Rw2G035980

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009631
Physical Location & Seq
Forward (+)
59046067 .. 59047967
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035980.1

Sequence Viewer

Length: 1659 bp
ATGGAAGAAGACGAAGATAATTTGTCTCCACCTTTCTGGCTCCGGCAGCAACCCAACACTCCCCGGCGCCGCCTCCGCCGCTCCACCTCCTCTCTTCTCTTCAGCTCCGGCGCCTTCATCCTCCTCCTCCTCGCCGTAGCTCTTGCCTTCATATTTATCATAGTCCCATCTGTGCATTCCTTTACTTCTCAGATATTCAGACCCAACATGGTGAAGAAGAGCTGGGACTCCCTCAACTTTGTCCTCGTCCTCTTCGCCATTGTCTGCGGCTTCCTCGGCAGAAACACCGCCGGTAACGACGACGACGGCGATGGCAGCGGCGTTCCGGCTACTGCTGCTGCTGCTCAGCCGCAAGAGGTGGTCAAATCAATCCCGTCCACGCCGCGTCAGTGGTACGAGTATTCAGATCCGACGGTGTACAATGATCGTGCTGTTAACAGAGTGGGCTCCATGAGAAGCAGCAGCTCGTACCCTGATCTCCGACAAGACTCCGAATGGATCGCCAGAGATGACCGGTGGCGATTCTACGACGATACCCACGTCAGCAACTACCGGGTTCCGGACTCCGATCAGGTCCGGCAACACCGCCGTCGGGCGTCCTGGCACGAAGCATATGATGCGAGTAGCACCAAGAATATTCCTGTGGACACTTATGTGATCCGTACGGAACAAGCTTCTCCATCATCTACACCAACATCCGAGGAGTCTGTTGTTCTGCCGCCGGTATCGTCGCCTTCTCCGCCGTTATCTCCGCCGCGGAAGTCGAAGAGGACGTACCAAGCTGTTGGGGAGAAAGAGAGCAGAAATGATGATTCGGATGTGAAGAGTAATTTCCGACAGCCAGCGCCTGTACCGGCTTTACCATTGCCGGAATATGAAGAAGGGGAGAAATGGAGAGGGAAGAATGTGAAGAAGAGAGGAGTTGCCACTACGTTCTTGATAACTTCACTGAGGAGGAAGAAGAAGAAGCAGAGACAAAAGAGTGTCGAAAATTTCGAAACTCTACTCAACTCTGCTGCGGCTTCTTCTTCAATGCCTCTGCATCCTCCGCCGTCTCCCCCACCTCCGCCACCCCCACCGCCGCCTCCACCGTCAGTCTTCCACAGCTTGTTTCAATCAAAGAAACCAAAACCCAGAAAATCTCATCACTCAAATTCACAGCAACCACCGCCGCCGCCGGTCACTTCCGCCACTCGACTTTCGAGGACCAAGGCCCAAGTCAGCCCCATGATGACGGCCCAGAAGCCGCCATTGCCGGTCAAGGTGAAGAGCTCCAACATTATAGAAGATGATAATGCAAACAGCGGAGGGGACTCACCACTAATGTCACGCATTCCTCCGCCGCCGCCATTGCCGCCGTTCAGAATGCCGGAGCTGAAGTATGCGGTGCACGGCGATTTTGTTAGAATCAAAAGCAACAACAGCTCAAGAAGTGGGTCGCCGGATTTAGATGATGGAGGTGAGGATTCGCCGACCAGTGAGACTAGCCCATTGAGTGGAAATGAATCGCCGGCGAGACCCACATTCTGTCCGAGCCCAGATGTGAACACGAAAGCTGATACCTTCATTGCGAGGTTCAGAGCTGGTCTGAGGTTGGAGAAGATCAACTCTGTGAATGAGAGGAGGTCTAATTTGGGCCCGGATTCGAGGGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

552

Amino Acids

61.22

Weight (kDa)

9.64

Isoelectric Point (pI)

76.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 513 - 539 9.9e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 66, 110
AccB7I CCANNNNNTGG 1 cut(s) 1496
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 2 cut(s) 385, 757
AccIII TCCGGA 1 cut(s) 559
AclWI GGATC 3 cut(s) 401, 506, 652
AcsI RAATTY 2 cut(s) 991, 1153
AcuI CTGAAG 2 cut(s) 85, 1397
AcyI GRCGYC 3 cut(s) 67, 111, 596
AfaI GTAC 6 cut(s) 395, 419, 470, 664, 776, 852
AfiI CCNNNNNNNGG 3 cut(s) 559, 592, 1496
AgeI ACCGGT 1 cut(s) 513
AgsI TTSAA 2 cut(s) 1032, 1115
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 1 cut(s) 599
AleI CACNNNNGTG 1 cut(s) 653
Alw21I GWGCWC 2 cut(s) 1274, 1392
Alw26I GTCTC 5 cut(s) 30, 967, 1059, 1475, 1510
Alw44I GTGCAC 1 cut(s) 1388
AlwI GGATC 3 cut(s) 401, 506, 652
AlwNI CAGNNNCTG 1 cut(s) 848
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 3 cut(s) 1212, 1236, 1636
ApaI GGGCCC 1 cut(s) 1640
ApaLI GTGCAC 1 cut(s) 1388
ApeKI GCWGC 8 cut(s) 46, 315, 335, 338, 341, 459, 462, 1016
ApoI RAATTY 2 cut(s) 991, 1153
AsiGI ACCGGT 1 cut(s) 513
AspLEI GCGC 3 cut(s) 69, 113, 847
AspS9I GGNCC 6 cut(s) 574, 1206, 1213, 1237, 1636, 1637
AsuC2I CCSGG 3 cut(s) 64, 554, 1640
AsuHPI GGTGA 4 cut(s) 223, 1276, 1308, 1472
AsuII TTCGAA 1 cut(s) 996
AvaII GGWCC 2 cut(s) 574, 1206
BaeGI GKGCMC 2 cut(s) 1392, 1640
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BanI GGYRCC 2 cut(s) 66, 110
BanII GRGCYC 4 cut(s) 449, 1274, 1538, 1640
BarI GAAGNNNNNNTAC 2 cut(s) 758, 790
BbsI GAAGAC 2 cut(s) 15, 1090
Bbv12I GWGCWC 2 cut(s) 1274, 1392
BbvI GCAGC 8 cut(s) 58, 322, 325, 327, 328, 471, 474, 1003
BccI CCATC 4 cut(s) 175, 305, 688, 1448
BceAI ACGGC 8 cut(s) 119, 322, 573, 727, 1036, 1251, 1342, 1408
BciT130I CCWGG 1 cut(s) 601
BcnI CCSGG 3 cut(s) 64, 554, 1640
BcoDI GTCTC 5 cut(s) 30, 967, 1059, 1475, 1510
BfaI CTAG 1 cut(s) 1485
BfoI RGCGCY 3 cut(s) 70, 114, 848
BlpI GCTNAGC 1 cut(s) 345
Bme1390I CCNGG 4 cut(s) 64, 554, 601, 1640
Bme18I GGWCC 2 cut(s) 574, 1206
BmgBI CACGTC 1 cut(s) 541
BmgT120I GGNCC 6 cut(s) 574, 1206, 1213, 1237, 1636, 1637
BmiI GGNNCC 6 cut(s) 41, 68, 112, 448, 558, 1638
BmrFI CCNGG 4 cut(s) 64, 554, 601, 1640
BmsI GCATC 2 cut(s) 607, 1051
BpiI GAAGAC 2 cut(s) 15, 1090
Bpu1102I GCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 996
BpuEI CTTGAG 1 cut(s) 1411
BpuMI CCSGG 3 cut(s) 64, 554, 1640
BsaHI GRCGYC 3 cut(s) 67, 111, 596
BsaI GGTCTC 1 cut(s) 1510
BsaJI CCNNGG 5 cut(s) 62, 274, 699, 755, 1209
BsaWI WCCGGW 2 cut(s) 513, 559
BsaXI ACNNNNNCTCC 2 cut(s) 1364, 1394
Bsc4I CCNNNNNNNGG 3 cut(s) 559, 592, 1496
Bse118I RCCGGY 7 cut(s) 290, 513, 721, 853, 1177, 1255, 1510
Bse1I ACTGG 1 cut(s) 1476
Bse3DI GCAATG 4 cut(s) 863, 1250, 1349, 1566
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 1 cut(s) 601
BseDI CCNNGG 5 cut(s) 62, 274, 699, 755, 1209
BseGI GGATG 4 cut(s) 117, 695, 823, 1042
BseLI CCNNNNNNNGG 3 cut(s) 559, 592, 1496
BseMI GCAATG 4 cut(s) 863, 1250, 1349, 1566
BseMII CTCAG 4 cut(s) 203, 359, 941, 1580
BseNI ACTGG 1 cut(s) 1476
BseRI GAGGAG 8 cut(s) 79, 113, 116, 119, 716, 933, 967, 1636
BseSI GKGCMC 2 cut(s) 1392, 1640
BseXI GCAGC 8 cut(s) 58, 322, 325, 327, 328, 471, 474, 1003
BseYI CCCAGC 1 cut(s) 222
Bsh1236I CGCG 2 cut(s) 385, 757
BshFI GGCC 3 cut(s) 1214, 1238, 1638
BshNI GGYRCC 2 cut(s) 66, 110
BshTI ACCGGT 1 cut(s) 513
BsiHKAI GWGCWC 2 cut(s) 1274, 1392
BsiWI CGTACG 1 cut(s) 662
BslFI GGGAC 3 cut(s) 149, 239, 1325
BslI CCNNNNNNNGG 3 cut(s) 559, 592, 1496
BsmAI GTCTC 5 cut(s) 30, 967, 1059, 1475, 1510
BsmBI CGTCTC 1 cut(s) 1059
BsmFI GGGAC 3 cut(s) 149, 239, 1325
BsmI GAATGC 3 cut(s) 175, 1332, 1371
BsnI GGCC 3 cut(s) 1214, 1238, 1638
Bso31I GGTCTC 1 cut(s) 1510
Bsp119I TTCGAA 1 cut(s) 996
Bsp120I GGGCCC 1 cut(s) 1636
Bsp1286I GDGCHC 5 cut(s) 449, 1274, 1392, 1538, 1640
Bsp13I TCCGGA 1 cut(s) 559
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
Bsp1720I GCTNAGC 1 cut(s) 345
BspANI GGCC 3 cut(s) 1214, 1238, 1638
BspCNI CTCAG 4 cut(s) 202, 358, 942, 1581
BspEI TCCGGA 1 cut(s) 559
BspFNI CGCG 2 cut(s) 385, 757
BspLI GGNNCC 6 cut(s) 41, 68, 112, 448, 558, 1638
BspPI GGATC 3 cut(s) 401, 506, 652
BspQI GCTCTTC 2 cut(s) 212, 1262
BspT104I TTCGAA 1 cut(s) 996
BspT107I GGYRCC 2 cut(s) 66, 110
BspTNI GGTCTC 1 cut(s) 1510
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 4 cut(s) 863, 1250, 1349, 1566
BsrFI RCCGGY 7 cut(s) 290, 513, 721, 853, 1177, 1255, 1510
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 1476
BssAI RCCGGY 7 cut(s) 290, 513, 721, 853, 1177, 1255, 1510
BssECI CCNNGG 5 cut(s) 62, 274, 699, 755, 1209
BssMI GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
BssNI GRCGYC 3 cut(s) 67, 111, 596
BssT1I CCWWGG 1 cut(s) 1209
Bst2UI CCWGG 1 cut(s) 601
Bst4CI ACNGT 2 cut(s) 415, 1092
Bst6I CTCTTC 8 cut(s) 99, 104, 212, 257, 761, 818, 908, 1262
BstACI GRCGYC 3 cut(s) 67, 111, 596
BstAPI GCANNNNNTGC 1 cut(s) 617
BstAUI TGTACA 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 996
BstC8I GCNNGC 2 cut(s) 843, 1512
BstDEI CTNAG 4 cut(s) 189, 345, 950, 1589
BstDSI CCRYGG 1 cut(s) 755
BstF5I GGATG 4 cut(s) 117, 695, 823, 1042
BstFNI CGCG 2 cut(s) 385, 757
BstH2I RGCGCY 3 cut(s) 70, 114, 848
BstHHI GCGC 3 cut(s) 69, 113, 847
BstKTI GATC 7 cut(s) 409, 427, 478, 501, 571, 660, 1605
BstMAI GTCTC 5 cut(s) 30, 967, 1059, 1475, 1510
BstMBI GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
BstNI CCWGG 1 cut(s) 601
BstSCI CCNGG 4 cut(s) 62, 552, 599, 1638
BstSLI GKGCMC 2 cut(s) 1392, 1640
BstUI CGCG 2 cut(s) 385, 757
BstV1I GCAGC 8 cut(s) 58, 322, 325, 327, 328, 471, 474, 1003
BstV2I GAAGAC 2 cut(s) 15, 1090
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 2 cut(s) 36, 785
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 3 cut(s) 1214, 1238, 1638
BtgI CCRYGG 1 cut(s) 755
BtgZI GCGATG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 4 cut(s) 117, 695, 823, 1042
BtsIMutI CAGTG 3 cut(s) 395, 947, 1483
Cac8I GCNNGC 2 cut(s) 843, 1512
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 3 cut(s) 69, 113, 847
Cfr10I RCCGGY 7 cut(s) 290, 513, 721, 853, 1177, 1255, 1510
Cfr13I GGNCC 6 cut(s) 574, 1206, 1213, 1237, 1636, 1637
Cfr42I CCGCGG 1 cut(s) 758
CseI GACGC 2 cut(s) 374, 585
Csp6I GTAC 6 cut(s) 394, 418, 469, 663, 775, 851
CspAI ACCGGT 1 cut(s) 513
CviAII CATG 3 cut(s) 208, 451, 1228
CviQI GTAC 6 cut(s) 394, 418, 469, 663, 775, 851
DdeI CTNAG 4 cut(s) 189, 345, 950, 1589
DinI GGCGCC 2 cut(s) 68, 112
DpnI GATC 7 cut(s) 408, 426, 477, 500, 570, 659, 1604
DpnII GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
Eam1104I CTCTTC 8 cut(s) 99, 104, 212, 257, 761, 818, 908, 1262
EarI CTCTTC 8 cut(s) 99, 104, 212, 257, 761, 818, 908, 1262
EciI GGCGGA 7 cut(s) 65, 729, 741, 1038, 1056, 1177, 1329
Ecl136II GAGCTC 1 cut(s) 1272
Eco130I CCWWGG 1 cut(s) 1209
Eco24I GRGCYC 4 cut(s) 449, 1274, 1538, 1640
Eco31I GGTCTC 1 cut(s) 1510
Eco47I GGWCC 2 cut(s) 574, 1206
Eco53kI GAGCTC 1 cut(s) 1272
Eco57I CTGAAG 2 cut(s) 85, 1397
EcoICRI GAGCTC 1 cut(s) 1272
EcoRII CCWGG 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 1209
EcoT38I GRGCYC 4 cut(s) 449, 1274, 1538, 1640
EgeI GGCGCC 2 cut(s) 68, 112
EheI GGCGCC 2 cut(s) 68, 112
ErhI CCWWGG 1 cut(s) 1209
Esp3I CGTCTC 1 cut(s) 1059
FaeI CATG 3 cut(s) 211, 454, 1231
FaqI GGGAC 3 cut(s) 149, 239, 1325
FatI CATG 3 cut(s) 207, 450, 1227
FauNDI CATATG 1 cut(s) 613
FokI GGATG 4 cut(s) 104, 682, 830, 1029
FriOI GRGCYC 4 cut(s) 449, 1274, 1538, 1640
FspBI CTAG 1 cut(s) 1485
GlaI GCGC 3 cut(s) 68, 112, 846
GsaI CCCAGC 1 cut(s) 226
HaeII RGCGCY 3 cut(s) 70, 114, 848
HaeIII GGCC 3 cut(s) 1214, 1238, 1638
HgaI GACGC 2 cut(s) 374, 585
HhaI GCGC 3 cut(s) 69, 113, 847
Hin1I GRCGYC 3 cut(s) 67, 111, 596
Hin1II CATG 3 cut(s) 211, 454, 1231
Hin6I GCGC 3 cut(s) 67, 111, 845
HinP1I GCGC 3 cut(s) 67, 111, 845
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 1 cut(s) 672
HpaI GTTAAC 1 cut(s) 436
HphI GGTGA 4 cut(s) 223, 1276, 1308, 1472
Hpy166II GTNNAC 6 cut(s) 378, 418, 436, 646, 1390, 1546
Hpy188III TCNNGA 3 cut(s) 560, 937, 1428
Hpy8I GTNNAC 6 cut(s) 378, 418, 436, 646, 1390, 1546
Hpy99I CGWCG 7 cut(s) 302, 305, 308, 415, 533, 594, 733
HpyAV CCTTC 6 cut(s) 124, 157, 744, 875, 1573, 1646
HpyCH4III ACNGT 2 cut(s) 415, 1092
HpyCH4IV ACGT 3 cut(s) 540, 773, 932
HpyCH4V TGCA 4 cut(s) 175, 1042, 1298, 1390
HpyF3I CTNAG 4 cut(s) 189, 345, 950, 1589
HpySE526I ACGT 3 cut(s) 540, 773, 932
Hsp92I GRCGYC 3 cut(s) 67, 111, 596
Hsp92II CATG 3 cut(s) 211, 454, 1231
HspAI GCGC 3 cut(s) 67, 111, 845
KasI GGCGCC 2 cut(s) 66, 110
Kpn2I TCCGGA 1 cut(s) 559
KroI GCCGGC 1 cut(s) 1510
KroNI GCCGGC 1 cut(s) 1512
KspAI GTTAAC 1 cut(s) 436
KspI CCGCGG 1 cut(s) 758
Kzo9I GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
LguI GCTCTTC 2 cut(s) 212, 1262
LmnI GCTCC 6 cut(s) 45, 86, 110, 452, 1277, 1372
Lsp1109I GCAGC 8 cut(s) 58, 322, 325, 327, 328, 471, 474, 1003
LweI GCATC 2 cut(s) 607, 1051
MaeI CTAG 1 cut(s) 1485
MaeII ACGT 3 cut(s) 540, 773, 932
MaeIII GTNAC 3 cut(s) 293, 1180, 1326
MalI GATC 7 cut(s) 408, 426, 477, 500, 570, 659, 1604
MbiI CCGCTC 1 cut(s) 81
MboI GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 5 cut(s) 449, 1274, 1392, 1538, 1640
MluCI AATT 5 cut(s) 19, 829, 991, 1153, 1630
Mly113I GGCGCC 2 cut(s) 67, 111
MlyI GAGTC 5 cut(s) 221, 482, 557, 713, 1307
MmeI TCCRAC 5 cut(s) 434, 505, 859, 1299, 1575
MreI CGCCGGCG 1 cut(s) 1510
MroI TCCGGA 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 1510
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 653
MspA1I CMGCKG 3 cut(s) 318, 757, 1305
MspR9I CCNGG 4 cut(s) 64, 554, 601, 1640
Mva1269I GAATGC 3 cut(s) 175, 1332, 1371
MvaI CCWGG 1 cut(s) 601
MvnI CGCG 2 cut(s) 385, 757
NaeI GCCGGC 1 cut(s) 1512
NarI GGCGCC 2 cut(s) 67, 111
NciI CCSGG 3 cut(s) 64, 554, 1640
NdeI CATATG 1 cut(s) 613
NdeII GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
NgoMIV GCCGGC 1 cut(s) 1510
NlaIII CATG 3 cut(s) 211, 454, 1231
NlaIV GGNNCC 6 cut(s) 41, 68, 112, 448, 558, 1638
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 1180, 1326
NspV TTCGAA 1 cut(s) 996
OliI CACNNNNGTG 1 cut(s) 653
PciSI GCTCTTC 2 cut(s) 212, 1262
PcsI WCGNNNNNNNCGW 4 cut(s) 306, 537, 770, 993
PctI GAATGC 3 cut(s) 175, 1332, 1371
PdiI GCCGGC 1 cut(s) 1512
PfeI GAWTC 6 cut(s) 522, 812, 1407, 1466, 1505, 1643
Pfl23II CGTACG 1 cut(s) 662
PflMI CCANNNNNTGG 1 cut(s) 1496
PinAI ACCGGT 1 cut(s) 513
PleI GAGTC 5 cut(s) 221, 482, 557, 712, 1307
PluTI GGCGCC 2 cut(s) 70, 114
PpsI GAGTC 5 cut(s) 221, 482, 557, 712, 1307
Psp124BI GAGCTC 1 cut(s) 1274
Psp6I CCWGG 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 599
PspLI CGTACG 1 cut(s) 662
PspN4I GGNNCC 6 cut(s) 41, 68, 112, 448, 558, 1638
PspOMI GGGCCC 1 cut(s) 1636
PspPI GGNCC 6 cut(s) 574, 1206, 1213, 1237, 1636, 1637
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 6 cut(s) 395, 419, 470, 664, 776, 852
RsaNI GTAC 6 cut(s) 394, 418, 469, 663, 775, 851
RseI CAYNNNNRTG 1 cut(s) 653
SacI GAGCTC 1 cut(s) 1274
SacII CCGCGG 1 cut(s) 758
SapI GCTCTTC 2 cut(s) 212, 1262
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 7 cut(s) 406, 424, 475, 498, 568, 657, 1602
Sau96I GGNCC 6 cut(s) 574, 1206, 1213, 1237, 1636, 1637
SchI GAGTC 5 cut(s) 221, 482, 557, 713, 1307
ScrFI CCNGG 4 cut(s) 64, 554, 601, 1640
SduI GDGCHC 5 cut(s) 449, 1274, 1392, 1538, 1640
SfaNI GCATC 2 cut(s) 607, 1051
SfoI GGCGCC 2 cut(s) 68, 112
Sfr303I CCGCGG 1 cut(s) 758
SfuI TTCGAA 1 cut(s) 996
SgrAI CRCCGGYG 1 cut(s) 1510
SgrBI CCGCGG 1 cut(s) 758
SinI GGWCC 2 cut(s) 574, 1206
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 1426
SmoI CTYRAG 1 cut(s) 1426
Sse9I AATT 5 cut(s) 19, 829, 991, 1153, 1630
SspDI GGCGCC 2 cut(s) 66, 110
SspI AATATT 1 cut(s) 637
SspMI CTAG 1 cut(s) 1485
SstI GAGCTC 1 cut(s) 1274
StyD4I CCNGG 4 cut(s) 62, 552, 599, 1638
StyI CCWWGG 1 cut(s) 1209
TaaI ACNGT 2 cut(s) 415, 1092
TaiI ACGT 3 cut(s) 543, 776, 935
TaqI TCGA 6 cut(s) 764, 987, 996, 1195, 1202, 1646
TasI AATT 5 cut(s) 19, 829, 991, 1153, 1630
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 6 cut(s) 522, 812, 1407, 1466, 1505, 1643
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 3 cut(s) 395, 954, 1483
TseFI GTSAC 2 cut(s) 1180, 1326
TseI GCWGC 8 cut(s) 46, 315, 335, 338, 341, 459, 462, 1016
Tsp45I GTSAC 2 cut(s) 1180, 1326
TspDTI ATGAA 5 cut(s) 106, 139, 891, 1518, 1555
TspGWI ACGGA 2 cut(s) 650, 680
TspRI CASTG 3 cut(s) 395, 954, 1483
Van91I CCANNNNNTGG 1 cut(s) 1496
VneI GTGCAC 1 cut(s) 1388
VpaK11BI GGWCC 2 cut(s) 574, 1206
XapI RAATTY 2 cut(s) 991, 1153
XspI CTAG 1 cut(s) 1485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.