Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029106.1

Orthogroup ID

OG0009631

Physical Location & Seq

Genomic Coordinates Forward (+)

879 .. 1390

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

atggaagaagacgaagataatttgtctccacctttctggctccggcagcaacccaacactccccggcgccgcctccgccgctccacctcctccctcctcttcagctccggcgccttcatcctcctcctcctcgccgtagctcttgccttcatatttatcatagtcccatctgtgcattcctttacttctcagatattcagacccaacatggtgaagaagagctgggactccctcaactttgtcctcgtcctctttgccattgtctgcggcttcctcggcagaaacaccgccggtaacgacgacgacggcgatggcagcggcgttccggctactgctgctgctgctcagccgcaagaggtggtcaaatcaatcccgtccacgccgcgtcagtggtacgagtattcagatccgacggtgtacaatgatcgtgctgttaacagagtgggctccatgagaagcagcagctcgtaccctgatctccgacaagactccgaatggatcgccagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

DUF761

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

5.83

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72790
fragaria_vesca	FvH4_6g34220
malus_domestica	MD09G1187300.v1.1 MD17G1172100.v1.1
prunus_persica	Prupe.3G044600_v2.0.a1
pyrus_communis	pycom09g10390 pycom17g16930 pycom17g16940
rosa_chinensis	RchiOBHm_Chr2g0144551
rosa_laevigata	RLG00000014981 RLG00000020088 RLG00000036003
rosa_multiflora	Rmu_sc0005789.1_g000003 Rmu_sc0029105.1_g000001 Rmu_sc0029106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101210
rosa_rugosa	Rorug02G0387800
rosa_samantha	Rh2AG439800 Rh2BG449800 Rh2CG426800 Rh2DG459700
rosa_wichuraiana	Rw2G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	66, 110
AccBSI	CCGCTC	1 cut(s)	81
AccII	CGCG	1 cut(s)	385
AciI	CCGC	8 cut(s)	70, 76, 79, 267, 288, 318, 350, 383
AclWI	GGATC	2 cut(s)	401, 506
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	2 cut(s)	67, 111
AfaI	GTAC	3 cut(s)	395, 419, 470
AluBI	AGCT	4 cut(s)	105, 140, 222, 465
AluI	AGCT	4 cut(s)	105, 140, 222, 465
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	401, 506
ApeKI	GCWGC	7 cut(s)	46, 315, 335, 338, 341, 459, 462
AspLEI	GCGC	2 cut(s)	69, 113
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	66, 110
BanII	GRGCYC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	7 cut(s)	58, 322, 325, 327, 328, 471, 474
BccI	CCATC	2 cut(s)	175, 305
BceAI	ACGGC	2 cut(s)	119, 322
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	30
BfoI	RGCGCY	2 cut(s)	70, 114
BlpI	GCTNAGC	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	4 cut(s)	41, 68, 112, 448
BmrFI	CCNGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	67, 111
BsaJI	CCNNGG	2 cut(s)	62, 274
Bse118I	RCCGGY	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	62, 274
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	203, 359
BseRI	GAGGAG	5 cut(s)	79, 86, 113, 116, 119
BseXI	GCAGC	7 cut(s)	58, 322, 325, 327, 328, 471, 474
BseYI	CCCAGC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	385
BshNI	GGYRCC	2 cut(s)	66, 110
BsiSI	CCGG	5 cut(s)	43, 64, 108, 291, 326
BslFI	GGGAC	2 cut(s)	149, 239
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	149, 239
BsmI	GAATGC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	406, 424, 475, 498
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	8 cut(s)	70, 76, 79, 267, 288, 318, 350, 383
BspCNI	CTCAG	2 cut(s)	202, 358
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	4 cut(s)	41, 68, 112, 448
BspPI	GGATC	2 cut(s)	401, 506
BspQI	GCTCTTC	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	66, 110
BsrBI	CCGCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	62, 274
BssMI	GATC	4 cut(s)	406, 424, 475, 498
BssNI	GRCGYC	2 cut(s)	67, 111
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	104, 212
BstACI	GRCGYC	2 cut(s)	67, 111
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	189, 345
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	385
BstH2I	RGCGCY	2 cut(s)	70, 114
BstHHI	GCGC	2 cut(s)	69, 113
BstKTI	GATC	4 cut(s)	409, 427, 478, 501
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	4 cut(s)	406, 424, 475, 498
BstMWI	GCNNNNNNNGC	7 cut(s)	46, 75, 78, 276, 315, 335, 341
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	7 cut(s)	58, 322, 325, 327, 328, 471, 474
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	395
CfoI	GCGC	2 cut(s)	69, 113
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	394, 418, 469
CviAII	CATG	2 cut(s)	208, 451
CviJI	RGCY	9 cut(s)	40, 105, 140, 222, 270, 329, 349, 447, 465
CviKI_1	RGCY	9 cut(s)	40, 105, 140, 222, 270, 329, 349, 447, 465
CviQI	GTAC	3 cut(s)	394, 418, 469
DdeI	CTNAG	2 cut(s)	189, 345
DinI	GGCGCC	2 cut(s)	68, 112
DpnI	GATC	4 cut(s)	408, 426, 477, 500
DpnII	GATC	4 cut(s)	406, 424, 475, 498
Eam1104I	CTCTTC	2 cut(s)	104, 212
EarI	CTCTTC	2 cut(s)	104, 212
EciI	GGCGGA	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	449
EgeI	GGCGCC	2 cut(s)	68, 112
EheI	GGCGCC	2 cut(s)	68, 112
FaeI	CATG	2 cut(s)	211, 454
FaiI	YATR	4 cut(s)	152, 161, 209, 452
FaqI	GGGAC	2 cut(s)	149, 239
FatI	CATG	2 cut(s)	207, 450
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	449
GlaI	GCGC	2 cut(s)	68, 112
GsaI	CCCAGC	1 cut(s)	226
HaeII	RGCGCY	2 cut(s)	70, 114
HapII	CCGG	5 cut(s)	43, 64, 108, 291, 326
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	69, 113
Hin1I	GRCGYC	2 cut(s)	67, 111
Hin1II	CATG	2 cut(s)	211, 454
Hin6I	GCGC	2 cut(s)	67, 111
HinP1I	GCGC	2 cut(s)	67, 111
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	227, 488
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	5 cut(s)	43, 64, 108, 291, 326
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	378, 418, 436
Hpy188I	TCNGA	6 cut(s)	192, 200, 406, 411, 482, 493
Hpy8I	GTNNAC	3 cut(s)	378, 418, 436
Hpy99I	CGWCG	4 cut(s)	302, 305, 308, 415
HpyAV	CCTTC	2 cut(s)	124, 157
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	7 cut(s)	46, 75, 78, 276, 315, 335, 341
HpyF3I	CTNAG	2 cut(s)	189, 345
Hsp92I	GRCGYC	2 cut(s)	67, 111
Hsp92II	CATG	2 cut(s)	211, 454
HspAI	GCGC	2 cut(s)	67, 111
KasI	GGCGCC	2 cut(s)	66, 110
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	406, 424, 475, 498
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	4 cut(s)	45, 86, 110, 452
LpnPI	CCDG	8 cut(s)	22, 56, 77, 121, 208, 304, 339, 486
Lsp1109I	GCAGC	7 cut(s)	58, 322, 325, 327, 328, 471, 474
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	408, 426, 477, 500
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	4 cut(s)	406, 424, 475, 498
MboII	GAAGA	6 cut(s)	17, 20, 26, 91, 226, 229
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	1 cut(s)	19
Mly113I	GGCGCC	2 cut(s)	67, 111
MlyI	GAGTC	2 cut(s)	221, 482
MmeI	TCCRAC	2 cut(s)	434, 505
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	5 cut(s)	43, 64, 108, 291, 326
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	7 cut(s)	46, 75, 78, 276, 315, 335, 341
NarI	GGCGCC	2 cut(s)	67, 111
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	4 cut(s)	406, 424, 475, 498
NlaIII	CATG	2 cut(s)	211, 454
NlaIV	GGNNCC	4 cut(s)	41, 68, 112, 448
NmeAIII	GCCGAG	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	175
PleI	GAGTC	2 cut(s)	221, 482
PluTI	GGCGCC	2 cut(s)	70, 114
PpsI	GAGTC	2 cut(s)	221, 482
PspFI	CCCAGC	1 cut(s)	222
PspN4I	GGNNCC	4 cut(s)	41, 68, 112, 448
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	3 cut(s)	395, 419, 470
RsaNI	GTAC	3 cut(s)	394, 418, 469
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	4 cut(s)	406, 424, 475, 498
SchI	GAGTC	2 cut(s)	221, 482
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	7 cut(s)	34, 89, 107, 142, 224, 360, 467
SfoI	GGCGCC	2 cut(s)	68, 112
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	8 cut(s)	70, 76, 79, 267, 288, 318, 350, 383
SspDI	GGCGCC	2 cut(s)	66, 110
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	415
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	6 cut(s)	72, 81, 270, 321, 352, 385
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	7 cut(s)	46, 315, 335, 338, 341, 459, 462
TspDTI	ATGAA	2 cut(s)	106, 139
TspRI	CASTG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.