Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009631

Physical Location & Seq

Genomic Coordinates Reverse (-)

49480617 .. 49483612

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0387800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCGATCGAAATGCCCAAAGGGCTCCCCTTTTCAGTTGATACATGGAGTTCTTCTTCAAAGAGAAAGAGGCACCATTTCTTAACTCACGCCCACAAAGACCACTCCACTGGGATTTCCTCCCACTTTTCTTACCCGATTTACTCAACCCAACTCACCAAAACCGTCCTTCAACACTACCTCAAGCTTGAAGAATCTTTGTTTGTGGGCATTAAAGTTGGGCAATCTGTAGCTATTGATGAACCGGATGGAGCCTTCACTGATACGGCTTTCGATGCCAATCACTGTCCTGCTGAGGTTAGAAGTTGCTCCGATTTTGGTCAAATTAAAAACCCAAGCTTAAGCCCTTCGATTTTGGACCCAGAAGCAAAAGCACTCTCAGACACTGAGACGAAGCAATGGAGGATAAAACTGAGTCTGTTTCATTCAACAAGAGAAGAGCAGAGGATAGGTTACTCTTCTATTCTCCCAGAGTCCCACAGCATCTCTCCTTCATCTCTCAGACGACTACCCACCACCGCCGGCGCCTCCCTCGCGTGTCGCCTCTCGCACGGCCAGAACCCCTCGCCTCTGGCGCCTCCCTCACTTGTCCACTCTCGCACGCCCAGAACCCCATCGCCTCCGGCGCCTCCCTCACGTGTCCCCTCTCGCACGTCCAGAACCTCATCGCCTCCGGGGCCTCCCTTCTCTCACGGACAGAACCCATCCCCTCTCGGTAATGCTTCTGCTTGTGGGTTTTCAAATTTCCAGATTATGGAAGGGATTTCTGCAACTCCGACTTCTATACCAGCTGAAACTGCAGACTCTAGCATAGGGACGACCCCCACACCGAGTCCGAGTGCTGCAGTTATTCATAGTGATGTTCCAATAATGATAGAGGGATTGATCGGACTAGTGCATTCTACTAAAGCCTCTTCAAGAACCAGAGAAGATGACCAATATTATTCTTCAAGCTCTGAAAATTACTGGACAAAGAGGCATTATCAACAAAGGCTGGGGTTGGTAATTGTAAGTCTTGGTTCTCAAGATTACTTTCGAGCATGGTGTATATGTCAGGAACGTTACCATAGCCTGACTCCCATGTATTACTGCAGTGCAGCTGCAGCTGTTGGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

DUF761

Protein Analysis

372

Amino Acids

40.5

Weight (kDa)

8.42

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72790
fragaria_vesca	FvH4_6g34220
malus_domestica	MD09G1187300.v1.1 MD17G1172100.v1.1
prunus_persica	Prupe.3G044600_v2.0.a1
pyrus_communis	pycom09g10390 pycom17g16930 pycom17g16940
rosa_chinensis	RchiOBHm_Chr2g0144551
rosa_laevigata	RLG00000014981 RLG00000020088 RLG00000036003
rosa_multiflora	Rmu_sc0005789.1_g000003 Rmu_sc0029105.1_g000001 Rmu_sc0029106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101210
rosa_rugosa	Rorug02G0387800
rosa_samantha	Rh2AG439800 Rh2BG449800 Rh2CG426800 Rh2DG459700
rosa_wichuraiana	Rw2G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	72, 524, 574, 625
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	519
AclI	AACGTT	1 cut(s)	1060
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	742
AcvI	CACGTG	1 cut(s)	638
AcyI	GRCGYC	3 cut(s)	525, 575, 626
AfiI	CCNNNNNNNGG	1 cut(s)	754
AflII	CTTAAG	1 cut(s)	340
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	7 cut(s)	60, 173, 191, 429, 741, 918, 951
AhlI	ACTAGT	1 cut(s)	892
AjiI	CACGTC	1 cut(s)	654
AluBI	AGCT	7 cut(s)	187, 233, 339, 791, 954, 1100, 1106
AluI	AGCT	7 cut(s)	187, 233, 339, 791, 954, 1100, 1106
Alw26I	GTCTC	1 cut(s)	383
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	553, 677
ApeKI	GCWGC	4 cut(s)	842, 1097, 1100, 1103
ApoI	RAATTY	1 cut(s)	742
AspLEI	GCGC	3 cut(s)	527, 577, 628
AspS9I	GGNCC	2 cut(s)	358, 677
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	358
BanI	GGYRCC	4 cut(s)	72, 524, 574, 625
BanII	GRGCYC	1 cut(s)	27
BbrPI	CACGTG	1 cut(s)	638
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	829, 1087, 1109, 1115
BccI	CCATC	3 cut(s)	242, 622, 712
BceAI	ACGGC	2 cut(s)	282, 568
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	383
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	2 cut(s)	807, 893
BfmI	CTRYAG	5 cut(s)	228, 798, 843, 1090, 1101
BfoI	RGCGCY	3 cut(s)	528, 578, 629
BfrI	CTTAAG	1 cut(s)	340
BglI	GCCNNNNNGGC	2 cut(s)	22, 676
BisI	GCNGC	4 cut(s)	843, 1098, 1101, 1104
BlsI	GCNGC	4 cut(s)	844, 1099, 1102, 1105
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	654
BmgT120I	GGNCC	2 cut(s)	358, 677
BmiI	GGNNCC	8 cut(s)	26, 74, 253, 360, 526, 576, 627, 678
BmrFI	CCNGG	1 cut(s)	675
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	265, 492
BmuI	ACTGGG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	167, 1008
BpuMI	CCSGG	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	638
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	3 cut(s)	525, 575, 626
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	754
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	115, 971
Bse3DI	GCAATG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	2 cut(s)	253, 704
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	754
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	5 cut(s)	285, 378, 393, 404, 514
BseNI	ACTGG	2 cut(s)	115, 971
BseXI	GCAGC	4 cut(s)	829, 1087, 1109, 1115
BseYI	CCCAGC	1 cut(s)	994
BsgI	GTGCAG	1 cut(s)	1116
Bsh1236I	CGCG	1 cut(s)	536
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	555, 679
BshNI	GGYRCC	4 cut(s)	72, 524, 574, 625
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	4 cut(s)	245, 522, 623, 674
BslFI	GGGAC	3 cut(s)	460, 626, 829
BslI	CCNNNNNNNGG	1 cut(s)	754
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	3 cut(s)	460, 626, 829
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	2 cut(s)	555, 679
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	6, 885
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	2 cut(s)	555, 679
BspCNI	CTCAG	5 cut(s)	286, 379, 392, 405, 513
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	8 cut(s)	26, 74, 253, 360, 526, 576, 627, 678
BspMAI	CTGCAG	4 cut(s)	802, 847, 1094, 1105
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	4 cut(s)	72, 524, 574, 625
BspTI	CTTAAG	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	115, 971
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	2 cut(s)	6, 885
BssNI	GRCGYC	3 cut(s)	525, 575, 626
Bst4CI	ACNGT	2 cut(s)	166, 287
Bst6I	CTCTTC	3 cut(s)	432, 463, 919
BstACI	GRCGYC	3 cut(s)	525, 575, 626
BstAFI	CTTAAG	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	523, 602
BstDEI	CTNAG	5 cut(s)	294, 379, 387, 413, 500
BstF5I	GGATG	2 cut(s)	253, 704
BstFNI	CGCG	1 cut(s)	536
BstH2I	RGCGCY	3 cut(s)	528, 578, 629
BstHHI	GCGC	3 cut(s)	527, 577, 628
BstKTI	GATC	2 cut(s)	9, 888
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	2 cut(s)	6, 885
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 275, 533, 574, 625, 676, 797, 1103
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	5 cut(s)	228, 798, 843, 1090, 1101
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	4 cut(s)	829, 1087, 1109, 1115
BstXI	CCANNNNNNTGG	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	555, 679
BtgZI	GCGATG	2 cut(s)	600, 651
BtrI	CACGTC	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	253, 704
BtsI	GCAGTG	1 cut(s)	1099
BtsIMutI	CAGTG	5 cut(s)	108, 258, 283, 384, 1099
Cac8I	GCNNGC	2 cut(s)	523, 602
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	3 cut(s)	527, 577, 628
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	358, 677
CviAII	CATG	3 cut(s)	45, 1041, 1081
DdeI	CTNAG	5 cut(s)	294, 379, 387, 413, 500
DinI	GGCGCC	3 cut(s)	526, 576, 627
DpnI	GATC	2 cut(s)	8, 887
DpnII	GATC	2 cut(s)	6, 885
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	3 cut(s)	432, 463, 919
EarI	CTCTTC	3 cut(s)	432, 463, 919
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	358
Eco72I	CACGTG	1 cut(s)	638
EcoO109I	RGGNCCY	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	3 cut(s)	526, 576, 627
EheI	GGCGCC	3 cut(s)	526, 576, 627
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	3 cut(s)	48, 1044, 1084
FaqI	GGGAC	3 cut(s)	460, 626, 829
FatI	CATG	3 cut(s)	44, 1040, 1080
Fnu4HI	GCNGC	4 cut(s)	843, 1098, 1101, 1104
FokI	GGATG	2 cut(s)	260, 691
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	843, 1098, 1101, 1104
FspBI	CTAG	2 cut(s)	807, 893
GlaI	GCGC	3 cut(s)	526, 576, 627
GluI	GCNGC	4 cut(s)	843, 1098, 1101, 1104
GsaI	CCCAGC	1 cut(s)	998
HaeII	RGCGCY	3 cut(s)	528, 578, 629
HaeIII	GGCC	2 cut(s)	555, 679
HapII	CCGG	4 cut(s)	245, 522, 623, 674
HhaI	GCGC	3 cut(s)	527, 577, 628
Hin1I	GRCGYC	3 cut(s)	525, 575, 626
Hin1II	CATG	3 cut(s)	48, 1044, 1084
Hin6I	GCGC	3 cut(s)	525, 575, 626
HinP1I	GCGC	3 cut(s)	525, 575, 626
HindIII	AAGCTT	2 cut(s)	185, 337
HinfI	GANTC	6 cut(s)	194, 415, 473, 803, 832, 1075
HpaII	CCGG	4 cut(s)	245, 522, 623, 674
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	7 cut(s)	313, 382, 503, 777, 837, 890, 958
Hpy188III	TCNNGA	5 cut(s)	657, 748, 918, 1025, 1055
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	6 cut(s)	179, 265, 357, 501, 694, 752
HpyCH4III	ACNGT	2 cut(s)	166, 287
HpyCH4IV	ACGT	3 cut(s)	637, 653, 1060
HpyCH4V	TGCA	7 cut(s)	770, 800, 845, 898, 1092, 1097, 1103
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 275, 533, 574, 625, 676, 797, 1103
HpyF3I	CTNAG	5 cut(s)	294, 379, 387, 413, 500
HpySE526I	ACGT	3 cut(s)	637, 653, 1060
Hsp92I	GRCGYC	3 cut(s)	525, 575, 626
Hsp92II	CATG	3 cut(s)	48, 1044, 1084
HspAI	GCGC	3 cut(s)	525, 575, 626
KasI	GGCGCC	3 cut(s)	524, 574, 625
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	6, 885
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	30, 251, 314
Lsp1109I	GCAGC	4 cut(s)	829, 1087, 1109, 1115
LweI	GCATC	2 cut(s)	265, 492
MaeI	CTAG	2 cut(s)	807, 893
MaeII	ACGT	3 cut(s)	637, 653, 1060
MaeIII	GTNAC	2 cut(s)	452, 1061
MalI	GATC	2 cut(s)	8, 887
MboI	GATC	2 cut(s)	6, 885
MboII	GAAGA	8 cut(s)	45, 48, 203, 449, 450, 906, 939, 941
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	324, 742, 961, 1005
Mly113I	GGCGCC	3 cut(s)	525, 575, 626
MlyI	GAGTC	5 cut(s)	424, 482, 797, 841, 1069
MmeI	TCCRAC	1 cut(s)	800
MreI	CGCCGGCG	1 cut(s)	521
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	4 cut(s)	83, 213, 327, 341
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	3 cut(s)	791, 1100, 1106
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	4 cut(s)	245, 522, 623, 674
MspR9I	CCNGG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	898
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	8 cut(s)	22, 275, 533, 574, 625, 676, 797, 1103
NaeI	GCCGGC	1 cut(s)	523
NarI	GGCGCC	3 cut(s)	525, 575, 626
NciI	CCSGG	1 cut(s)	675
NdeII	GATC	2 cut(s)	6, 885
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	3 cut(s)	48, 1044, 1084
NlaIV	GGNNCC	8 cut(s)	26, 74, 253, 360, 526, 576, 627, 678
PciSI	GCTCTTC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	898
PdiI	GCCGGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	4 cut(s)	844, 1099, 1102, 1105
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	5 cut(s)	423, 481, 797, 840, 1069
PluTI	GGCGCC	3 cut(s)	528, 578, 629
PmaCI	CACGTG	1 cut(s)	638
PmlI	CACGTG	1 cut(s)	638
PpsI	GAGTC	5 cut(s)	423, 481, 797, 840, 1069
Ppu21I	YACGTR	1 cut(s)	638
Psp1406I	AACGTT	1 cut(s)	1060
PspCI	CACGTG	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	994
PspN4I	GGNNCC	8 cut(s)	26, 74, 253, 360, 526, 576, 627, 678
PspPI	GGNCC	2 cut(s)	358, 677
PstI	CTGCAG	4 cut(s)	802, 847, 1094, 1105
PstNI	CAGNNNCTG	1 cut(s)	386
PvuI	CGATCG	1 cut(s)	9
PvuII	CAGCTG	3 cut(s)	791, 1100, 1106
RseI	CAYNNNNRTG	1 cut(s)	858
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	83, 213, 327, 341
SatI	GCNGC	4 cut(s)	843, 1098, 1101, 1104
Sau3AI	GATC	2 cut(s)	6, 885
Sau96I	GGNCC	2 cut(s)	358, 677
SchI	GAGTC	5 cut(s)	424, 482, 797, 841, 1069
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	265, 492
SfcI	CTRYAG	5 cut(s)	228, 798, 843, 1090, 1101
SfoI	GGCGCC	3 cut(s)	526, 576, 627
SgrAI	CRCCGGYG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	3 cut(s)	182, 340, 1023
SmoI	CTYRAG	3 cut(s)	182, 340, 1023
SpeI	ACTAGT	1 cut(s)	892
Sse9I	AATT	4 cut(s)	324, 742, 961, 1005
SsiI	CCGC	1 cut(s)	519
SspDI	GGCGCC	3 cut(s)	524, 574, 625
SspI	AATATT	1 cut(s)	941
SspMI	CTAG	2 cut(s)	807, 893
StyD4I	CCNGG	1 cut(s)	673
TaaI	ACNGT	2 cut(s)	166, 287
TaiI	ACGT	3 cut(s)	640, 656, 1063
TaqI	TCGA	5 cut(s)	5, 9, 273, 350, 1036
TasI	AATT	4 cut(s)	324, 742, 961, 1005
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	4 cut(s)	83, 213, 327, 341
Tru9I	TTAA	4 cut(s)	83, 213, 327, 341
TscAI	CASTG	5 cut(s)	115, 265, 290, 391, 1099
TseI	GCWGC	4 cut(s)	842, 1097, 1100, 1103
TspDTI	ATGAA	4 cut(s)	255, 413, 483, 842
TspGWI	ACGGA	1 cut(s)	708
TspRI	CASTG	5 cut(s)	115, 265, 290, 391, 1099
Van91I	CCANNNNNTGG	1 cut(s)	754
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	742
XspI	CTAG	2 cut(s)	807, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.