Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009631

Physical Location & Seq

Genomic Coordinates Reverse (-)

60295634 .. 60296276

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAAGAAGACGAAGATATGTCTCCACCTTTCTGGCTCCGGCAGCAACCCAACACTCCCTGCCGCCACCTCCGCCGCTCTACGTCATCTCTCCTCTTCAGCTCCGACACCTTCATCCTCCTCTTCCTCGCTGTAGCTCTTGCCTTCATATTTATCATAGTCTCATCTGTGCATTCCTTTACTTCTCAGATATTCAAATCCAACATGGTGAAGAAGAGCTGGGACTCCCTCAACTTCGTCCTTGTCCTCTTCACCATTGTCTGCAGCTTTCTCTGCAGAAACACCACCGGTAACTACGACGACGGTGATTGGCAACGACGTTCTAGCTACTGCTGCTGCTCAGCCGCAAGAGGTGGTCAAATCAATCCCGTCCACGCTGCGTCAGTGAATCATACGAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

DUF761

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

8.28

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72790
fragaria_vesca	FvH4_6g34220
malus_domestica	MD09G1187300.v1.1 MD17G1172100.v1.1
prunus_persica	Prupe.3G044600_v2.0.a1
pyrus_communis	pycom09g10390 pycom17g16930 pycom17g16940
rosa_chinensis	RchiOBHm_Chr2g0144551
rosa_laevigata	RLG00000014981 RLG00000020088 RLG00000036003
rosa_multiflora	Rmu_sc0005789.1_g000003 Rmu_sc0029105.1_g000001 Rmu_sc0029106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101210
rosa_rugosa	Rorug02G0387800
rosa_samantha	Rh2AG439800 Rh2BG449800 Rh2CG426800 Rh2DG459700
rosa_wichuraiana	Rw2G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AciI	CCGC	4 cut(s)	64, 73, 76, 345
AcuI	CTGAAG	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	5 cut(s)	102, 137, 219, 267, 327
AluI	AGCT	5 cut(s)	102, 137, 219, 267, 327
Alw26I	GTCTC	2 cut(s)	27, 166
ApeKI	GCWGC	5 cut(s)	43, 264, 333, 336, 377
AsiGI	ACCGGT	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	220, 244, 317
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	5 cut(s)	55, 276, 320, 323, 364
BcoDI	GTCTC	2 cut(s)	27, 166
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	3 cut(s)	132, 262, 274
BisI	GCNGC	8 cut(s)	44, 64, 76, 265, 334, 337, 345, 378
BlpI	GCTNAGC	1 cut(s)	340
BlsI	GCNGC	8 cut(s)	45, 65, 77, 266, 335, 338, 346, 379
BmiI	GGNNCC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	287
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	200, 354
BseRI	GAGGAG	2 cut(s)	83, 110
BseXI	GCAGC	5 cut(s)	55, 276, 320, 323, 364
BseYI	CCCAGC	1 cut(s)	219
BshTI	ACCGGT	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	40, 288
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	27, 166
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	340
BspACI	CCGC	4 cut(s)	64, 73, 76, 345
BspCNI	CTCAG	2 cut(s)	199, 353
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	2 cut(s)	266, 278
BspQI	GCTCTTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	4 cut(s)	101, 128, 209, 254
BstDEI	CTNAG	2 cut(s)	186, 340
BstF5I	GGATG	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	27, 166
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 72, 273, 333
BstSFI	CTRYAG	3 cut(s)	132, 262, 274
BstV1I	GCAGC	5 cut(s)	55, 276, 320, 323, 364
BstV2I	GAAGAC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	287
CseI	GACGC	1 cut(s)	369
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	7 cut(s)	37, 102, 137, 219, 267, 327, 344
CviKI_1	RGCY	7 cut(s)	37, 102, 137, 219, 267, 327, 344
DdeI	CTNAG	2 cut(s)	186, 340
Eam1104I	CTCTTC	4 cut(s)	101, 128, 209, 254
EarI	CTCTTC	4 cut(s)	101, 128, 209, 254
EciI	GGCGGA	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	82
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	20, 149, 158, 206, 393
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	8 cut(s)	44, 64, 76, 265, 334, 337, 345, 378
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	8 cut(s)	44, 64, 76, 265, 334, 337, 345, 378
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	8 cut(s)	44, 64, 76, 265, 334, 337, 345, 378
GsaI	CCCAGC	1 cut(s)	223
HapII	CCGG	2 cut(s)	40, 288
HgaI	GACGC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	224, 388
HpaII	CCGG	2 cut(s)	40, 288
HphI	GGTGA	3 cut(s)	220, 244, 317
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	106, 189
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	3 cut(s)	302, 305, 321
HpyAV	CCTTC	2 cut(s)	121, 154
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	83, 319
HpyCH4V	TGCA	3 cut(s)	172, 264, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 72, 273, 333
HpyF3I	CTNAG	2 cut(s)	186, 340
HpySE526I	ACGT	2 cut(s)	83, 319
Hsp92II	CATG	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	42, 107
LpnPI	CCDG	5 cut(s)	19, 53, 73, 205, 301
Lsp1109I	GCAGC	5 cut(s)	55, 276, 320, 323, 364
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	83, 319
MaeIII	GTNAC	1 cut(s)	290
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	8 cut(s)	17, 20, 26, 88, 115, 223, 226, 241
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	129, 225
MnlI	CCTC	8 cut(s)	80, 104, 128, 131, 137, 239, 257, 344
MseI	TTAA	1 cut(s)	403
MspI	CCGG	2 cut(s)	40, 288
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	43, 72, 273, 333
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	8 cut(s)	45, 65, 77, 266, 335, 338, 346, 379
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	38
PstI	CTGCAG	2 cut(s)	266, 278
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	8 cut(s)	44, 64, 76, 265, 334, 337, 345, 378
SchI	GAGTC	1 cut(s)	218
SfcI	CTRYAG	3 cut(s)	132, 262, 274
SsiI	CCGC	4 cut(s)	64, 73, 76, 345
SspMI	CTAG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	2 cut(s)	86, 322
TauI	GCSGC	3 cut(s)	66, 78, 347
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	5 cut(s)	43, 264, 333, 336, 377
TspDTI	ATGAA	2 cut(s)	103, 136
TspRI	CASTG	1 cut(s)	390
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.