RLG00000005521

Pentatricopeptide repeat-containing protein At1g73400

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
68278940 .. 68280640
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005521

Sequence Viewer

Length: 1701 bp
ATGCGCAATCGATCTCTTACAACTTCTATTGCTTCCTTGAGACGCCTATGCTTCGCCCAGAGGCCTGTGTCTTATACATATGAATATGTTAGGCCCCCAATCGAATCCATCTTGCATCTTCCAAAATACAACCTATTATTCCCATGTTTACCCGCCCCTTGTTCCAATTTGTTCAAATTAGCGCAACCCTCTATGCGTCTTTTTTGTTCGGAGAGTGTTACAGTGGGTCAAAGTTTTGAATGTGTTGGGAGAGGTAATGCTTTAGAAGGTGATGTCGATGAGCTGCTTTTCGAGATTATTATGGATAATGCCCAGCCACATTGTGGTATGGAGAAAGCTCTCGACCGAGCTGGTGTACCATTGACTACTGATTTGGTTGTTCGGGTGCTGCATAGGTTTCGTTTCGAGGAGAAACTAGCTTTTAGGTTTTTCATGTGGGCGGGCCAAAAGGAAGACTATGATCATGAAGCTCAGGCGTATAATGAGATGATTGATATATTGTCGAGTACCAAGTACAAGGTGAAGCAGTTTCGAATTGTTTGTGATTTACTGGATTATATGAAGAGGCATAACAAGAGTAAGGTTCCTGTTGAGGTTCTCATAACAATTTTGAAGCAGTACACGGAGAAGCATCTGACCTATCTGCACAAATTTGCCAAGAAGAAGAAGATAAGGGTGAAGACGCAGCCGGAGATCAATGCCTTGAACTTTCTATTGGATGCCCTGTGCAAGTGCAGTCTTGTACAGGATGCCGAACTGATGTTAAAGAGGGTGAAGAAAAATATCAAGCCTGATGCGAATACATACAACATTTTGTTTTTCGGTTGGTGTAGAGTTAGGAATCCGAGTAGAGGAATGAGGTTACTGGAAGAGATGATCGAAGTGGGTCACACGCCTGATAATTTCACTTATACTACTGCCATTGATGCCTTTTGCAAAGCAGGGATGGTTACCGAGGCAGCTGAACTTTTTGAGTTCATGCGAACAAAAGGTTCTACAATTTCTTCTCCTACTGCAAAAACTTATGCAATCATGATTGTGGCGCTTGTGGAGAATGGCAGAATGGAGGAGTGCTTCAAACTTCTGGGACATATGATAAGTAGTGGCTGCCTTCCTGATGTTTCTACATACAAGGAACTACTCGAAGGGATGTGTTTGGCTGGAAAGGTCGAGGAGGCCTACAAGTTCTTGCAGGAGATGGGAAACAAAGGTTACCCTCCTGATATAGTTACTTATAATTGTTTTCTAAAGGTGCTGTGTGAGAATAAAAAGGGTGATGAAGCACTGAAGCTTTACGGAAGAATGATAGATATAGGTTGTATGCCTAGTGTGCAGACTTATAATATGTTGATTTCAATGTACTTTGAGATGGGGGATCCTGATGGGGCATTTGAGACTTGGCATGAGATGGATAAGAGGGGCTGTGCACAGGACACTGATACTTATTGCATGATGATTGAAGGGCTTTTCGGTTGCAATAAAGTGGAAGATGCGTGTTGTCTCTTGGAGGATGTGGTGAACAAGGGAATGAAATTGCCATATACCAAGTTTGACTCCTTTCTAATGCAGCTTTCTGTGATTGGTGATCTTCAAGCCATCCACAGACTTTCGGAGCATATGAGAAGGTTCTATAATCCTTCTATGGCAAGACGCTTTGCATTGAACCAGAAGCGGAGGAGCATTAGTATGAGGGAGCACTAA

Protein Analysis

567

Amino Acids

65.14

Weight (kDa)

8.32

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 232 - 278 1.6e-07 PPR repeat family
PPR_long PF17177 242 - 400 1.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 268 - 313 1e-10 PPR repeat family
PPR_1 PF12854 296 - 328 4.9e-11 PPR repeat
PPR PF01535 302 - 331 2.7e-07 PPR repeat
PPR_2 PF13041 303 - 349 1.7e-07 PPR repeat family
PPR_2 PF13041 337 - 385 4.5e-10 PPR repeat family
TPR_24 PF23276 342 - 434 3.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 361 - 420 1.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 369 - 400 1.3e-09 PPR repeat
PPR_2 PF13041 372 - 420 3.4e-13 PPR repeat family
PPR_3 PF13812 397 - 454 5.5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 403 - 435 3e-06 PPR repeat
PPR_2 PF13041 407 - 452 1.7e-13 PPR repeat family
PPR PF01535 410 - 440 5.6e-06 PPR repeat
PPR_1 PF12854 439 - 470 2e-06 PPR repeat
PPR_2 PF13041 442 - 489 1.7e-13 PPR repeat family
PPR PF01535 446 - 475 3.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014350)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1236, 1341
Acc16I TGCGCA 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 3 cut(s) 153, 440, 1672
AclWI GGATC 2 cut(s) 1370, 1383
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 1307
AcyI GRCGYC 1 cut(s) 43
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 6 cut(s) 357, 508, 515, 620, 744, 1361
AfiI CCNNNNNNNGG 2 cut(s) 323, 851
AgsI TTSAA 9 cut(s) 175, 239, 613, 706, 1078, 1356, 1460, 1592, 1663
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 8 cut(s) 283, 338, 350, 419, 470, 962, 1291, 1570
AluI AGCT 8 cut(s) 283, 338, 350, 419, 470, 962, 1291, 1570
Alw21I GWGCWC 2 cut(s) 1429, 1698
Alw26I GTCTC 3 cut(s) 34, 1388, 1505
Alw44I GTGCAC 1 cut(s) 1425
AlwI GGATC 2 cut(s) 1370, 1383
AoxI GGCC 4 cut(s) 62, 92, 442, 1176
ApaLI GTGCAC 1 cut(s) 1425
ApeKI GCWGC 6 cut(s) 283, 388, 685, 959, 1107, 1567
ApoI RAATTY 1 cut(s) 650
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AspLEI GCGC 3 cut(s) 6, 184, 1045
AspS9I GGNCC 2 cut(s) 93, 442
AsuHPI GGTGA 7 cut(s) 281, 532, 688, 784, 1286, 1528, 1595
AsuII TTCGAA 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 1429
BamHI GGATCC 1 cut(s) 1375
BbsI GAAGAC 2 cut(s) 459, 686
Bbv12I GWGCWC 2 cut(s) 1429, 1698
BbvI GCAGC 6 cut(s) 270, 375, 697, 971, 1094, 1579
BccI CCATC 7 cut(s) 116, 940, 1192, 1363, 1376, 1402, 1604
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 3 cut(s) 34, 1388, 1505
BfaI CTAG 2 cut(s) 416, 1326
BfoI RGCGCY 1 cut(s) 1046
BisI GCNGC 6 cut(s) 284, 389, 686, 960, 1108, 1568
BlsI GCNGC 6 cut(s) 285, 390, 687, 961, 1109, 1569
BmgT120I GGNCC 2 cut(s) 93, 442
BmiI GGNNCC 3 cut(s) 95, 585, 1377
BmsI GCATC 7 cut(s) 124, 640, 709, 739, 784, 916, 1480
BpiI GAAGAC 2 cut(s) 459, 686
Bpu10I CCTNAGC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 954
BsaXI ACNNNNNCTCC 2 cut(s) 1669, 1699
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 851
Bse1I ACTGG 2 cut(s) 555, 870
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 954
BseGI GGATG 6 cut(s) 724, 754, 951, 1155, 1516, 1596
BseLI CCNNNNNNNGG 2 cut(s) 323, 851
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 555, 870
BseRI GAGGAG 4 cut(s) 422, 1082, 1187, 1690
BseSI GKGCMC 1 cut(s) 1429
BseXI GCAGC 6 cut(s) 270, 375, 697, 971, 1094, 1579
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 3 cut(s) 629, 754, 1352
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 4 cut(s) 64, 94, 444, 1178
BshVI ATCGAT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 1429, 1698
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 1 cut(s) 1101
BslI CCNNNNNNNGG 2 cut(s) 323, 851
BsmAI GTCTC 3 cut(s) 34, 1388, 1505
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 1101
BsnI GGCC 4 cut(s) 64, 94, 444, 1178
Bsp119I TTCGAA 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 1429, 1698
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
BspACI CCGC 3 cut(s) 153, 440, 1672
BspANI GGCC 4 cut(s) 64, 94, 444, 1178
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 1 cut(s) 10
BspHI TCATGA 2 cut(s) 463, 1032
BspLI GGNNCC 3 cut(s) 95, 585, 1377
BspPI GGATC 2 cut(s) 1370, 1383
BspT104I TTCGAA 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 742
BsrI ACTGG 2 cut(s) 555, 870
BssECI CCNNGG 1 cut(s) 954
BssMI GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
BssNI GRCGYC 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 2 cut(s) 557, 864
BstACI GRCGYC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 742
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 1 cut(s) 471
BstEII GGTNACC 2 cut(s) 949, 1211
BstF5I GGATG 6 cut(s) 724, 754, 951, 1155, 1516, 1596
BstH2I RGCGCY 1 cut(s) 1046
BstHHI GCGC 3 cut(s) 6, 184, 1045
BstKTI GATC 6 cut(s) 14, 463, 696, 879, 1378, 1588
BstMAI GTCTC 3 cut(s) 34, 1388, 1505
BstMBI GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 926, 1330
BstPI GGTNACC 2 cut(s) 949, 1211
BstSLI GKGCMC 1 cut(s) 1429
BstV1I GCAGC 6 cut(s) 270, 375, 697, 971, 1094, 1579
BstV2I GAAGAC 2 cut(s) 459, 686
BstX2I RGATCY 1 cut(s) 1375
BstYI RGATCY 1 cut(s) 1375
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 4 cut(s) 64, 94, 444, 1178
BsuTUI ATCGAT 1 cut(s) 10
BtsCI GGATG 6 cut(s) 724, 754, 951, 1155, 1516, 1596
BtsIMutI CAGTG 3 cut(s) 228, 1283, 1434
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 2 cut(s) 463, 1032
CfoI GCGC 3 cut(s) 6, 184, 1045
Cfr13I GGNCC 2 cut(s) 93, 442
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 4 cut(s) 51, 185, 691, 1659
Csp6I GTAC 6 cut(s) 356, 507, 514, 619, 743, 1360
CviAII CATG 7 cut(s) 144, 433, 464, 979, 1033, 1403, 1450
CviQI GTAC 6 cut(s) 356, 507, 514, 619, 743, 1360
DdeI CTNAG 1 cut(s) 471
DpnI GATC 6 cut(s) 13, 462, 695, 878, 1377, 1587
DpnII GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
DraIII CACNNNGTG 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 557, 864
EarI CTCTTC 2 cut(s) 557, 864
Eco147I AGGCCT 2 cut(s) 64, 1178
Eco57I CTGAAG 1 cut(s) 1307
Eco91I GGTNACC 2 cut(s) 949, 1211
EcoO109I RGGNCCY 1 cut(s) 93
EcoO65I GGTNACC 2 cut(s) 949, 1211
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 7 cut(s) 147, 436, 467, 982, 1036, 1406, 1453
FaqI GGGAC 1 cut(s) 1101
FatI CATG 7 cut(s) 143, 432, 463, 978, 1032, 1402, 1449
FauI CCCGC 2 cut(s) 160, 433
FauNDI CATATG 3 cut(s) 79, 1092, 1617
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 6 cut(s) 284, 389, 686, 960, 1108, 1568
FokI GGATG 6 cut(s) 731, 761, 958, 1162, 1523, 1583
Fsp4HI GCNGC 6 cut(s) 284, 389, 686, 960, 1108, 1568
FspBI CTAG 2 cut(s) 416, 1326
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 183, 1044
GluI GCNGC 6 cut(s) 284, 389, 686, 960, 1108, 1568
GsaI CCCAGC 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 1046
HaeIII GGCC 4 cut(s) 64, 94, 444, 1178
HapII CCGG 1 cut(s) 689
HgaI GACGC 4 cut(s) 51, 185, 691, 1659
HhaI GCGC 3 cut(s) 6, 184, 1045
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 7 cut(s) 147, 436, 467, 982, 1036, 1406, 1453
Hin6I GCGC 3 cut(s) 4, 182, 1043
HinP1I GCGC 3 cut(s) 4, 182, 1043
HindIII AAGCTT 1 cut(s) 1289
HinfI GANTC 3 cut(s) 104, 841, 1553
HpaII CCGG 1 cut(s) 689
HphI GGTGA 7 cut(s) 281, 532, 688, 784, 1286, 1528, 1595
Hpy166II GTNNAC 5 cut(s) 149, 356, 621, 1427, 1519
Hpy188I TCNGA 4 cut(s) 211, 636, 846, 1612
Hpy188III TCNNGA 7 cut(s) 292, 341, 464, 1033, 1115, 1220, 1379
Hpy8I GTNNAC 5 cut(s) 149, 356, 621, 1427, 1519
HpyAV CCTTC 6 cut(s) 260, 1121, 1139, 1454, 1617, 1647
HpyCH4III ACNGT 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 926, 1330
HpyF3I CTNAG 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 7 cut(s) 147, 436, 467, 982, 1036, 1406, 1453
HspAI GCGC 3 cut(s) 4, 182, 1043
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
LmnI GCTCC 3 cut(s) 1612, 1677, 1693
Lsp1109I GCAGC 6 cut(s) 270, 375, 697, 971, 1094, 1579
LweI GCATC 7 cut(s) 124, 640, 709, 739, 784, 916, 1480
MaeI CTAG 2 cut(s) 416, 1326
MaeIII GTNAC 6 cut(s) 217, 861, 887, 949, 1211, 1228
MalI GATC 6 cut(s) 13, 462, 695, 878, 1377, 1587
MboI GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
MflI RGATCY 1 cut(s) 1375
MhlI GDGCHC 2 cut(s) 1429, 1698
MluCI AATT 9 cut(s) 166, 176, 534, 606, 650, 901, 999, 1237, 1532
MlyI GAGTC 1 cut(s) 1547
MseI TTAA 1 cut(s) 764
MslI CAYNNNNRTG 2 cut(s) 1037, 1685
MspA1I CMGCKG 1 cut(s) 962
MspI CCGG 1 cut(s) 689
MwoI GCNNNNNNNGC 2 cut(s) 926, 1330
NdeI CATATG 3 cut(s) 79, 1092, 1617
NdeII GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
NlaIII CATG 7 cut(s) 147, 436, 467, 982, 1036, 1406, 1453
NlaIV GGNNCC 3 cut(s) 95, 585, 1377
NmuCI GTSAC 1 cut(s) 887
NsbI TGCGCA 1 cut(s) 5
NspV TTCGAA 1 cut(s) 532
PagI TCATGA 2 cut(s) 463, 1032
PceI AGGCCT 2 cut(s) 64, 1178
PfeI GAWTC 2 cut(s) 104, 841
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 6 cut(s) 285, 390, 687, 961, 1109, 1569
PleI GAGTC 1 cut(s) 1547
PpsI GAGTC 1 cut(s) 1547
PsiI TTATAA 2 cut(s) 1236, 1341
PspEI GGTNACC 2 cut(s) 949, 1211
PspFI CCCAGC 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 95, 585, 1377
PspPI GGNCC 2 cut(s) 93, 442
PsuI RGATCY 1 cut(s) 1375
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 6 cut(s) 357, 508, 515, 620, 744, 1361
RsaNI GTAC 6 cut(s) 356, 507, 514, 619, 743, 1360
RseI CAYNNNNRTG 2 cut(s) 1037, 1685
SaqAI TTAA 1 cut(s) 764
SatI GCNGC 6 cut(s) 284, 389, 686, 960, 1108, 1568
Sau3AI GATC 6 cut(s) 11, 460, 693, 876, 1375, 1585
Sau96I GGNCC 2 cut(s) 93, 442
SchI GAGTC 1 cut(s) 1547
SduI GDGCHC 2 cut(s) 1429, 1698
SfaNI GCATC 7 cut(s) 124, 640, 709, 739, 784, 916, 1480
SfuI TTCGAA 1 cut(s) 532
SmiMI CAYNNNNRTG 2 cut(s) 1037, 1685
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 9 cut(s) 166, 176, 534, 606, 650, 901, 999, 1237, 1532
SseBI AGGCCT 2 cut(s) 64, 1178
SsiI CCGC 3 cut(s) 153, 440, 1672
SspMI CTAG 2 cut(s) 416, 1326
StuI AGGCCT 2 cut(s) 64, 1178
TaaI ACNGT 1 cut(s) 223
TaqII GACCGA 1 cut(s) 360
TasI AATT 9 cut(s) 166, 176, 534, 606, 650, 901, 999, 1237, 1532
TatI WGTACW 4 cut(s) 513, 618, 742, 1359
TfiI GAWTC 2 cut(s) 104, 841
Tru1I TTAA 1 cut(s) 764
Tru9I TTAA 1 cut(s) 764
TscAI CASTG 3 cut(s) 228, 1290, 1441
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 6 cut(s) 283, 388, 685, 959, 1107, 1567
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 7 cut(s) 96, 421, 480, 575, 967, 1293, 1544
TspGWI ACGGA 2 cut(s) 638, 1311
TspRI CASTG 3 cut(s) 228, 1290, 1441
Van91I CCANNNNNTGG 1 cut(s) 323
VneI GTGCAC 1 cut(s) 1425
XapI RAATTY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XspI CTAG 2 cut(s) 416, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.