I CCSGG 2 cut(s) 343, 692
AsuHPI GGTGA 5 cut(s) 189, 281, 415, 567, 606
AvaII GGWCC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 692
BbvI GCAGC 1 cut(s) 309
BccI CCATC 3 cut(s) 466, 619, 652
BceAI ACGGC 1 cut(s) 292
BclI TGATCA 2 cut(s) 84, 595
BcnI CCSGG 2 cut(s) 343, 692
BcoDI GTCTC 2 cut(s) 112, 137
BfaI CTAG 2 cut(s) 738, 785
Bme1390I CCNGG 2 cut(s) 343, 692
Bme18I GGWCC 1 cut(s) 777
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 363, 777, 788
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 2 cut(s) 343, 692
BpmI CTGGAG 1 cut(s) 378
BpuMI CCSGG 2 cut(s) 343, 692
BsaJI CCNNGG 2 cut(s) 326, 621
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 464
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 2 cut(s) 395, 798
Bse3DI GCAATG 1 cut(s) 720
BseDI CCNNGG 2 cut(s) 326, 621
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 2 cut(s) 360, 464
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 1 cut(s) 580
BseNI ACTGG 2 cut(s) 395, 798
BseRI GAGGAG 2 cut(s) 140, 198
BseXI GCAGC 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 2 cut(s) 364, 789
BshTI ACCGGT 1 cut(s) 505
BsiSI CCGG 3 cut(s) 342, 506, 692
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 360, 464
BsmAI GTCTC 2 cut(s) 112, 137
BsmFI GGGAC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 364, 789
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 4 cut(s) 84, 330, 543, 595
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 2 cut(s) 364, 789
BspCNI CTCAG 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 2 cut(s) 338, 551
BsrBI CCGCTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 720
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 2 cut(s) 395, 798
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 2 cut(s) 326, 621
BssMI GATC 4 cut(s) 84, 330, 543, 595
BssNAI GTATAC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 621
Bst1107I GTATAC 1 cut(s) 503
Bst4CI ACNGT 3 cut(s) 443, 560, 593
Bst6I CTCTTC 2 cut(s) 95, 169
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 566
BstDSI CCRYGG 2 cut(s) 326, 621
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 1 cut(s) 700
BstKTI GATC 4 cut(s) 87, 333, 546, 598
BstMAI GTCTC 2 cut(s) 112, 137
BstMBI GATC 4 cut(s) 84, 330, 543, 595
BstMWI GCNNNNNNNGC 6 cut(s) 199, 310, 319, 481, 484, 490
BstNSI RCATGY 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 2 cut(s) 341, 690
BstV1I GCAGC 1 cut(s) 309
BstZ17I GTATAC 1 cut(s) 503
BsuRI GGCC 2 cut(s) 364, 789
BtgI CCRYGG 2 cut(s) 326, 621
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 3 cut(s) 448, 598, 805
Cac8I GCNNGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 3 cut(s) 363, 777, 788
CspAI ACCGGT 1 cut(s) 505
CviAII CATG 3 cut(s) 44, 527, 622
DdeI CTNAG 1 cut(s) 566
DpnI GATC 4 cut(s) 86, 332, 545, 597
DpnII GATC 4 cut(s) 84, 330, 543, 595
Eam1104I CTCTTC 2 cut(s) 95, 169
EarI CTCTTC 2 cut(s) 95, 169
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 692
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 777
Eco91I GGTNACC 1 cut(s) 403
EcoO65I GGTNACC 1 cut(s) 403
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 3 cut(s) 47, 530, 625
FaiI YATR 5 cut(s) 45, 503, 528, 623, 677
FaqI GGGAC 1 cut(s) 545
FatI CATG 3 cut(s) 43, 526, 621
FauI CCCGC 2 cut(s) 440, 622
FbaI TGATCA 2 cut(s) 84, 595
FblI GTMKAC 1 cut(s) 502
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 1 cut(s) 692
FspBI CTAG 2 cut(s) 738, 785
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 2 cut(s) 364, 789
HapII CCGG 3 cut(s) 342, 506, 692
Hin1II CATG 3 cut(s) 47, 530, 625
HinfI GANTC 5 cut(s) 103, 145, 452, 602, 659
HpaII CCGG 3 cut(s) 342, 506, 692
HphI GGTGA 5 cut(s) 189, 281, 415, 567, 606
Hpy166II GTNNAC 3 cut(s) 503, 563, 700
Hpy188I TCNGA 4 cut(s) 108, 649, 687, 734
Hpy188III TCNNGA 3 cut(s) 82, 142, 599
Hpy8I GTNNAC 3 cut(s) 503, 563, 700
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 5 cut(s) 49, 183, 240, 727, 768
HpyCH4III ACNGT 3 cut(s) 443, 560, 593
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 182, 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 199, 310, 319, 481, 484, 490
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 3 cut(s) 47, 530, 625
Ksp22I TGATCA 2 cut(s) 84, 595
Kzo9I GATC 4 cut(s) 84, 330, 543, 595
Lsp1109I GCAGC 1 cut(s) 309
MaeI CTAG 2 cut(s) 738, 785
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 3 cut(s) 403, 508, 811
MalI GATC 4 cut(s) 86, 332, 545, 597
MbiI CCGCTC 1 cut(s) 654
MboI GATC 4 cut(s) 84, 330, 543, 595
MboII GAAGA 9 cut(s) 61, 64, 112, 121, 156, 246, 766, 815, 818
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 3 cut(s) 136, 294, 334
MlyI GAGTC 4 cut(s) 112, 139, 461, 668
MmeI TCCRAC 4 cut(s) 86, 291, 445, 729
MnlI CCTC 9 cut(s) 4, 161, 172, 205, 216, 219, 402, 534, 762
MseI TTAA 2 cut(s) 95, 399
MslI CAYNNNNRTG 1 cut(s) 798
MspA1I CMGCKG 3 cut(s) 35, 322, 570
MspI CCGG 3 cut(s) 342, 506, 692
MspR9I CCNGG 2 cut(s) 343, 692
Mva1269I GAATGC 1 cut(s) 439
MwoI GCNNNNNNNGC 6 cut(s) 199, 310, 319, 481, 484, 490
NciI CCSGG 2 cut(s) 343, 692
NcoI CCATGG 1 cut(s) 621
NdeII GATC 4 cut(s) 84, 330, 543, 595
NlaIII CATG 3 cut(s) 47, 530, 625
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 2 cut(s) 403, 811
NspI RCATGY 1 cut(s) 47
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 173
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 602
PflMI CCANNNNNTGG 1 cut(s) 464
PinAI ACCGGT 1 cut(s) 505
PleI GAGTC 4 cut(s) 111, 139, 460, 667
PpsI GAGTC 4 cut(s) 111, 139, 460, 667
PspEI GGTNACC 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 3 cut(s) 363, 777, 788
PvuII CAGCTG 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 798
SaqAI TTAA 2 cut(s) 95, 399
Sau3AI GATC 4 cut(s) 84, 330, 543, 595
Sau96I GGNCC 3 cut(s) 363, 777, 788
SchI GAGTC 4 cut(s) 112, 139, 461, 668
ScrFI CCNGG 2 cut(s) 343, 692
SduI GDGCHC 1 cut(s) 692
SinI GGWCC 1 cut(s) 777
SmiMI CAYNNNNRTG 1 cut(s) 798
Sse9I AATT 3 cut(s) 136, 294, 334
SspMI CTAG 2 cut(s) 738, 785
StyD4I CCNGG 2 cut(s) 341, 690
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 443, 560, 593
TaiI ACGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 5, 132, 141
TasI AATT 3 cut(s) 136, 294, 334
TauI GCSGC 9 cut(s) 193, 205, 307, 388, 478, 481, 484, 487, 573
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 2 cut(s) 95, 399
Tru9I TTAA 2 cut(s) 95, 399
TscAI CASTG 3 cut(s) 448, 598, 805
TseFI GTSAC 2 cut(s) 403, 811
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 2 cut(s) 403, 811
TspDTI ATGAA 3 cut(s) 403, 709, 773
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 3 cut(s) 448, 598, 805
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 777
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 2 cut(s) 738, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.