Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014350

Physical Location & Seq

Genomic Coordinates Forward (+)

622776 .. 623540

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCGCAATCGATCTCTTACAACTTCTATTGCTTCCTTGAGAAGCCTATGCTTCGCCCAGAGGCCTGTGTCTTATGTTATATATGAATATGCTAGGCCCCCAATCGAACCCATCTCGCATCTTCCAAAATACAACCCATTATTCCCATGTTTACCCGCCCCTTCTTCCAATTTGTTCAAATTAGCGCAACCCTCTCTGCGTCTTTTTTGTTCGGAGAGTGTTACAGTGGGTCAAAGTTTTGAATGTGTTGGGAGTGGTAATGCTTTAGAAGGTGATGTCGATAAGCTTTTCGAGATTATTATGGATCATGCCCAGCCACATTGTGATATGGAGAAAGCTCTCAACCTAGCTGGTGTACCATTGACTACTGATTTGGTTGTTCAGGTGCTTCATAGGTTTCGTTTCGAGGAGAAACTTGCTTTTAGGTTTTTCATGTGGGCGGGCCAAAAGGAAAACTATGATCATGAAGCTCAGGCGTATAATGAGATGATTGATATATTGTCGTGTACCAAGTACAAGGTGAAGCAGTTCCGAATTGTTTGTGATTTACTGGATTATATGAAGAGGCATAACAAGAGTAAGGTTCCTGTTGAGGTTCTCATAACAATTTTGAAGCAGTACACGGAGAAGCATCTGACCTATCTGCAGAAATTTGCCAAGAAGAAGAAGATAAGGGTGAAGACGCAGCCGGAGATCAATGCCTTGAACTTTCTATTGGATGCCCTGTGCAAGTGCAGTCTTGTACAGGATGCCGAACTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

254

Amino Acids

29.23

Weight (kDa)

8.72

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73400
fragaria_vesca	FvH4_5g17981
malus_domestica	MD14G1242500.v1.1
prunus_persica	Prupe.5G240200_v2.0.a1
pyrus_communis	pycom06g21040 pycom06g21050
rosa_chinensis	RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata	RLG00000005521
rosa_multiflora	Rmu_ssc0000330.1_g000014
rosa_rugosa	Rorug06G0407800
rosa_samantha	Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana	Rw7G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	2 cut(s)	156, 440
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	5 cut(s)	357, 508, 515, 620, 744
AgsI	TTSAA	4 cut(s)	178, 242, 613, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	4 cut(s)	286, 338, 350, 470
AluI	AGCT	4 cut(s)	286, 338, 350, 470
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	3 cut(s)	62, 95, 442
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	1 cut(s)	650
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	6, 187
AspS9I	GGNCC	2 cut(s)	96, 442
AsuHPI	GGTGA	3 cut(s)	284, 532, 688
BbsI	GAAGAC	1 cut(s)	686
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	460
BfaI	CTAG	2 cut(s)	93, 347
BfmI	CTRYAG	1 cut(s)	644
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
BmgT120I	GGNCC	2 cut(s)	96, 442
BmiI	GGNNCC	2 cut(s)	98, 585
BmsI	GCATC	4 cut(s)	127, 640, 709, 739
BpiI	GAAGAC	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	555
BseCI	ATCGAT	1 cut(s)	10
BseGI	GGATG	2 cut(s)	724, 754
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	754
BshFI	GGCC	3 cut(s)	64, 97, 444
BshVI	ATCGAT	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	689
BsnI	GGCC	3 cut(s)	64, 97, 444
Bsp1407I	TGTACA	1 cut(s)	742
Bsp143I	GATC	4 cut(s)	11, 304, 460, 693
BspACI	CCGC	2 cut(s)	156, 440
BspANI	GGCC	3 cut(s)	64, 97, 444
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	98, 585
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	742
BsrI	ACTGG	1 cut(s)	555
BssMI	GATC	4 cut(s)	11, 304, 460, 693
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	724, 754
BstHHI	GCGC	2 cut(s)	6, 187
BstKTI	GATC	4 cut(s)	14, 307, 463, 696
BstMBI	GATC	4 cut(s)	11, 304, 460, 693
BstSFI	CTRYAG	1 cut(s)	644
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	686
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	64, 97, 444
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	724, 754
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	442
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	6, 187
Cfr13I	GGNCC	2 cut(s)	96, 442
ClaI	ATCGAT	1 cut(s)	10
CseI	GACGC	2 cut(s)	188, 691
Csp6I	GTAC	5 cut(s)	356, 507, 514, 619, 743
CviAII	CATG	4 cut(s)	147, 308, 433, 464
CviQI	GTAC	5 cut(s)	356, 507, 514, 619, 743
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	4 cut(s)	13, 306, 462, 695
DpnII	GATC	4 cut(s)	11, 304, 460, 693
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
Eco147I	AGGCCT	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	96
FaeI	CATG	4 cut(s)	150, 311, 436, 467
FatI	CATG	4 cut(s)	146, 307, 432, 463
FauI	CCCGC	2 cut(s)	163, 433
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	1 cut(s)	686
FokI	GGATG	2 cut(s)	731, 761
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	2 cut(s)	93, 347
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 186
GluI	GCNGC	1 cut(s)	686
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	64, 97, 444
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	2 cut(s)	188, 691
HhaI	GCGC	2 cut(s)	6, 187
Hin1II	CATG	4 cut(s)	150, 311, 436, 467
Hin6I	GCGC	2 cut(s)	4, 185
HinP1I	GCGC	2 cut(s)	4, 185
HindIII	AAGCTT	1 cut(s)	284
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	3 cut(s)	284, 532, 688
Hpy166II	GTNNAC	4 cut(s)	152, 356, 507, 621
Hpy188I	TCNGA	3 cut(s)	214, 533, 636
Hpy188III	TCNNGA	2 cut(s)	292, 464
Hpy8I	GTNNAC	4 cut(s)	152, 356, 507, 621
HpyAV	CCTTC	2 cut(s)	171, 263
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	646, 729, 735
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	150, 311, 436, 467
HspAI	GCGC	2 cut(s)	4, 185
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	11, 304, 460, 693
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	4 cut(s)	127, 640, 709, 739
MaeI	CTAG	2 cut(s)	93, 347
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	4 cut(s)	13, 306, 462, 695
MboI	GATC	4 cut(s)	11, 304, 460, 693
MboII	GAAGA	7 cut(s)	113, 156, 574, 673, 676, 679, 691
MluCI	AATT	5 cut(s)	169, 179, 534, 606, 650
MnlI	CCTC	5 cut(s)	54, 202, 400, 558, 586
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	1 cut(s)	763
MspI	CCGG	1 cut(s)	689
NdeII	GATC	4 cut(s)	11, 304, 460, 693
NlaIII	CATG	4 cut(s)	150, 311, 436, 467
NlaIV	GGNNCC	2 cut(s)	98, 585
NsbI	TGCGCA	1 cut(s)	5
PagI	TCATGA	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	527
PkrI	GCNGC	1 cut(s)	687
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	98, 585
PspPI	GGNCC	2 cut(s)	96, 442
PstI	CTGCAG	1 cut(s)	648
RsaI	GTAC	5 cut(s)	357, 508, 515, 620, 744
RsaNI	GTAC	5 cut(s)	356, 507, 514, 619, 743
SaqAI	TTAA	1 cut(s)	763
SatI	GCNGC	1 cut(s)	686
Sau3AI	GATC	4 cut(s)	11, 304, 460, 693
Sau96I	GGNCC	2 cut(s)	96, 442
SfaNI	GCATC	4 cut(s)	127, 640, 709, 739
SfcI	CTRYAG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	5 cut(s)	169, 179, 534, 606, 650
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	156, 440
SspMI	CTAG	2 cut(s)	93, 347
StuI	AGGCCT	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	5 cut(s)	10, 105, 279, 291, 405
TasI	AATT	5 cut(s)	169, 179, 534, 606, 650
TatI	WGTACW	3 cut(s)	513, 618, 742
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	685
TspDTI	ATGAA	5 cut(s)	99, 380, 421, 480, 575
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	2 cut(s)	93, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.