Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014350

Physical Location & Seq

Genomic Coordinates Reverse (-)

23850049 .. 23850617

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTCTCTGCGTGTTCATATTATCATTTCATGCCATTTCTAGGGACCCCTGGTTTAAGTTTTGTCAAAGTTTCGCAACCCATGGATGTTCTTGCTGGATTTAAGCTCAATGTGCGTCCTTTTTGTTCAGAAAGTGTTGTAGTCGGTCAAGTTTGGATTTTGATGGGGTTGGCGATTATGGATAACTCTCCCTCGTATTGTGATATGGAGAAAGCTCTTGATCATGTTGGTTTACCATTGACTACTCCATTGGTTGTTCGAGTGCTTGATATATTGTCGTGCACGAGGTATAAGGTGAAGCAGTTTCGAATTGTTTGTGATTTACTGGATTATACGAAGACGCATGACAAGAATAAGGTTCCCGTTGAGGTTCTTTTAAAGATTTTGAAGCAATACACGGACAAGCATCTCACGTATCTGCAGAAATTTGCCAAGAAGAAGAGGATAAGGGCGAAGACGCAGCCGGAAATCAATGCCTTGAACCTGCTGTTGGATGCTTTGTGTAAATGTAGTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

174

Amino Acids

19.64

Weight (kDa)

9.24

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73400
fragaria_vesca	FvH4_5g17981
malus_domestica	MD14G1242500.v1.1
prunus_persica	Prupe.5G240200_v2.0.a1
pyrus_communis	pycom06g21040 pycom06g21050
rosa_chinensis	RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata	RLG00000005521
rosa_multiflora	Rmu_ssc0000330.1_g000014
rosa_rugosa	Rorug06G0407800
rosa_samantha	Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana	Rw7G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	41, 490
AgsI	TTSAA	2 cut(s)	388, 481
AjnI	CCWGG	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	2 cut(s)	106, 215
AluI	AGCT	2 cut(s)	106, 215
Alw21I	GWGCWC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	280
ApaLI	GTGCAC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	460
ApoI	RAATTY	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	307
AsuII	TTCGAA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	344, 461
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	3 cut(s)	46, 47, 360
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	415, 484
BpiI	GAAGAC	2 cut(s)	344, 461
Bpu14I	TTCGAA	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	49, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 490
Bse1I	ACTGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	49, 81
BseGI	GGATG	2 cut(s)	91, 499
BseLI	CCNNNNNNNGG	2 cut(s)	41, 490
BseNI	ACTGG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	41, 490
BsmFI	GGGAC	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	46, 47, 360
BspMAI	CTGCAG	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	49, 81
BssMI	GATC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	414
BstBI	TTCGAA	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	91, 499
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	2 cut(s)	344, 461
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	91, 499
BveI	ACCTGC	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	3 cut(s)	104, 349, 466
CviAII	CATG	4 cut(s)	31, 82, 224, 344
CviJI	RGCY	3 cut(s)	106, 215, 463
CviKI_1	RGCY	3 cut(s)	106, 215, 463
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	4 cut(s)	34, 85, 227, 347
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	30, 81, 223, 343
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	461
FokI	GGATG	2 cut(s)	98, 506
Fsp4HI	GCNGC	1 cut(s)	461
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	1 cut(s)	461
HapII	CCGG	1 cut(s)	464
HgaI	GACGC	3 cut(s)	104, 349, 466
Hin1II	CATG	4 cut(s)	34, 85, 227, 347
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	233, 282
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	2 cut(s)	233, 282
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	282, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	34, 85, 227, 347
KflI	GGGWCCC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	36, 63, 81, 311, 477, 497, 500
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	2 cut(s)	415, 484
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	413
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	4 cut(s)	349, 448, 451, 466
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	309, 425
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	4 cut(s)	202, 279, 361, 435
MseI	TTAA	3 cut(s)	56, 102, 377
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	34, 85, 227, 347
NlaIV	GGNNCC	3 cut(s)	46, 47, 360
NspV	TTCGAA	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	462
Ppu21I	YACGTR	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	46, 47, 360
PspPI	GGNCC	1 cut(s)	45
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	56, 102, 377
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	8 cut(s)	108, 217, 290, 297, 360, 372, 416, 486
SfaNI	GCATC	2 cut(s)	415, 484
SfcI	CTRYAG	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	307
SinI	GGWCC	1 cut(s)	45
Sse9I	AATT	2 cut(s)	309, 425
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	2 cut(s)	259, 307
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	309, 425
Tru1I	TTAA	3 cut(s)	56, 102, 377
Tru9I	TTAA	3 cut(s)	56, 102, 377
TseI	GCWGC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	6, 19
TspGWI	ACGGA	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	425
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.