Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014350

Physical Location & Seq

Genomic Coordinates Forward (+)

27598033 .. 27600281

Gene Structure 2249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGATGCGAAGACTCGTCTCTTACTTTGTTCGTTCTAGATTCTCCTTGCATCTATCCACAACACCACCTCAAAGGTCCGCACTTTTCTCTCATATATTGAGTTCTCATCTAGATTCTATTCAAATCAACAAAAAAATCTCATCTTTCTCTGTGCATCGATTCTGTTCCACGACTTTGTTAAACCCAGAACTAGAAATTACCCGTATAGAGAAAGTTTCCGAAGATCAATCATTGGTTTATTGCAATGAAAATGATATTAGAACAAAGGGTTCTAATCATGCGGTTGGAATCTTACACGAAGCTATAATGGCGAATTTGAATGCGTATGATGATATGGAAAAAGCCCTTGATGAATCTAGTGTAGATTTAACAACTCCTGTGGTGTGTAAGATCTTACAAAGGCTTCAATACGAAGAAAAGACGGCTTTTCGGTTCTTCACTTGGGCTGGACATCAAGAACATTACTCACATGAGCCTATTGCTTATAATGAGATGATTGATATATTGTCAAGTACTAAGTATAAGAATAAGCAGTTTAGGATTGTGATTGATATGCTTGATTACATGAAGAGAAACAACAAAACCGTTGTTCTTGTTGATGTTCTATTGGAGATTCTCAGGAAGTATTGTGAGAGGTACTTGACTCATGTTCAGAAATTTGCCAAGAGGAAACGGATTAGAGTGAAGACGCAGCCTGAGATTAATGCTTTCAATATGCTTCTTGATGCTCTGTGTAAGTGTGGTTTGGTTAAGGAGGGTGAAGCTTTGCTTAGAAGGATGAGGCATAGAGTTAAACCTGATGCGAATACGTTTAATGTCTTGTTCTTTGGGTGGTGTAGGGTGAGAGACCCTAAAAAGGCAATGAAGCTGCTTGAAGAGATGATTGAAGCTGGACATAAGCCGGAAAATTTCACTTATTGTGCTGCTATTGATACTTTCTGTCAAGCTGGAATGGTGGATGAGGCAGCTGATTTGTTTGACTTTATGATAACCAAAGGCTCTGCTGTTTCTGCTCCAACCGCAAAGACTTTTGCTTTAATGATTGTGGCGTTGGCAAAGAATGATAAGGCAGAAGAATGCTTTGAGCTAATTGGGCGTATGATAAGCACGGGTTGCCTTCCTGATGTCTCGACATATAAGGATGTAATTGAAGGTATGTGTATGGCTGAAAAGGTAGATGAAGCGTACAAGTTCCTGGATGAGATGAGTAATAAAGGTTACCCGCCTGATATAGTCACATACAATTGCTTTCTTAGGGTATTGTGTGAGAATAGAAAGACCGATGAAGCACTTAAACTTTATGGAAGAATGGTAGAGTCGCGTTGTGCTCCTAGCGTCCAAACATACAACATGCTGATATCTATGTTTTTCGAAATGGATGATCCTGATGGAGCATTCAATACATGGACTGAAATGGATAAAAGAGACTGTGTTCAGGACGTTGAAACATACTGTGCTATGATCAATGGGCTTTTCGACTGTCACAGAGCTAAAGAGGCGTGTTTTCTACTGGAAGAGGTTGTGAACAAAGGACTCAAACTGCCATATCGAGTGTTTGACTCTTTCTTGATGCGTCTATCGGAAGTTGGTAACCTCAAGGCAATTCATAAGGTTTCTGAACATATGAAAAAGTTTTACAACCATAGTATGGCTAGGCGTTTTGCACTCAGTGAGAAGAGAAAGAGTACAAAACTCAGAGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

568

Amino Acids

65.68

Weight (kDa)

8.46

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	233 - 280	4.6e-08	PPR repeat family
PPR_2	PF13041	266 - 315	1.3e-10	PPR repeat family
PPR_1	PF12854	298 - 329	3.6e-08	PPR repeat
PPR_long	PF17177	324 - 420	6.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	340 - 387	2.8e-06	PPR repeat family
TPR_24	PF23276	344 - 436	7.6e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	371 - 403	1.8e-09	PPR repeat
PPR_2	PF13041	382 - 422	6.9e-11	PPR repeat family
PPR_3	PF13812	398 - 456	4.6e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	405 - 438	2e-07	PPR repeat
PPR_2	PF13041	409 - 456	8.5e-15	PPR repeat family
PPR	PF01535	412 - 442	2.7e-06	PPR repeat
PPR_2	PF13041	444 - 492	5.3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73400
fragaria_vesca	FvH4_5g17981
malus_domestica	MD14G1242500.v1.1
prunus_persica	Prupe.5G240200_v2.0.a1
pyrus_communis	pycom06g21040 pycom06g21050
rosa_chinensis	RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata	RLG00000005521
rosa_multiflora	Rmu_ssc0000330.1_g000014
rosa_rugosa	Rorug06G0407800
rosa_samantha	Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana	Rw7G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	1648
AccII	CGCG	1 cut(s)	1321
AciI	CCGC	4 cut(s)	78, 281, 1020, 1223
AclWI	GGATC	1 cut(s)	1376
AcsI	RAATTY	3 cut(s)	313, 656, 907
AdeI	CACNNNGTG	1 cut(s)	1670
AfaI	GTAC	4 cut(s)	514, 638, 1187, 1687
AfiI	CCNNNNNNNGG	2 cut(s)	856, 1648
AgsI	TTSAA	9 cut(s)	122, 319, 407, 712, 875, 887, 1151, 1399, 1445
AjnI	CCWGG	1 cut(s)	1194
AluBI	AGCT	8 cut(s)	302, 764, 868, 890, 947, 968, 1087, 1490
AluI	AGCT	8 cut(s)	302, 764, 868, 890, 947, 968, 1087, 1490
Alw21I	GWGCWC	1 cut(s)	1330
Alw26I	GTCTC	4 cut(s)	22, 840, 1132, 1419
AlwI	GGATC	1 cut(s)	1376
ApeKI	GCWGC	4 cut(s)	691, 868, 923, 965
ApoI	RAATTY	3 cut(s)	313, 656, 907
AseI	ATTAAT	1 cut(s)	702
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	770, 853
AsuII	TTCGAA	1 cut(s)	1371
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	16, 692
Bbv12I	GWGCWC	1 cut(s)	1330
BbvI	GCAGC	4 cut(s)	703, 855, 910, 977
BccI	CCATC	1 cut(s)	1382
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	1196
BclI	TGATCA	1 cut(s)	1461
BcoDI	GTCTC	4 cut(s)	22, 840, 1132, 1419
BfaI	CTAG	6 cut(s)	36, 110, 191, 357, 1332, 1653
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	4 cut(s)	692, 869, 924, 966
BlsI	GCNGC	4 cut(s)	693, 870, 925, 967
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	1196
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	1196
BmsI	GCATC	5 cut(s)	58, 163, 715, 790, 1560
BpiI	GAAGAC	2 cut(s)	16, 692
Bpu14I	TTCGAA	1 cut(s)	1371
BpuEI	CTTGAG	1 cut(s)	1580
Bsa29I	ATCGAT	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	840
Bsc4I	CCNNNNNNNGG	2 cut(s)	856, 1648
Bse1I	ACTGG	1 cut(s)	1515
Bse3DI	GCAATG	2 cut(s)	250, 867
BseBI	CCWGG	1 cut(s)	1196
BseCI	ATCGAT	1 cut(s)	157
BseGI	GGATG	5 cut(s)	783, 964, 1147, 1204, 1384
BseLI	CCNNNNNNNGG	2 cut(s)	856, 1648
BseMI	GCAATG	2 cut(s)	250, 867
BseMII	CTCAG	3 cut(s)	631, 687, 1681
BseNI	ACTGG	1 cut(s)	1515
BseXI	GCAGC	4 cut(s)	703, 855, 910, 977
Bsh1236I	CGCG	1 cut(s)	1321
BshVI	ATCGAT	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	1330
BsiSI	CCGG	1 cut(s)	902
BslI	CCNNNNNNNGG	2 cut(s)	856, 1648
BsmAI	GTCTC	4 cut(s)	22, 840, 1132, 1419
BsmBI	CGTCTC	1 cut(s)	22
BsmI	GAATGC	3 cut(s)	325, 1082, 1394
Bso31I	GGTCTC	1 cut(s)	840
Bsp119I	TTCGAA	1 cut(s)	1371
Bsp1286I	GDGCHC	1 cut(s)	1330
Bsp143I	GATC	4 cut(s)	223, 390, 1381, 1461
BspACI	CCGC	4 cut(s)	78, 281, 1020, 1223
BspCNI	CTCAG	4 cut(s)	630, 688, 1680, 1707
BspDI	ATCGAT	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	1321
BspPI	GGATC	1 cut(s)	1376
BspT104I	TTCGAA	1 cut(s)	1371
BspTNI	GGTCTC	1 cut(s)	840
BsrDI	GCAATG	2 cut(s)	250, 867
BsrI	ACTGG	1 cut(s)	1515
BssMI	GATC	4 cut(s)	223, 390, 1381, 1461
Bst2UI	CCWGG	1 cut(s)	1196
Bst4CI	ACNGT	4 cut(s)	586, 1430, 1454, 1481
Bst6I	CTCTTC	4 cut(s)	563, 870, 1509, 1670
BstAPI	GCANNNNNTGC	1 cut(s)	1113
BstBI	TTCGAA	1 cut(s)	1371
BstDEI	CTNAG	7 cut(s)	516, 617, 696, 770, 1253, 1667, 1694
BstEII	GGTNACC	2 cut(s)	1217, 1589
BstF5I	GGATG	5 cut(s)	783, 964, 1147, 1204, 1384
BstFNI	CGCG	1 cut(s)	1321
BstKTI	GATC	4 cut(s)	226, 393, 1384, 1464
BstMAI	GTCTC	4 cut(s)	22, 840, 1132, 1419
BstMBI	GATC	4 cut(s)	223, 390, 1381, 1461
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 1010, 1019, 1093, 1113, 1496
BstNI	CCWGG	1 cut(s)	1196
BstNSI	RCATGY	1 cut(s)	1354
BstPI	GGTNACC	2 cut(s)	1217, 1589
BstSCI	CCNGG	1 cut(s)	1194
BstUI	CGCG	1 cut(s)	1321
BstV1I	GCAGC	4 cut(s)	703, 855, 910, 977
BstV2I	GAAGAC	2 cut(s)	16, 692
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	157
BtsCI	GGATG	5 cut(s)	783, 964, 1147, 1204, 1384
BtsIMutI	CAGTG	1 cut(s)	1675
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	157
CseI	GACGC	3 cut(s)	697, 1324, 1562
Csp6I	GTAC	4 cut(s)	513, 637, 1186, 1686
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	6 cut(s)	278, 470, 565, 647, 1351, 1404
CviQI	GTAC	4 cut(s)	513, 637, 1186, 1686
DdeI	CTNAG	7 cut(s)	516, 617, 696, 770, 1253, 1667, 1694
DpnI	GATC	4 cut(s)	225, 392, 1383, 1463
DpnII	GATC	4 cut(s)	223, 390, 1381, 1461
DraIII	CACNNNGTG	1 cut(s)	1670
Eam1104I	CTCTTC	4 cut(s)	563, 870, 1509, 1670
EarI	CTCTTC	4 cut(s)	563, 870, 1509, 1670
Eco31I	GGTCTC	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	1359
Eco47I	GGWCC	1 cut(s)	75
Eco91I	GGTNACC	2 cut(s)	1217, 1589
EcoO65I	GGTNACC	2 cut(s)	1217, 1589
EcoRII	CCWGG	1 cut(s)	1194
EcoRV	GATATC	1 cut(s)	1359
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	6 cut(s)	281, 473, 568, 650, 1354, 1407
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FatI	CATG	6 cut(s)	277, 469, 564, 646, 1350, 1403
FauI	CCCGC	1 cut(s)	1230
FauNDI	CATATG	1 cut(s)	1623
FbaI	TGATCA	1 cut(s)	1461
Fnu4HI	GCNGC	4 cut(s)	692, 869, 924, 966
FokI	GGATG	5 cut(s)	790, 971, 1154, 1211, 1391
Fsp4HI	GCNGC	4 cut(s)	692, 869, 924, 966
FspBI	CTAG	6 cut(s)	36, 110, 191, 357, 1332, 1653
GluI	GCNGC	4 cut(s)	692, 869, 924, 966
HapII	CCGG	1 cut(s)	902
HgaI	GACGC	3 cut(s)	697, 1324, 1562
Hin1II	CATG	6 cut(s)	281, 473, 568, 650, 1354, 1407
HindIII	AAGCTT	1 cut(s)	762
HpaII	CCGG	1 cut(s)	902
HphI	GGTGA	2 cut(s)	770, 853
Hpy166II	GTNNAC	1 cut(s)	1525
Hpy188I	TCNGA	5 cut(s)	220, 654, 1582, 1618, 1697
Hpy8I	GTNNAC	1 cut(s)	1525
HpyAV	CCTTC	3 cut(s)	768, 1127, 1145
HpyCH4III	ACNGT	4 cut(s)	586, 1430, 1454, 1481
HpyCH4IV	ACGT	2 cut(s)	809, 1440
HpyCH4V	TGCA	4 cut(s)	49, 154, 243, 1664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 1010, 1019, 1093, 1113, 1496
HpyF3I	CTNAG	7 cut(s)	516, 617, 696, 770, 1253, 1667, 1694
HpySE526I	ACGT	2 cut(s)	809, 1440
Hsp92II	CATG	6 cut(s)	281, 473, 568, 650, 1354, 1407
Ksp22I	TGATCA	1 cut(s)	1461
Kzo9I	GATC	4 cut(s)	223, 390, 1381, 1461
LmnI	GCTCC	3 cut(s)	1018, 1333, 1391
Lsp1109I	GCAGC	4 cut(s)	703, 855, 910, 977
LweI	GCATC	5 cut(s)	58, 163, 715, 790, 1560
MaeI	CTAG	6 cut(s)	36, 110, 191, 357, 1332, 1653
MaeII	ACGT	2 cut(s)	809, 1440
MaeIII	GTNAC	4 cut(s)	1217, 1234, 1481, 1589
MalI	GATC	4 cut(s)	225, 392, 1383, 1463
MboI	GATC	4 cut(s)	223, 390, 1381, 1461
MfeI	CAATTG	1 cut(s)	1243
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	1330
MluCI	AATT	8 cut(s)	195, 313, 656, 907, 1089, 1146, 1243, 1602
MlyI	GAGTC	5 cut(s)	6, 637, 1325, 1527, 1553
MmeI	TCCRAC	2 cut(s)	265, 1040
MseI	TTAA	8 cut(s)	179, 368, 702, 750, 792, 813, 1037, 1293
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	1 cut(s)	902
MspR9I	CCNGG	1 cut(s)	1196
MunI	CAATTG	1 cut(s)	1243
Mva1269I	GAATGC	3 cut(s)	325, 1082, 1394
MvaI	CCWGG	1 cut(s)	1196
MvnI	CGCG	1 cut(s)	1321
MwoI	GCNNNNNNNGC	6 cut(s)	308, 1010, 1019, 1093, 1113, 1496
NdeI	CATATG	1 cut(s)	1623
NdeII	GATC	4 cut(s)	223, 390, 1381, 1461
NlaIII	CATG	6 cut(s)	281, 473, 568, 650, 1354, 1407
NmuCI	GTSAC	2 cut(s)	1234, 1481
NspI	RCATGY	1 cut(s)	1354
NspV	TTCGAA	1 cut(s)	1371
PctI	GAATGC	3 cut(s)	325, 1082, 1394
PfeI	GAWTC	6 cut(s)	39, 113, 159, 288, 353, 613
PflMI	CCANNNNNTGG	1 cut(s)	1648
PfoI	TCCNGGA	1 cut(s)	1194
PkrI	GCNGC	4 cut(s)	693, 870, 925, 967
PleI	GAGTC	5 cut(s)	6, 637, 1324, 1527, 1553
PpsI	GAGTC	5 cut(s)	6, 637, 1324, 1527, 1553
PshBI	ATTAAT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	1194
PspEI	GGTNACC	2 cut(s)	1217, 1589
PspGI	CCWGG	1 cut(s)	1194
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	4 cut(s)	514, 638, 1187, 1687
RsaNI	GTAC	4 cut(s)	513, 637, 1186, 1686
SaqAI	TTAA	8 cut(s)	179, 368, 702, 750, 792, 813, 1037, 1293
SatI	GCNGC	4 cut(s)	692, 869, 924, 966
Sau3AI	GATC	4 cut(s)	223, 390, 1381, 1461
Sau96I	GGNCC	1 cut(s)	75
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	5 cut(s)	6, 637, 1325, 1527, 1553
ScrFI	CCNGG	1 cut(s)	1196
SduI	GDGCHC	1 cut(s)	1330
SfaNI	GCATC	5 cut(s)	58, 163, 715, 790, 1560
SfuI	TTCGAA	1 cut(s)	1371
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	1595
SmoI	CTYRAG	1 cut(s)	1595
Sse9I	AATT	8 cut(s)	195, 313, 656, 907, 1089, 1146, 1243, 1602
SsiI	CCGC	4 cut(s)	78, 281, 1020, 1223
SspMI	CTAG	6 cut(s)	36, 110, 191, 357, 1332, 1653
StyD4I	CCNGG	1 cut(s)	1194
TaaI	ACNGT	4 cut(s)	586, 1430, 1454, 1481
TaiI	ACGT	2 cut(s)	812, 1443
TaqI	TCGA	5 cut(s)	157, 1130, 1371, 1476, 1549
TaqII	GACCGA	1 cut(s)	1295
TasI	AATT	8 cut(s)	195, 313, 656, 907, 1089, 1146, 1243, 1602
TatI	WGTACW	2 cut(s)	512, 1685
TfiI	GAWTC	6 cut(s)	39, 113, 159, 288, 353, 613
Tru1I	TTAA	8 cut(s)	179, 368, 702, 750, 792, 813, 1037, 1293
Tru9I	TTAA	8 cut(s)	179, 368, 702, 750, 792, 813, 1037, 1293
TscAI	CASTG	1 cut(s)	1675
TseFI	GTSAC	2 cut(s)	1234, 1481
TseI	GCWGC	4 cut(s)	691, 868, 923, 965
Tsp45I	GTSAC	2 cut(s)	1234, 1481
TspDTI	ATGAA	8 cut(s)	261, 366, 581, 878, 1194, 1299, 1595, 1640
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	1 cut(s)	1675
Van91I	CCANNNNNTGG	1 cut(s)	1648
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	3 cut(s)	313, 656, 907
XbaI	TCTAGA	2 cut(s)	35, 109
XceI	RCATGY	1 cut(s)	1354
XspI	CTAG	6 cut(s)	36, 110, 191, 357, 1332, 1653
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.