MD09G1187300.v1.1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0009631
Physical Location & Seq
Reverse (-)
16328595 .. 16330379
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1187300.v1.1.491

Sequence Viewer

Length: 1785 bp
ATGGATGAAGAGGAAAACATGTCGCCACCCTTTTGGCTCCAAGCCTCCGACTCTTTCCGGCAATCCAACCATCGCCGCCGCCTCGGCCGCTCCTCCTCTTCTGTTTTCTTCAGCTCCGGCGCGTTCATTTTCGCCTTGCTTGCTGTAGCTATTGTGTTTATTTTCTTCATAATCCCTTCACTTTTGTCCTTCACTTCTCAAATTTTTAGACCGCATTTGGTAAAAAAAAGTTGGGATTCTCTCAATTTCGTCCTCGTACTCTTCGCAATTGTTTGCGGATTTCTGAGCAGAGGCACCGGCAACGACAACAACGTTAGCAGTCCCACGTCATACGATGCTTCTTCTCCACAAAAGCTTGAGAAGTCAAACCCATCAATCCCACGTCAGTGGTACGATCAGTATTCCGATCGGACGATCTATAATCAAACCACTGGTGCTAGTACGATGAACAGACGAGTGAGGACCAGCAGCTCGTACCCTGATCTACGCCAACAGGAATCTTCGTGGAATGTCGTTAGGGATGAACGGTGGCGATCCTACGACGATACCCATGTGGCCGGTTATCGGGTTTCGGATTCAGATCAGCAGCATCAGGTCCACCGCCGTCACCGGTCGTGGCATGAAGAACCGGCGCAGTTTCTAGCACAAGAACAAGTAGGACGTGTACGACGGACCAAGAATATACCGGCGGACATTTTTGCGATCCGTACGGAGCAAGCTAGTTCTTCACACGCACAAATTCTGGCTAATCAATCCGATCCTCAGCCGCCATCTCCGCCACGGACACAATCTCCGCCACCTCCTCCGCTGCCGCGCAGGACAAAGAGGACGTACCAAGCTATTGGAGAGAAAGAAAAATCGAATGCTAGTGACAATTTGGAAGTAAAGAAAATTTTGCCCCAACCGTCTGCTCCGCCGTTACCTCCGCCATCACCACCGCTGTGGACGTCGAAGGAGGCTGAGAACAAGAAAACGTCTGCCGGGAAATATGCGAAGAAGAAGGGAGTTGCTACCACTAAAGAGTTCTTGATCACGTCATTAAGGAGGAATAAGAAGAAGCAGAGACAAAAGAGCGTCGAAAATTTTGAGACTCTCCTCGCTTCTGCTTCTTCGGCTTCTTTGTCTTTACTTCCGCCGCCCTCACCGCCGCCTCCTCCGCCACCGCTACCGCCGCCTTCGGTTTTTCACAACTTGTTTTCTTCAAAGAAATCCAACAAACACAAGAAAATTATTCACTCAATTCCACAACCGCCATCGCCACCGCCGCCGCGGCGGGTCACTTCCACCGCGCGTTTATCGAAAACCAAAACCCAAGTGTGGCCCACGACGACGACCCAAAAACCACCACAGCCAGTCAAGGTTAGTAGGTTCAGCAATGCGGATGATGAGAATGCTAACAGTGGTGGGGAGTCGCCATTGATTGGAATACCGCCGCCACCGCCGCTACCGCCATTTAGAATGCCGGTTATGAAATACAAGGTGCACGGGGACTTTGTTAGGATCAAAAGCAACGACAGTTCACGCAGCGGCTCGCCGGATTTGGACGATAGTGATCAGGATTCAGTTCCATCGCCGACCACGGAAGCTGGTAGTAGAACTCCACTGGAGAACAGAGAGTCGCCGACGAAAGCTATGTTCTGTCGGAGCCCGGACGTAAACACCAAAGCTGATACCTTCATTGCAAGGTTCAGAGCTGGTTTGAAGTTGGAGAAGATGAATTCTGTTAGGGCAAGGTCCAATCTAGGCCCAAATTCAAGTGAAGGAGAAGAAGGCCCAAGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
DUF761

Protein Analysis

595

Amino Acids

66.32

Weight (kDa)

10.04

Isoelectric Point (pI)

75.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 550 - 576 7.5e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 950
AccB1I GGYRCC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 1421
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 5 cut(s) 122, 814, 1270, 1289, 1291
AclI AACGTT 1 cut(s) 312
AclWI GGATC 4 cut(s) 528, 697, 752, 1508
AcoI YGGCCR 2 cut(s) 85, 555
AcsI RAATTY 6 cut(s) 201, 738, 891, 1081, 1717, 1750
AcuI CTGAAG 1 cut(s) 94
AcyI GRCGYC 1 cut(s) 947
AfaI GTAC 7 cut(s) 258, 392, 442, 476, 666, 709, 833
AfiI CCNNNNNNNGG 3 cut(s) 564, 1317, 1421
AflIII ACRYGT 2 cut(s) 18, 661
AgeI ACCGGT 1 cut(s) 609
AgsI TTSAA 3 cut(s) 1203, 1702, 1755
AjiI CACGTC 4 cut(s) 327, 383, 662, 1035
AleI CACNNNNGTG 2 cut(s) 385, 940
Alw21I GWGCWC 1 cut(s) 1485
Alw26I GTCTC 2 cut(s) 1057, 1082
Alw44I GTGCAC 1 cut(s) 1481
AlwI GGATC 4 cut(s) 528, 697, 752, 1508
AoxI GGCC 5 cut(s) 85, 555, 1319, 1744, 1771
ApaLI GTGCAC 1 cut(s) 1481
ApeKI GCWGC 4 cut(s) 468, 586, 808, 1524
ApoI RAATTY 6 cut(s) 201, 738, 891, 1081, 1717, 1750
AsiGI ACCGGT 1 cut(s) 609
AspLEI GCGC 4 cut(s) 122, 634, 816, 1291
AspS9I GGNCC 7 cut(s) 462, 595, 672, 1320, 1734, 1745, 1772
AsuC2I CCSGG 2 cut(s) 982, 1649
AsuHPI GGTGA 3 cut(s) 599, 924, 1134
AvaII GGWCC 4 cut(s) 462, 595, 672, 1734
BaeGI GKGCMC 1 cut(s) 1485
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 1649
Bbv12I GWGCWC 1 cut(s) 1485
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 4 cut(s) 480, 598, 795, 1536
BccI CCATC 6 cut(s) 78, 379, 778, 937, 1261, 1576
BceAI ACGGC 2 cut(s) 588, 901
BclI TGATCA 2 cut(s) 1029, 1552
BcnI CCSGG 2 cut(s) 982, 1649
BcoDI GTCTC 2 cut(s) 1057, 1082
BfaI CTAG 5 cut(s) 438, 641, 720, 867, 1742
BfmI CTRYAG 1 cut(s) 144
BglI GCCNNNNNGGC 2 cut(s) 84, 1270
Bme1390I CCNGG 2 cut(s) 982, 1649
Bme18I GGWCC 4 cut(s) 462, 595, 672, 1734
BmgBI CACGTC 4 cut(s) 327, 383, 662, 1035
BmgT120I GGNCC 7 cut(s) 462, 595, 672, 1320, 1734, 1745, 1772
BmiI GGNNCC 3 cut(s) 38, 295, 1646
BmrFI CCNGG 2 cut(s) 982, 1649
BmsI GCATC 2 cut(s) 325, 598
BpmI CTGGAG 1 cut(s) 1625
Bpu10I CCTNAGC 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 2 cut(s) 982, 1649
BsaBI GATNNNNATC 2 cut(s) 579, 1551
BsaHI GRCGYC 1 cut(s) 947
BsaJI CCNNGG 4 cut(s) 82, 779, 1268, 1578
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 3 cut(s) 564, 1317, 1421
Bse118I RCCGGY 6 cut(s) 296, 557, 609, 628, 685, 1462
Bse1I ACTGG 3 cut(s) 436, 1352, 1608
Bse3DI GCAATG 2 cut(s) 1381, 1677
Bse8I GATNNNNATC 2 cut(s) 579, 1551
BseDI CCNNGG 4 cut(s) 82, 779, 1268, 1578
BseGI GGATG 3 cut(s) 10, 526, 1387
BseJI GATNNNNATC 2 cut(s) 579, 1551
BseLI CCNNNNNNNGG 3 cut(s) 564, 1317, 1421
BseMI GCAATG 2 cut(s) 1381, 1677
BseMII CTCAG 3 cut(s) 275, 776, 951
BseNI ACTGG 3 cut(s) 436, 1352, 1608
BseRI GAGGAG 5 cut(s) 82, 85, 792, 1085, 1143
BseSI GKGCMC 1 cut(s) 1485
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 4 cut(s) 480, 598, 795, 1536
Bsh1236I CGCG 5 cut(s) 122, 814, 1270, 1289, 1291
Bsh1285I CGRYCG 3 cut(s) 88, 409, 614
BshFI GGCC 5 cut(s) 87, 557, 1321, 1746, 1773
BshNI GGYRCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 609
BsiEI CGRYCG 3 cut(s) 88, 409, 614
BsiHKAI GWGCWC 1 cut(s) 1485
BsiWI CGTACG 1 cut(s) 707
BslFI GGGAC 2 cut(s) 306, 1502
BslI CCNNNNNNNGG 3 cut(s) 564, 1317, 1421
BsmAI GTCTC 2 cut(s) 1057, 1082
BsmFI GGGAC 2 cut(s) 306, 1502
BsmI GAATGC 3 cut(s) 868, 1396, 1464
BsnI GGCC 5 cut(s) 87, 557, 1321, 1746, 1773
Bsp1286I GDGCHC 2 cut(s) 1485, 1649
BspANI GGCC 5 cut(s) 87, 557, 1321, 1746, 1773
BspCNI CTCAG 3 cut(s) 276, 775, 952
BspFNI CGCG 5 cut(s) 122, 814, 1270, 1289, 1291
BspLI GGNNCC 3 cut(s) 38, 295, 1646
BspPI GGATC 4 cut(s) 528, 697, 752, 1508
BspT107I GGYRCC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 2 cut(s) 1381, 1677
BsrFI RCCGGY 6 cut(s) 296, 557, 609, 628, 685, 1462
BsrI ACTGG 3 cut(s) 436, 1352, 1608
BssAI RCCGGY 6 cut(s) 296, 557, 609, 628, 685, 1462
BssECI CCNNGG 4 cut(s) 82, 779, 1268, 1578
BssNI GRCGYC 1 cut(s) 947
Bst4CI ACNGT 4 cut(s) 528, 906, 1400, 1517
Bst6I CTCTTC 3 cut(s) 3, 103, 266
BstACI GRCGYC 1 cut(s) 947
BstC8I GCNNGC 3 cut(s) 141, 717, 1532
BstDEI CTNAG 3 cut(s) 284, 762, 960
BstDSI CCRYGG 3 cut(s) 779, 1268, 1578
BstF5I GGATG 3 cut(s) 10, 526, 1387
BstFNI CGCG 5 cut(s) 122, 814, 1270, 1289, 1291
BstHHI GCGC 4 cut(s) 122, 634, 816, 1291
BstMAI GTCTC 2 cut(s) 1057, 1082
BstMCI CGRYCG 3 cut(s) 88, 409, 614
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 980, 1647
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 1485
BstUI CGCG 5 cut(s) 122, 814, 1270, 1289, 1291
BstV1I GCAGC 4 cut(s) 480, 598, 795, 1536
BstXI CCANNNNNNTGG 4 cut(s) 33, 387, 842, 942
BstZI CGGCCG 1 cut(s) 85
BsuRI GGCC 5 cut(s) 87, 557, 1321, 1746, 1773
BtgI CCRYGG 3 cut(s) 779, 1268, 1578
BtgZI GCGATG 3 cut(s) 56, 1239, 1554
BtrI CACGTC 4 cut(s) 327, 383, 662, 1035
BtsCI GGATG 3 cut(s) 10, 526, 1387
BtsIMutI CAGTG 4 cut(s) 392, 429, 1405, 1601
Cac8I GCNNGC 3 cut(s) 141, 717, 1532
CfoI GCGC 4 cut(s) 122, 634, 816, 1291
Cfr10I RCCGGY 6 cut(s) 296, 557, 609, 628, 685, 1462
Cfr13I GGNCC 7 cut(s) 462, 595, 672, 1320, 1734, 1745, 1772
Cfr42I CCGCGG 1 cut(s) 1271
CseI GACGC 1 cut(s) 1063
Csp6I GTAC 7 cut(s) 257, 391, 441, 475, 665, 708, 832
CspAI ACCGGT 1 cut(s) 609
CviAII CATG 3 cut(s) 19, 551, 620
CviQI GTAC 7 cut(s) 257, 391, 441, 475, 665, 708, 832
DdeI CTNAG 3 cut(s) 284, 762, 960
EaeI YGGCCR 2 cut(s) 85, 555
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 3 cut(s) 3, 103, 266
EarI CTCTTC 3 cut(s) 3, 103, 266
EciI GGCGGA 7 cut(s) 704, 765, 783, 903, 915, 1122, 1146
EclXI CGGCCG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 1649
Eco47I GGWCC 4 cut(s) 462, 595, 672, 1734
Eco52I CGGCCG 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 1717
EcoT38I GRGCYC 1 cut(s) 1649
FaeI CATG 3 cut(s) 22, 554, 623
FaqI GGGAC 2 cut(s) 306, 1502
FatI CATG 3 cut(s) 18, 550, 619
FauI CCCGC 1 cut(s) 1266
FbaI TGATCA 2 cut(s) 1029, 1552
FokI GGATG 3 cut(s) 17, 533, 1394
FriOI GRGCYC 1 cut(s) 1649
FspBI CTAG 5 cut(s) 438, 641, 720, 867, 1742
GlaI GCGC 4 cut(s) 121, 633, 815, 1290
GsuI CTGGAG 1 cut(s) 1625
HaeIII GGCC 5 cut(s) 87, 557, 1321, 1746, 1773
HgaI GACGC 1 cut(s) 1063
HhaI GCGC 4 cut(s) 122, 634, 816, 1291
Hin1I GRCGYC 1 cut(s) 947
Hin1II CATG 3 cut(s) 22, 554, 623
Hin6I GCGC 4 cut(s) 120, 632, 814, 1289
HinP1I GCGC 4 cut(s) 120, 632, 814, 1289
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 8 cut(s) 50, 236, 497, 575, 1090, 1409, 1559, 1616
HphI GGTGA 3 cut(s) 599, 924, 1134
Hpy166II GTNNAC 6 cut(s) 598, 665, 945, 1483, 1520, 1657
Hpy188I TCNGA 9 cut(s) 49, 285, 406, 411, 574, 580, 757, 1644, 1691
Hpy188III TCNNGA 2 cut(s) 1027, 1556
Hpy8I GTNNAC 6 cut(s) 598, 665, 945, 1483, 1520, 1657
Hpy99I CGWCG 7 cut(s) 545, 672, 952, 1079, 1330, 1333, 1627
HpyAV CCTTC 8 cut(s) 186, 199, 946, 994, 1185, 1684, 1754, 1763
HpyCH4III ACNGT 4 cut(s) 528, 906, 1400, 1517
HpyCH4IV ACGT 9 cut(s) 312, 326, 382, 661, 830, 947, 974, 1034, 1653
HpyCH4V TGCA 2 cut(s) 1483, 1682
HpyF3I CTNAG 3 cut(s) 284, 762, 960
HpySE526I ACGT 9 cut(s) 312, 326, 382, 661, 830, 947, 974, 1034, 1653
Hsp92I GRCGYC 1 cut(s) 947
Hsp92II CATG 3 cut(s) 22, 554, 623
HspAI GCGC 4 cut(s) 120, 632, 814, 1289
Ksp22I TGATCA 2 cut(s) 1029, 1552
KspI CCGCGG 1 cut(s) 1271
LmnI GCTCC 6 cut(s) 42, 95, 119, 712, 916, 1644
Lsp1109I GCAGC 4 cut(s) 480, 598, 795, 1536
LweI GCATC 2 cut(s) 325, 598
MaeI CTAG 5 cut(s) 438, 641, 720, 867, 1742
MaeII ACGT 9 cut(s) 312, 326, 382, 661, 830, 947, 974, 1034, 1653
MaeIII GTNAC 5 cut(s) 605, 869, 918, 1276, 1778
MbiI CCGCTC 1 cut(s) 90
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 1485, 1649
MlyI GAGTC 4 cut(s) 44, 1084, 1418, 1625
MmeI TCCRAC 5 cut(s) 72, 90, 1236, 1622, 1686
MseI TTAA 1 cut(s) 1040
MslI CAYNNNNRTG 2 cut(s) 385, 940
MspA1I CMGCKG 4 cut(s) 808, 940, 1270, 1527
MspR9I CCNGG 2 cut(s) 982, 1649
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 3 cut(s) 868, 1396, 1464
MvnI CGCG 5 cut(s) 122, 814, 1270, 1289, 1291
NciI CCSGG 2 cut(s) 982, 1649
NlaIII CATG 3 cut(s) 22, 554, 623
NlaIV GGNNCC 3 cut(s) 38, 295, 1646
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 3 cut(s) 605, 869, 1276
NspI RCATGY 1 cut(s) 22
OliI CACNNNNGTG 2 cut(s) 385, 940
PciI ACATGT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 3 cut(s) 868, 1396, 1464
PfeI GAWTC 4 cut(s) 236, 497, 575, 1559
Pfl23II CGTACG 1 cut(s) 707
PflMI CCANNNNNTGG 1 cut(s) 1421
PinAI ACCGGT 1 cut(s) 609
Ple19I CGATCG 1 cut(s) 409
PleI GAGTC 4 cut(s) 44, 1084, 1417, 1624
PpsI GAGTC 4 cut(s) 44, 1084, 1417, 1624
PscI ACATGT 1 cut(s) 18
Psp1406I AACGTT 1 cut(s) 312
PspLI CGTACG 1 cut(s) 707
PspN4I GGNNCC 3 cut(s) 38, 295, 1646
PspPI GGNCC 7 cut(s) 462, 595, 672, 1320, 1734, 1745, 1772
PvuI CGATCG 1 cut(s) 409
RsaI GTAC 7 cut(s) 258, 392, 442, 476, 666, 709, 833
RsaNI GTAC 7 cut(s) 257, 391, 441, 475, 665, 708, 832
RseI CAYNNNNRTG 2 cut(s) 385, 940
SacII CCGCGG 1 cut(s) 1271
SaqAI TTAA 1 cut(s) 1040
Sau96I GGNCC 7 cut(s) 462, 595, 672, 1320, 1734, 1745, 1772
SchI GAGTC 4 cut(s) 44, 1084, 1418, 1625
ScrFI CCNGG 2 cut(s) 982, 1649
SduI GDGCHC 2 cut(s) 1485, 1649
SfaNI GCATC 2 cut(s) 325, 598
SfcI CTRYAG 1 cut(s) 144
Sfr303I CCGCGG 1 cut(s) 1271
SgrBI CCGCGG 1 cut(s) 1271
SinI GGWCC 4 cut(s) 462, 595, 672, 1734
SmiMI CAYNNNNRTG 2 cut(s) 385, 940
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SspMI CTAG 5 cut(s) 438, 641, 720, 867, 1742
StyD4I CCNGG 2 cut(s) 980, 1647
TaaI ACNGT 4 cut(s) 528, 906, 1400, 1517
TaiI ACGT 9 cut(s) 315, 329, 385, 664, 833, 950, 977, 1037, 1656
TaqI TCGA 4 cut(s) 860, 950, 1077, 1298
TfiI GAWTC 4 cut(s) 236, 497, 575, 1559
Tru1I TTAA 1 cut(s) 1040
Tru9I TTAA 1 cut(s) 1040
TscAI CASTG 4 cut(s) 392, 436, 1405, 1608
TseFI GTSAC 3 cut(s) 605, 869, 1276
TseI GCWGC 4 cut(s) 468, 586, 808, 1524
Tsp45I GTSAC 3 cut(s) 605, 869, 1276
TspDTI ATGAA 9 cut(s) 21, 115, 157, 461, 537, 636, 1484, 1666, 1730
TspGWI ACGGA 5 cut(s) 685, 695, 725, 796, 1595
TspRI CASTG 4 cut(s) 392, 436, 1405, 1608
Van91I CCANNNNNTGG 1 cut(s) 1421
VneI GTGCAC 1 cut(s) 1481
VpaK11BI GGWCC 4 cut(s) 462, 595, 672, 1734
XapI RAATTY 6 cut(s) 201, 738, 891, 1081, 1717, 1750
XceI RCATGY 1 cut(s) 22
XspI CTAG 5 cut(s) 438, 641, 720, 867, 1742
ZraI GACGTC 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.