Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014350

Physical Location & Seq

Genomic Coordinates Reverse (-)

18111255 .. 18113941

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGCTGAACCAGTATCTCAAAACTTCAATTGCTTCGATGCGAGGCCTATATTTCATCAATTTATTCTCTTTCAAGAATCATTCCTTATCCCTCTGCTGCTCTAATGCTAATATCCTTGGATATGTGAGATCCCCGATTGAATCCATATCTCATGTTCGAACTTATTTGCTCTCTGCATCTTCGTCTTATCACCTGGTGCCATTTCTGGGGACCCCTTGTTTGAATTTGGTCAAATTATCGCAGCCCCTGAATGCGCTCGCTGCGTTTAGGGTCTCTGTGCGTCATTTTTGTTCGGAGATTGTTACAGTGGATCAAAGTTTTGACTGTGATGGGAGGAGTGGTATTGAGGACGAGTCATTAGAAAGTGATGTGGATAAGTTTTGCGAGGCCATTATGGATAACTCTAACGCATATTGTAATATGGAGAAGGCTCTTGATCAAGTTGGTCTACCATTGACCACTCCGTTGGTTGTTGGGGTGCTTCAGAGGCTTCGTTTTGAGGAGAAACTAGCATTTAGGTTCTTTATGTGGGCTGGCCGCCGAGAAAATTATGTTCATGAATCTCTGGCGTACAATGATATGATTGACATATTATCTTGCACGAGGTATAAGGTGAAGCAGTTTCGAATTGTTTGTGACTTACTGGATTATATGAAGAGGCACAACAAGAGTAAGGTTCCTGTTGAGGTTCTCTTAACAATTTTGAAGCAATACACGGAAAAGCATCTCACCTATCTACAGAAATTCGCCAAGAAGAAGAGGATACGGGTGAAGACGCAGCCGGAAATCAATGCGTTGAACCTGCTATTGGATGCCCTGTGTAAGTGCAGTCTGGTTCAAGATGCTCAAGACATGTTACAGAGGGTGAAGAAAAAGGTTAAGCCTGATGCTAATACGTACAACATTTTGTTTTTTGGTTGGTGTAGAGTTAGGAACCCGACTAGAGGAATGAAGCTACTGGAAGAGATGATCCAAGTGGGTCATGCACCTGATAATTTCACATACACTACTGCCATTGATGCCTTTTGCAAAGCAGGGATGGTGTCCGAGGCAGCTGAACTTTTTGAATTCATGCGAACCCAAGGTTCTACGATTTCTTCTCCCACTGCAAAAACTTATGCAATTATGATTGTGGCTCTTGTGCAGAATGATAGAATGGAGGAGTGCTTCAAACTTCTCGGACATATGATAAACAGTGGTTGCCTTCCTGATGTTTCTACATACAAGGAATTACTTGAAGGAATGTGTTTGGCTGGAAAGGTTGAGGAGGCTTACAAATTTTTGCAAGAGATGGGAAACAAAGGGCTTTTTGGTTGCAATAAAGTGGAAGATGTGTGCTGCCTATTGGAAGACGTTGTAAACAAGGGAATGAAGTTGCCATATAGCAAGTTTGACTCGTTTCTGATGCAGCTTTCAGTGATTGGTGATCTCCAATCCATCCACAGGCTTTCAGGTCATATGAGACAGTTCTACAATCCTTCTATGGCAAGACGTGTTGCGTTGAACCAGAAGCGGAGGAGCATGAGTTTGAGAGGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

514

Amino Acids

58.47

Weight (kDa)

8.88

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73400
fragaria_vesca	FvH4_5g17981
malus_domestica	MD14G1242500.v1.1
prunus_persica	Prupe.5G240200_v2.0.a1
pyrus_communis	pycom06g21040 pycom06g21050
rosa_chinensis	RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata	RLG00000005521
rosa_multiflora	Rmu_ssc0000330.1_g000014
rosa_rugosa	Rorug06G0407800
rosa_samantha	Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana	Rw7G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	2 cut(s)	538, 1513
AclWI	GGATC	3 cut(s)	123, 318, 964
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	4 cut(s)	223, 743, 1067, 1277
AcuI	CTGAAG	1 cut(s)	467
AdeI	CACNNNGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	572, 899
AfiI	CCNNNNNNNGG	4 cut(s)	206, 808, 944, 1443
AflIII	ACRYGT	2 cut(s)	852, 1492
AjiI	CACGTC	1 cut(s)	1493
AjnI	CCWGG	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	4 cut(s)	955, 1055, 1411, 1539
AluI	AGCT	4 cut(s)	955, 1055, 1411, 1539
Alw26I	GTCTC	2 cut(s)	277, 1456
AlwI	GGATC	3 cut(s)	123, 318, 964
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	3 cut(s)	43, 387, 535
ApeKI	GCWGC	7 cut(s)	96, 241, 260, 778, 1052, 1338, 1408
ApoI	RAATTY	4 cut(s)	223, 743, 1067, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	6 cut(s)	182, 625, 721, 781, 877, 1436
AsuII	TTCGAA	2 cut(s)	157, 625
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	601
BbsI	GAAGAC	2 cut(s)	779, 1356
BbvI	GCAGC	7 cut(s)	83, 247, 253, 790, 1064, 1325, 1420
BccI	CCATC	4 cut(s)	323, 1033, 1285, 1445
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	756
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	277, 1456
BfaI	CTAG	2 cut(s)	509, 942
BfmI	CTRYAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	810
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	8 cut(s)	97, 242, 261, 538, 779, 1053, 1339, 1409
BlsI	GCNGC	8 cut(s)	98, 243, 262, 539, 780, 1054, 1340, 1410
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	1493
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	5 cut(s)	198, 211, 212, 678, 935
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	8 cut(s)	27, 185, 733, 802, 832, 877, 1009, 1395
BpiI	GAAGAC	2 cut(s)	779, 1356
Bpu14I	TTCGAA	2 cut(s)	157, 625
BpuEI	CTTGAG	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	115, 1047, 1081
BsaXI	ACNNNNNCTCC	4 cut(s)	325, 355, 1510, 1540
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 808, 944, 1443
Bse1I	ACTGG	3 cut(s)	10, 648, 963
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	115, 1047, 1081
BseGI	GGATG	3 cut(s)	817, 1044, 1437
BseLI	CCNNNNNNNGG	4 cut(s)	206, 808, 944, 1443
BseNI	ACTGG	3 cut(s)	10, 648, 963
BseRI	GAGGAG	5 cut(s)	349, 515, 1175, 1280, 1531
BseXI	GCAGC	7 cut(s)	83, 247, 253, 790, 1064, 1325, 1420
BsgI	GTGCAG	2 cut(s)	847, 1163
BshFI	GGCC	3 cut(s)	45, 389, 537
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	782
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	4 cut(s)	206, 808, 944, 1443
BsmAI	GTCTC	2 cut(s)	277, 1456
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	45, 389, 537
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	2 cut(s)	157, 625
Bsp143I	GATC	5 cut(s)	128, 310, 436, 969, 1426
BspACI	CCGC	2 cut(s)	538, 1513
BspANI	GGCC	3 cut(s)	45, 389, 537
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	5 cut(s)	198, 211, 212, 678, 935
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	3 cut(s)	123, 318, 964
BspT104I	TTCGAA	2 cut(s)	157, 625
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	10, 648, 963
BssECI	CCNNGG	3 cut(s)	115, 1047, 1081
BssMI	GATC	5 cut(s)	128, 310, 436, 969, 1426
BssSI	CACGAG	1 cut(s)	601
BssT1I	CCWWGG	2 cut(s)	115, 1081
Bst2BI	CACGAG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	4 cut(s)	307, 326, 1196, 1467
Bst6I	CTCTTC	3 cut(s)	650, 752, 957
BstBAI	YACGTR	1 cut(s)	897
BstBI	TTCGAA	2 cut(s)	157, 625
BstC8I	GCNNGC	2 cut(s)	258, 535
BstF5I	GGATG	3 cut(s)	817, 1044, 1437
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	5 cut(s)	131, 313, 439, 972, 1429
BstMAI	GTCTC	2 cut(s)	277, 1456
BstMBI	GATC	5 cut(s)	128, 310, 436, 969, 1426
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 487, 1019
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	737
BstSNI	TACGTA	1 cut(s)	897
BstV1I	GCAGC	7 cut(s)	83, 247, 253, 790, 1064, 1325, 1420
BstV2I	GAAGAC	2 cut(s)	779, 1356
BstX2I	RGATCY	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	3 cut(s)	45, 389, 537
BtrI	CACGTC	1 cut(s)	1493
BtsCI	GGATG	3 cut(s)	817, 1044, 1437
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	4 cut(s)	312, 1104, 1201, 1422
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	258, 535
CaiI	CAGNNNCTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	2 cut(s)	269, 784
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	571, 898
CviAII	CATG	6 cut(s)	152, 557, 853, 983, 1072, 1522
CviQI	GTAC	2 cut(s)	571, 898
DpnI	GATC	5 cut(s)	130, 312, 438, 971, 1428
DpnII	GATC	5 cut(s)	128, 310, 436, 969, 1426
DraIII	CACNNNGTG	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	3 cut(s)	650, 752, 957
EarI	CTCTTC	3 cut(s)	650, 752, 957
Eco105I	TACGTA	1 cut(s)	897
Eco130I	CCWWGG	2 cut(s)	115, 1081
Eco147I	AGGCCT	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	1067
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	2 cut(s)	115, 1081
ErhI	CCWWGG	2 cut(s)	115, 1081
FaeI	CATG	6 cut(s)	155, 560, 856, 986, 1075, 1525
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	6 cut(s)	151, 556, 852, 982, 1071, 1521
FauNDI	CATATG	2 cut(s)	1185, 1458
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	8 cut(s)	97, 242, 261, 538, 779, 1053, 1339, 1409
FokI	GGATG	3 cut(s)	824, 1051, 1424
Fsp4HI	GCNGC	8 cut(s)	97, 242, 261, 538, 779, 1053, 1339, 1409
FspBI	CTAG	2 cut(s)	509, 942
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	8 cut(s)	97, 242, 261, 538, 779, 1053, 1339, 1409
HaeIII	GGCC	3 cut(s)	45, 389, 537
HapII	CCGG	1 cut(s)	782
HgaI	GACGC	2 cut(s)	269, 784
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	6 cut(s)	155, 560, 856, 986, 1075, 1525
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	5 cut(s)	76, 140, 353, 560, 1394
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	6 cut(s)	182, 625, 721, 781, 877, 1436
Hpy166II	GTNNAC	2 cut(s)	449, 1360
Hpy188I	TCNGA	5 cut(s)	295, 486, 1048, 1181, 1404
Hpy188III	TCNNGA	6 cut(s)	73, 434, 557, 839, 848, 1208
Hpy8I	GTNNAC	2 cut(s)	449, 1360
HpyAV	CCTTC	4 cut(s)	421, 1214, 1232, 1488
HpyCH4III	ACNGT	4 cut(s)	307, 326, 1196, 1467
HpyCH4IV	ACGT	3 cut(s)	896, 1353, 1492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 487, 1019
HpySE526I	ACGT	3 cut(s)	896, 1353, 1492
Hsp92II	CATG	6 cut(s)	155, 560, 856, 986, 1075, 1525
HspAI	GCGC	1 cut(s)	254
KflI	GGGWCCC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	128, 310, 436, 969, 1426
LmnI	GCTCC	2 cut(s)	1518, 1536
Lsp1109I	GCAGC	7 cut(s)	83, 247, 253, 790, 1064, 1325, 1420
LweI	GCATC	8 cut(s)	27, 185, 733, 802, 832, 877, 1009, 1395
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	2 cut(s)	509, 942
MaeII	ACGT	3 cut(s)	896, 1353, 1492
MaeIII	GTNAC	3 cut(s)	301, 635, 855
MalI	GATC	5 cut(s)	130, 312, 438, 971, 1428
MboI	GATC	5 cut(s)	128, 310, 436, 969, 1426
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	362, 1388
MseI	TTAA	2 cut(s)	695, 879
MspA1I	CMGCKG	1 cut(s)	1055
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	260, 487, 1019
NdeI	CATATG	2 cut(s)	1185, 1458
NdeII	GATC	5 cut(s)	128, 310, 436, 969, 1426
NlaIII	CATG	6 cut(s)	155, 560, 856, 986, 1075, 1525
NlaIV	GGNNCC	5 cut(s)	198, 211, 212, 678, 935
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	635
NspI	RCATGY	1 cut(s)	856
NspV	TTCGAA	2 cut(s)	157, 625
PagI	TCATGA	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	45
PciI	ACATGT	1 cut(s)	852
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	76, 140, 560
PkrI	GCNGC	8 cut(s)	98, 243, 262, 539, 780, 1054, 1340, 1410
PleI	GAGTC	2 cut(s)	361, 1388
PpsI	GAGTC	2 cut(s)	361, 1388
Ppu21I	YACGTR	1 cut(s)	897
PpuMI	RGGWCCY	1 cut(s)	210
PscI	ACATGT	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	5 cut(s)	198, 211, 212, 678, 935
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	1055
RsaI	GTAC	2 cut(s)	572, 899
RsaNI	GTAC	2 cut(s)	571, 898
SaqAI	TTAA	2 cut(s)	695, 879
SatI	GCNGC	8 cut(s)	97, 242, 261, 538, 779, 1053, 1339, 1409
Sau3AI	GATC	5 cut(s)	128, 310, 436, 969, 1426
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	362, 1388
ScrFI	CCNGG	1 cut(s)	194
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	8 cut(s)	27, 185, 733, 802, 832, 877, 1009, 1395
SfcI	CTRYAG	1 cut(s)	737
SfuI	TTCGAA	2 cut(s)	157, 625
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
SnaBI	TACGTA	1 cut(s)	897
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	2 cut(s)	538, 1513
SspMI	CTAG	2 cut(s)	509, 942
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	115, 1081
TaaI	ACNGT	4 cut(s)	307, 326, 1196, 1467
TaiI	ACGT	3 cut(s)	899, 1356, 1495
TaqI	TCGA	3 cut(s)	35, 157, 625
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	76, 140, 560
Tru1I	TTAA	2 cut(s)	695, 879
Tru9I	TTAA	2 cut(s)	695, 879
TscAI	CASTG	4 cut(s)	312, 1111, 1201, 1422
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	7 cut(s)	96, 241, 260, 778, 1052, 1338, 1408
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	7 cut(s)	43, 545, 573, 668, 965, 1060, 1385
TspGWI	ACGGA	2 cut(s)	453, 731
TspRI	CASTG	4 cut(s)	312, 1111, 1201, 1422
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	4 cut(s)	223, 743, 1067, 1277
XceI	RCATGY	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	2 cut(s)	509, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.