MD17G1172100.v1.1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0009631
Physical Location & Seq
Reverse (-)
17690379 .. 17692462
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1172100.v1.1.491

Sequence Viewer

Length: 1770 bp
ATGGAAGAAGAGGAAAACATGTCGCCACCGTTTTGGCTCCAAGCCTCCAATTCTTTCCGGCAGTCCAACCATCGCAGCAGCCGCCTCGGCCGCTCTGCCTCCTCCGTTTTTTTCAGCTCCGGTGCCTTCGTTTTCGCCTTGATCGTCATAGCTCTGAAATTTGAGAAGTCAAACCCATCAACCCCACGTCAGTGGTACGATCAGTATTCAGATCGGAGTCGGACGGTCGATAATCAGAGCAGTGGTGCTACTAGCACGATGGACAGAGGAGTGAGGACCAGCAGCTCGTACCCGGATCTGCGTCAACAGGAACCTTCATGGAATGTGGTTAGGGACGAACGGTGGCGATCCCACGACGATACCCATGTGGCCGGTTATCGGATTCCGGATTCGGATCCGCAGCATCAGCTCCACCGCCGTCACCGGTCGTGGCATGAAGAACCGGCAGAGGTTGTAGCACAAGAAGAACCGGCAGAGGTTCTAGCACAGGAAGAACCGGCAGAGGTTCTAGCACAGGAAGAACCGGCAGAGGTTCAAGCACGAGTAGGATGTGTACTACGGACCAAGAATATACCAGTAAACACTTTTGTGATCCCTGCGGAGCAAGTTAGTTCTTCACACGCACAGATTCAGGTTATTCAACCCGATCCTCTTAGTTCTTCACACGCACAGATTCAGGTTATTCAATCCGATCCTCTTAGTTCTTCACACGCACAGATTCAGGTTATTCAATCCTATTCTCCGCCACCATCGCCGCCGAGGACAAAATCTCCGCCACCTCCGCCGCCGCCGCGCAAGACAAAGAGGACGTACCAAGCTATTGGAGAAAAAGAAAACTCGAATGCTAGCGACAATTTGGAAGTGGAGAATAATTTGCCCCCACCGCCTCTCCAAGCCCCGCCTTCTCCGCTGTTAGCTCCGCCATCATCGCCACCGCAGATGTCGAAGGAGGTTGAGAACAAGAAAACGCCAGCTGGGAAACATGCGAAGAAGAAGGGAGTTGCTACCACTAAAGAGTTCTTGATCACGTCATTAAGGAGGAGTAGGAAGAAGCAGAGACAAAAGAGTGTCGAAAATTTCGAGACTCTCCTCGCTTCTGCCTCTTCGGCTCCTTCGTCTTTACTTCCGCCGCCCTCACCGCCGCCTCCTCCCCCACCGCTACCACCACCTTCGGTTTTTCACAACTTGTTTTCTTCAAAGAAATCCAACAAACCCAAGAAAACTATTCACCCAATTCCACAACCGCCGTCGCCACCACCGCTGCCACGGATCAATTCCACAGGGAGATTATCCCAAATCAGGCCCACGATGACAACCCAAAAGCCGCTCCCTCCAGTTAAGGTGACCAGTTTCATCAACAGAGATGATGAGAATGCGAACAGTGGCGGGGAGTCGCCATCGGTTGGAATACCGCCGCCGCCGCCGCCGCCGCTACCGCCATTTAGTATACCGGTTATGAAATACGCAGAGCATGGGGACTTTGTGAGGATCAAAAGCAACGACAGTTCACGCAGCGGCTCACCTGATTTGGACGACAGTGATCAGGATTCAGTTCCATCACCGACCATGGAAGCTGGTAGTAAAACTCCATCGGAGAGCGGAGAGTCGCCGACAAAAGCTATGTTCTGTCCGAGCCCGGATGTGAACACCAAAGCTGACACCTTCATTGCAAGGTTCAGAGCTGGTTTGAAGTTGGAGAAGATGAACTCTGTAAGGGGAAGGTCCAATCTAGGCCCACATTCAAGTGAGGAAGATGTCACGGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

590

Amino Acids

64.66

Weight (kDa)

8.79

Isoelectric Point (pI)

79.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 546 - 571 9.7e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 1403
AccBSI CCGCTC 3 cut(s) 93, 1327, 1599
AccI GTMKAC 1 cut(s) 1447
AccII CGCG 1 cut(s) 793
AccIII TCCGGA 1 cut(s) 385
AclWI GGATC 9 cut(s) 303, 342, 389, 402, 586, 641, 686, 1277, 1496
AcoI YGGCCR 2 cut(s) 88, 369
AcsI RAATTY 2 cut(s) 158, 1075
AfaI GTAC 4 cut(s) 197, 290, 555, 812
AfiI CCNNNNNNNGG 3 cut(s) 378, 1299, 1403
AflIII ACRYGT 1 cut(s) 18
AgeI ACCGGT 2 cut(s) 423, 1450
AgsI TTSAA 7 cut(s) 536, 641, 686, 731, 1197, 1690, 1743
AjiI CACGTC 2 cut(s) 188, 1029
AleI CACNNNNGTG 2 cut(s) 190, 587
Alw26I GTCTC 2 cut(s) 1051, 1076
AlwI GGATC 9 cut(s) 303, 342, 389, 402, 586, 641, 686, 1277, 1496
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 4 cut(s) 88, 369, 1301, 1732
ApeKI GCWGC 6 cut(s) 75, 78, 282, 400, 1261, 1512
ApoI RAATTY 2 cut(s) 158, 1075
AsiGI ACCGGT 2 cut(s) 423, 1450
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 5 cut(s) 276, 561, 1302, 1722, 1733
AsuC2I CCSGG 2 cut(s) 293, 1637
AsuHPI GGTGA 6 cut(s) 413, 1128, 1220, 1354, 1512, 1551
AsuNHI GCTAGC 1 cut(s) 845
AvaII GGWCC 3 cut(s) 276, 561, 1722
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BamHI GGATCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 1637
BauI CACGAG 1 cut(s) 540
BbvI GCAGC 6 cut(s) 87, 90, 294, 412, 1248, 1524
BccI CCATC 8 cut(s) 78, 184, 253, 757, 931, 1405, 1564, 1597
BceAI ACGGC 2 cut(s) 402, 1231
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BclI TGATCA 2 cut(s) 1023, 1540
BcnI CCSGG 2 cut(s) 293, 1637
BcoDI GTCTC 2 cut(s) 1051, 1076
BfaI CTAG 5 cut(s) 252, 482, 509, 846, 1730
BglI GCCNNNNNGGC 2 cut(s) 87, 1106
Bme1390I CCNGG 2 cut(s) 293, 1637
Bme18I GGWCC 3 cut(s) 276, 561, 1722
BmgBI CACGTC 2 cut(s) 188, 1029
BmgT120I GGNCC 5 cut(s) 276, 561, 1302, 1722, 1733
BmiI GGNNCC 5 cut(s) 38, 124, 312, 396, 1110
BmrFI CCNGG 2 cut(s) 293, 1637
BmsI GCATC 1 cut(s) 412
BmtI GCTAGC 1 cut(s) 849
BpmI CTGGAG 1 cut(s) 1317
BpuMI CCSGG 2 cut(s) 293, 1637
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 4 cut(s) 85, 758, 1265, 1566
BsaWI WCCGGW 4 cut(s) 119, 385, 423, 1450
BsaXI ACNNNNNCTCC 4 cut(s) 754, 784, 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 1299, 1403
Bse118I RCCGGY 7 cut(s) 371, 423, 442, 469, 496, 523, 1450
Bse1I ACTGG 3 cut(s) 575, 1334, 1347
Bse3DI GCAATG 1 cut(s) 1665
Bse8I GATNNNNATC 1 cut(s) 393
BseAI TCCGGA 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 85, 758, 1265, 1566
BseGI GGATG 2 cut(s) 554, 1645
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 3 cut(s) 378, 1299, 1403
BseMI GCAATG 1 cut(s) 1665
BseNI ACTGG 3 cut(s) 575, 1334, 1347
BseRI GAGGAG 5 cut(s) 91, 282, 1054, 1079, 1137
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 6 cut(s) 87, 90, 294, 412, 1248, 1524
BseYI CCCAGC 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 793
Bsh1285I CGRYCG 3 cut(s) 91, 228, 428
BshFI GGCC 4 cut(s) 90, 371, 1303, 1734
BshNI GGYRCC 1 cut(s) 122
BshTI ACCGGT 2 cut(s) 423, 1450
BsiEI CGRYCG 3 cut(s) 91, 228, 428
BslFI GGGAC 2 cut(s) 347, 1490
BslI CCNNNNNNNGG 3 cut(s) 378, 1299, 1403
BsmAI GTCTC 2 cut(s) 1051, 1076
BsmFI GGGAC 2 cut(s) 347, 1490
BsmI GAATGC 2 cut(s) 847, 1378
BsnI GGCC 4 cut(s) 90, 371, 1303, 1734
Bsp1286I GDGCHC 1 cut(s) 1637
Bsp13I TCCGGA 1 cut(s) 385
Bsp19I CCATGG 1 cut(s) 1566
BspANI GGCC 4 cut(s) 90, 371, 1303, 1734
BspEI TCCGGA 1 cut(s) 385
BspFNI CGCG 1 cut(s) 793
BspLI GGNNCC 5 cut(s) 38, 124, 312, 396, 1110
BspOI GCTAGC 1 cut(s) 849
BspPI GGATC 9 cut(s) 303, 342, 389, 402, 586, 641, 686, 1277, 1496
BspT107I GGYRCC 1 cut(s) 122
BsrBI CCGCTC 3 cut(s) 93, 1327, 1599
BsrDI GCAATG 1 cut(s) 1665
BsrFI RCCGGY 7 cut(s) 371, 423, 442, 469, 496, 523, 1450
BsrI ACTGG 3 cut(s) 575, 1334, 1347
BssAI RCCGGY 7 cut(s) 371, 423, 442, 469, 496, 523, 1450
BssECI CCNNGG 4 cut(s) 85, 758, 1265, 1566
BssNAI GTATAC 1 cut(s) 1448
BssSI CACGAG 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 1566
Bst1107I GTATAC 1 cut(s) 1448
Bst2BI CACGAG 1 cut(s) 540
Bst4CI ACNGT 6 cut(s) 30, 226, 342, 1382, 1505, 1538
Bst6I CTCTTC 2 cut(s) 3, 1108
BstC8I GCNNGC 2 cut(s) 847, 972
BstDEI CTNAG 2 cut(s) 653, 698
BstDSI CCRYGG 2 cut(s) 1265, 1566
BstEII GGTNACC 1 cut(s) 1342
BstF5I GGATG 2 cut(s) 554, 1645
BstFNI CGCG 1 cut(s) 793
BstHHI GCGC 1 cut(s) 795
BstMAI GTCTC 2 cut(s) 1051, 1076
BstMCI CGRYCG 3 cut(s) 91, 228, 428
BstNSI RCATGY 2 cut(s) 22, 986
BstPI GGTNACC 1 cut(s) 1342
BstSCI CCNGG 2 cut(s) 291, 1635
BstUI CGCG 1 cut(s) 793
BstV1I GCAGC 6 cut(s) 87, 90, 294, 412, 1248, 1524
BstX2I RGATCY 2 cut(s) 295, 394
BstXI CCANNNNNNTGG 3 cut(s) 33, 192, 821
BstYI RGATCY 2 cut(s) 295, 394
BstZ17I GTATAC 1 cut(s) 1448
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 4 cut(s) 90, 371, 1303, 1734
BtgI CCRYGG 2 cut(s) 1265, 1566
BtgZI GCGATG 3 cut(s) 56, 735, 912
BtrI CACGTC 2 cut(s) 188, 1029
BtsCI GGATG 2 cut(s) 554, 1645
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 4 cut(s) 197, 247, 1387, 1543
Cac8I GCNNGC 2 cut(s) 847, 972
CfoI GCGC 1 cut(s) 795
Cfr10I RCCGGY 7 cut(s) 371, 423, 442, 469, 496, 523, 1450
Cfr13I GGNCC 5 cut(s) 276, 561, 1302, 1722, 1733
CseI GACGC 1 cut(s) 290
Csp6I GTAC 4 cut(s) 196, 289, 554, 811
CspAI ACCGGT 2 cut(s) 423, 1450
CviAII CATG 7 cut(s) 19, 318, 365, 434, 983, 1472, 1567
CviQI GTAC 4 cut(s) 196, 289, 554, 811
DdeI CTNAG 2 cut(s) 653, 698
EaeI YGGCCR 2 cut(s) 88, 369
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 3, 1108
EarI CTCTTC 2 cut(s) 3, 1108
EciI GGCGGA 5 cut(s) 732, 762, 771, 909, 1116
EclXI CGGCCG 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 1566
Eco24I GRGCYC 1 cut(s) 1637
Eco32I GATATC 1 cut(s) 1765
Eco47I GGWCC 3 cut(s) 276, 561, 1722
Eco52I CGGCCG 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 1342
EcoO65I GGTNACC 1 cut(s) 1342
EcoRV GATATC 1 cut(s) 1765
EcoT14I CCWWGG 1 cut(s) 1566
EcoT38I GRGCYC 1 cut(s) 1637
ErhI CCWWGG 1 cut(s) 1566
FaeI CATG 7 cut(s) 22, 321, 368, 437, 986, 1475, 1570
FaqI GGGAC 2 cut(s) 347, 1490
FatI CATG 7 cut(s) 18, 317, 364, 433, 982, 1471, 1566
FauI CCCGC 2 cut(s) 906, 1379
FbaI TGATCA 2 cut(s) 1023, 1540
FblI GTMKAC 1 cut(s) 1447
FokI GGATG 2 cut(s) 561, 1652
FriOI GRGCYC 1 cut(s) 1637
FspBI CTAG 5 cut(s) 252, 482, 509, 846, 1730
GlaI GCGC 1 cut(s) 794
GsaI CCCAGC 1 cut(s) 978
GsuI CTGGAG 1 cut(s) 1317
HaeIII GGCC 4 cut(s) 90, 371, 1303, 1734
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 795
Hin1II CATG 7 cut(s) 22, 321, 368, 437, 986, 1475, 1570
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HphI GGTGA 6 cut(s) 413, 1128, 1220, 1354, 1512, 1551
Hpy166II GTNNAC 6 cut(s) 305, 554, 580, 1448, 1508, 1645
Hpy188III TCNNGA 4 cut(s) 386, 1021, 1081, 1544
Hpy8I GTNNAC 6 cut(s) 305, 554, 580, 1448, 1508, 1645
Hpy99I CGWCG 2 cut(s) 359, 1252
HpyAV CCTTC 9 cut(s) 136, 324, 912, 940, 988, 1122, 1179, 1672, 1713
HpyCH4III ACNGT 6 cut(s) 30, 226, 342, 1382, 1505, 1538
HpyCH4IV ACGT 3 cut(s) 187, 809, 1028
HpyCH4V TGCA 1 cut(s) 1670
HpyF3I CTNAG 2 cut(s) 653, 698
HpySE526I ACGT 3 cut(s) 187, 809, 1028
Hsp92II CATG 7 cut(s) 22, 321, 368, 437, 986, 1475, 1570
HspAI GCGC 1 cut(s) 793
Kpn2I TCCGGA 1 cut(s) 385
Ksp22I TGATCA 2 cut(s) 1023, 1540
LmnI GCTCC 7 cut(s) 42, 122, 414, 601, 922, 1114, 1332
Lsp1109I GCAGC 6 cut(s) 87, 90, 294, 412, 1248, 1524
LweI GCATC 1 cut(s) 412
MaeI CTAG 5 cut(s) 252, 482, 509, 846, 1730
MaeII ACGT 3 cut(s) 187, 809, 1028
MaeIII GTNAC 3 cut(s) 419, 1342, 1756
MbiI CCGCTC 3 cut(s) 93, 1327, 1599
MflI RGATCY 2 cut(s) 295, 394
MhlI GDGCHC 1 cut(s) 1637
MluCI AATT 7 cut(s) 49, 158, 853, 871, 1075, 1233, 1273
MlyI GAGTC 4 cut(s) 226, 1078, 1400, 1613
MmeI TCCRAC 5 cut(s) 90, 200, 1230, 1384, 1674
MroI TCCGGA 1 cut(s) 385
MseI TTAA 2 cut(s) 1034, 1338
MslI CAYNNNNRTG 3 cut(s) 190, 587, 1743
MspA1I CMGCKG 4 cut(s) 910, 974, 1261, 1515
MspR9I CCNGG 2 cut(s) 293, 1637
Mva1269I GAATGC 2 cut(s) 847, 1378
MvnI CGCG 1 cut(s) 793
NciI CCSGG 2 cut(s) 293, 1637
NcoI CCATGG 1 cut(s) 1566
NheI GCTAGC 1 cut(s) 845
NlaIII CATG 7 cut(s) 22, 321, 368, 437, 986, 1475, 1570
NlaIV GGNNCC 5 cut(s) 38, 124, 312, 396, 1110
NmeAIII GCCGAG 2 cut(s) 66, 783
NmuCI GTSAC 3 cut(s) 419, 1342, 1756
NspI RCATGY 2 cut(s) 22, 986
OliI CACNNNNGTG 2 cut(s) 190, 587
PciI ACATGT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 1077, 1112
PctI GAATGC 2 cut(s) 847, 1378
PfeI GAWTC 6 cut(s) 382, 389, 628, 673, 718, 1547
PflMI CCANNNNNTGG 1 cut(s) 1403
PinAI ACCGGT 2 cut(s) 423, 1450
PleI GAGTC 4 cut(s) 225, 1078, 1399, 1612
PpsI GAGTC 4 cut(s) 225, 1078, 1399, 1612
PscI ACATGT 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 1342
PspFI CCCAGC 1 cut(s) 974
PspN4I GGNNCC 5 cut(s) 38, 124, 312, 396, 1110
PspPI GGNCC 5 cut(s) 276, 561, 1302, 1722, 1733
PsuI RGATCY 2 cut(s) 295, 394
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 4 cut(s) 197, 290, 555, 812
RsaNI GTAC 4 cut(s) 196, 289, 554, 811
RseI CAYNNNNRTG 3 cut(s) 190, 587, 1743
SaqAI TTAA 2 cut(s) 1034, 1338
Sau96I GGNCC 5 cut(s) 276, 561, 1302, 1722, 1733
SchI GAGTC 4 cut(s) 226, 1078, 1400, 1613
ScrFI CCNGG 2 cut(s) 293, 1637
SduI GDGCHC 1 cut(s) 1637
SfaNI GCATC 1 cut(s) 412
SinI GGWCC 3 cut(s) 276, 561, 1722
SmiMI CAYNNNNRTG 3 cut(s) 190, 587, 1743
Sse9I AATT 7 cut(s) 49, 158, 853, 871, 1075, 1233, 1273
SspMI CTAG 5 cut(s) 252, 482, 509, 846, 1730
StyD4I CCNGG 2 cut(s) 291, 1635
StyI CCWWGG 1 cut(s) 1566
TaaI ACNGT 6 cut(s) 30, 226, 342, 1382, 1505, 1538
TaiI ACGT 3 cut(s) 190, 812, 1031
TaqI TCGA 5 cut(s) 228, 839, 944, 1071, 1080
TasI AATT 7 cut(s) 49, 158, 853, 871, 1075, 1233, 1273
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 6 cut(s) 382, 389, 628, 673, 718, 1547
Tru1I TTAA 2 cut(s) 1034, 1338
Tru9I TTAA 2 cut(s) 1034, 1338
TscAI CASTG 4 cut(s) 197, 247, 1387, 1543
TseFI GTSAC 3 cut(s) 419, 1342, 1756
TseI GCWGC 6 cut(s) 75, 78, 282, 400, 1261, 1512
Tsp45I GTSAC 3 cut(s) 419, 1342, 1756
TspDTI ATGAA 6 cut(s) 306, 450, 1342, 1472, 1654, 1718
TspGWI ACGGA 3 cut(s) 94, 574, 1282
TspRI CASTG 4 cut(s) 197, 247, 1387, 1543
Van91I CCANNNNNTGG 1 cut(s) 1403
VpaK11BI GGWCC 3 cut(s) 276, 561, 1722
XapI RAATTY 2 cut(s) 158, 1075
XceI RCATGY 2 cut(s) 22, 986
XmiI GTMKAC 1 cut(s) 1447
XspI CTAG 5 cut(s) 252, 482, 509, 846, 1730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.