Rorug06G0407800

Pentatricopeptide repeat-containing protein At1g73400

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014350
Physical Location & Seq
Forward (+)
55074536 .. 55075699
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0407800.1

Sequence Viewer

Length: 885 bp
ATGCATCCAACTATAAATACCTACCAAATCTCCCTCTTCATTCACCAAATCCAACATCAACGATTAACTTCTTCCATCCACGACTACTCTACCATTCTTCTAAGATTCAGTTTCTCTCTAATGGCAATCACCATGACCTCAAACAAGCTCAATCTCTATCTTCTTCCTTTGATCATTGCATCATTAGCTACAGCAAACCTAGTTTCCGCAACAGTTTTTACGCTGCAAAACCGATGCCCCTACACAGTCTGGCCCGGCACACTCTCCGGAAACGGCGCCGCAGTTCTCGGCGAAGGCGGTTTCGCCATGTTCCCCGGTGCATTAGTCCAGCTCACAGCCCCGGCCGGCTGGTCCGGCCGCTTCTGGGCCAGAACCGGCTGCAACTTCGACGAAGCCGGTAACGGAAACTGCCTCACCGGAGACTGCGGCTCCCTAAAATGCACCGGCGGCGGCGCACCTCCCGTCACCTTGGCTGAGTTCACCATCGGGTCGAGCGTAACCGACAAGGACTTCTATGACGTCAGCCTCGTCGACGGTTACAACGTCGGCATGGGGCTGAGGGCCACCGGAGGAGACGGCGACTGCCAGTACGCTGGGTGCGTGACGGACTTGAACGCCAACTGCCCGCCCGAGTTGCGGGTCACGGATTCGGGTTCGGGTGTTGTGGTGGCTTGTAAGAGCGCGTGCGAGGCGTTCAACGCGCCTGAGTTTTGCTGCACCGGCGACCACGCCACCCCGCAGACTTGCTCTCCGACTCAGTACTCCGCCATGTTCAAGAGTGCGTGTCCCACGGCGTATAGCTACGCTTATGATGATGCTTCAAGCACCTGTACCTGTACCGGGTCGGATTACTTGATCACATTTTGCCCCACCGGGTCATCGTGA

Protein Analysis

294

Amino Acids

30.9

Weight (kDa)

4.78

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 77 - 290 1.6e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014350)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73400
fragaria_vesca FvH4_5g17981
malus_domestica MD14G1242500.v1.1
prunus_persica Prupe.5G240200_v2.0.a1
pyrus_communis pycom06g21040 pycom06g21050
rosa_chinensis RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata RLG00000005521
rosa_multiflora Rmu_ssc0000330.1_g000014
rosa_rugosa Rorug06G0407800
rosa_samantha Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana Rw7G000610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 531
AccII CGCG 2 cut(s) 683, 701
AccIII TCCGGA 1 cut(s) 266
AcoI YGGCCR 2 cut(s) 342, 355
AcyI GRCGYC 2 cut(s) 276, 519
AfaI GTAC 4 cut(s) 590, 761, 832, 838
AfiI CCNNNNNNNGG 3 cut(s) 364, 636, 840
AgsI TTSAA 4 cut(s) 613, 697, 775, 822
AluBI AGCT 4 cut(s) 148, 188, 331, 801
AluI AGCT 4 cut(s) 148, 188, 331, 801
Alw26I GTCTC 2 cut(s) 414, 567
Ama87I CYCGRG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 5 cut(s) 251, 342, 355, 366, 561
ApeKI GCWGC 3 cut(s) 223, 378, 714
AspLEI GCGC 4 cut(s) 278, 455, 683, 703
AspS9I GGNCC 4 cut(s) 252, 351, 366, 561
AsuC2I CCSGG 5 cut(s) 255, 315, 341, 841, 874
AsuHPI GGTGA 5 cut(s) 35, 121, 406, 457, 472
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 557
BbvI GCAGC 3 cut(s) 210, 365, 701
BccI CCATC 2 cut(s) 83, 491
BceAI ACGGC 3 cut(s) 289, 592, 807
BclI TGATCA 2 cut(s) 171, 855
BcnI CCSGG 5 cut(s) 255, 315, 341, 841, 874
BcoDI GTCTC 2 cut(s) 414, 567
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 279
BisI GCNGC 8 cut(s) 224, 279, 358, 379, 427, 448, 451, 715
BlsI GCNGC 8 cut(s) 225, 280, 359, 380, 428, 449, 452, 716
BmcAI AGTACT 1 cut(s) 761
Bme1390I CCNGG 5 cut(s) 255, 315, 341, 841, 874
Bme18I GGWCC 1 cut(s) 351
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 4 cut(s) 252, 351, 366, 561
BmiI GGNNCC 2 cut(s) 277, 430
BmrFI CCNGG 5 cut(s) 255, 315, 341, 841, 874
BmsI GCATC 4 cut(s) 13, 188, 224, 805
Bpu10I CCTNAGC 1 cut(s) 557
BpuMI CCSGG 5 cut(s) 255, 315, 341, 841, 874
BsaHI GRCGYC 2 cut(s) 276, 519
BsaJI CCNNGG 4 cut(s) 313, 339, 468, 789
BsaWI WCCGGW 3 cut(s) 266, 416, 566
BsaXI ACNNNNNCTCC 6 cut(s) 14, 44, 413, 443, 733, 763
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 636, 840
Bse118I RCCGGY 5 cut(s) 344, 374, 395, 443, 719
Bse1I ACTGG 1 cut(s) 586
Bse3DI GCAATG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 266
BseDI CCNNGG 4 cut(s) 313, 339, 468, 789
BseGI GGATG 2 cut(s) 4, 75
BseLI CCNNNNNNNGG 3 cut(s) 364, 636, 840
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 4 cut(s) 465, 548, 696, 770
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 1 cut(s) 585
BseX3I CGGCCG 2 cut(s) 342, 355
BseXI GCAGC 3 cut(s) 210, 365, 701
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 700
Bsh1236I CGCG 2 cut(s) 683, 701
Bsh1285I CGRYCG 2 cut(s) 345, 358
BshFI GGCC 5 cut(s) 253, 344, 357, 368, 563
BshNI GGYRCC 1 cut(s) 275
BsiEI CGRYCG 2 cut(s) 345, 358
BsiHKCI CYCGRG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 3 cut(s) 364, 636, 840
BsmAI GTCTC 2 cut(s) 414, 567
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 5 cut(s) 253, 344, 357, 368, 563
BsoBI CYCGRG 1 cut(s) 629
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 171, 855
BspANI GGCC 5 cut(s) 253, 344, 357, 368, 563
BspCNI CTCAG 4 cut(s) 466, 549, 697, 769
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 2 cut(s) 683, 701
BspLI GGNNCC 2 cut(s) 277, 430
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 5 cut(s) 344, 374, 395, 443, 719
BsrI ACTGG 1 cut(s) 586
BssAI RCCGGY 5 cut(s) 344, 374, 395, 443, 719
BssECI CCNNGG 4 cut(s) 313, 339, 468, 789
BssMI GATC 2 cut(s) 171, 855
BssNI GRCGYC 2 cut(s) 276, 519
BssT1I CCWWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 214, 247, 536
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 2 cut(s) 276, 519
BstC8I GCNNGC 3 cut(s) 346, 626, 685
BstDEI CTNAG 5 cut(s) 101, 474, 557, 705, 756
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 2 cut(s) 4, 75
BstFNI CGCG 2 cut(s) 683, 701
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 4 cut(s) 278, 455, 683, 703
BstKTI GATC 2 cut(s) 174, 858
BstMAI GTCTC 2 cut(s) 414, 567
BstMBI GATC 2 cut(s) 171, 855
BstMCI CGRYCG 2 cut(s) 345, 358
BstMWI GCNNNNNNNGC 7 cut(s) 185, 354, 447, 634, 689, 698, 720
BstSCI CCNGG 5 cut(s) 253, 313, 339, 839, 872
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 2 cut(s) 683, 701
BstV1I GCAGC 3 cut(s) 210, 365, 701
BstXI CCANNNNNNTGG 1 cut(s) 593
BstZI CGGCCG 2 cut(s) 342, 355
BsuRI GGCC 5 cut(s) 253, 344, 357, 368, 563
BtgI CCRYGG 1 cut(s) 789
BtsCI GGATG 2 cut(s) 4, 75
Cac8I GCNNGC 3 cut(s) 346, 626, 685
CfoI GCGC 4 cut(s) 278, 455, 683, 703
Cfr10I RCCGGY 5 cut(s) 344, 374, 395, 443, 719
Cfr13I GGNCC 4 cut(s) 252, 351, 366, 561
Csp6I GTAC 4 cut(s) 589, 760, 831, 837
CviAII CATG 4 cut(s) 133, 307, 550, 769
CviQI GTAC 4 cut(s) 589, 760, 831, 837
DdeI CTNAG 5 cut(s) 101, 474, 557, 705, 756
DinI GGCGCC 1 cut(s) 277
DpnI GATC 2 cut(s) 173, 857
DpnII GATC 2 cut(s) 171, 855
EaeI YGGCCR 2 cut(s) 342, 355
EagI CGGCCG 2 cut(s) 342, 355
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 754
EclXI CGGCCG 2 cut(s) 342, 355
Eco130I CCWWGG 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 351
Eco52I CGGCCG 2 cut(s) 342, 355
Eco88I CYCGRG 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 468
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 4 cut(s) 136, 310, 553, 772
FaiI YATR 8 cut(s) 14, 134, 308, 516, 551, 770, 798, 810
FaqI GGGAC 1 cut(s) 771
FatI CATG 4 cut(s) 132, 306, 549, 768
FauI CCCGC 3 cut(s) 630, 633, 744
FbaI TGATCA 2 cut(s) 171, 855
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 8 cut(s) 224, 279, 358, 379, 427, 448, 451, 715
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 8 cut(s) 224, 279, 358, 379, 427, 448, 451, 715
FspBI CTAG 1 cut(s) 200
GlaI GCGC 4 cut(s) 277, 454, 682, 702
GluI GCNGC 8 cut(s) 224, 279, 358, 379, 427, 448, 451, 715
GsaI CCCAGC 1 cut(s) 597
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 5 cut(s) 253, 344, 357, 368, 563
HhaI GCGC 4 cut(s) 278, 455, 683, 703
Hin1I GRCGYC 2 cut(s) 276, 519
Hin1II CATG 4 cut(s) 136, 310, 553, 772
Hin6I GCGC 4 cut(s) 276, 453, 681, 701
HinP1I GCGC 4 cut(s) 276, 453, 681, 701
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HinfI GANTC 3 cut(s) 105, 647, 754
HphI GGTGA 5 cut(s) 35, 121, 406, 457, 472
Hpy166II GTNNAC 2 cut(s) 480, 532
Hpy188I TCNGA 2 cut(s) 753, 847
Hpy188III TCNNGA 3 cut(s) 267, 775, 882
Hpy8I GTNNAC 2 cut(s) 480, 532
Hpy99I CGWCG 4 cut(s) 392, 533, 536, 548
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 3 cut(s) 214, 247, 536
HpyCH4IV ACGT 2 cut(s) 519, 543
HpyCH4V TGCA 7 cut(s) 4, 179, 226, 320, 381, 441, 717
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 354, 447, 634, 689, 698, 720
HpyF3I CTNAG 5 cut(s) 101, 474, 557, 705, 756
HpySE526I ACGT 2 cut(s) 519, 543
Hsp92I GRCGYC 2 cut(s) 276, 519
Hsp92II CATG 4 cut(s) 136, 310, 553, 772
HspAI GCGC 4 cut(s) 276, 453, 681, 701
KasI GGCGCC 1 cut(s) 275
Kpn2I TCCGGA 1 cut(s) 266
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 171, 855
Kzo9I GATC 2 cut(s) 171, 855
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 3 cut(s) 210, 365, 701
LweI GCATC 4 cut(s) 13, 188, 224, 805
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 519, 543
MaeIII GTNAC 6 cut(s) 398, 463, 496, 536, 601, 640
MalI GATC 2 cut(s) 173, 857
MboI GATC 2 cut(s) 171, 855
MboII GAAGA 5 cut(s) 28, 63, 89, 152, 155
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 4 cut(s) 32, 76, 776, 825
MnlI CCTC 8 cut(s) 44, 148, 422, 468, 536, 552, 563, 682
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 344
MseI TTAA 1 cut(s) 65
MspR9I CCNGG 5 cut(s) 255, 315, 341, 841, 874
MvnI CGCG 2 cut(s) 683, 701
MwoI GCNNNNNNNGC 7 cut(s) 185, 354, 447, 634, 689, 698, 720
NaeI GCCGGC 1 cut(s) 346
NarI GGCGCC 1 cut(s) 276
NciI CCSGG 5 cut(s) 255, 315, 341, 841, 874
NdeII GATC 2 cut(s) 171, 855
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 4 cut(s) 136, 310, 553, 772
NlaIV GGNNCC 2 cut(s) 277, 430
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 3 cut(s) 463, 601, 640
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 4 cut(s) 492, 525, 540, 597
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 105, 647
PkrI GCNGC 8 cut(s) 225, 280, 359, 380, 428, 449, 452, 716
PleI GAGTC 1 cut(s) 748
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 277, 430
PspPI GGNCC 4 cut(s) 252, 351, 366, 561
RsaI GTAC 4 cut(s) 590, 761, 832, 838
RsaNI GTAC 4 cut(s) 589, 760, 831, 837
SalI GTCGAC 1 cut(s) 530
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 8 cut(s) 224, 279, 358, 379, 427, 448, 451, 715
Sau3AI GATC 2 cut(s) 171, 855
Sau96I GGNCC 4 cut(s) 252, 351, 366, 561
ScaI AGTACT 1 cut(s) 761
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 5 cut(s) 255, 315, 341, 841, 874
SfaNI GCATC 4 cut(s) 13, 188, 224, 805
SfcI CTRYAG 1 cut(s) 189
SfoI GGCGCC 1 cut(s) 277
SgrAI CRCCGGYG 2 cut(s) 443, 719
SgrDI CGTCGACG 1 cut(s) 530
SinI GGWCC 1 cut(s) 351
SspDI GGCGCC 1 cut(s) 275
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 5 cut(s) 253, 313, 339, 839, 872
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 214, 247, 536
TaiI ACGT 2 cut(s) 522, 546
TaqI TCGA 3 cut(s) 387, 491, 531
TatI WGTACW 1 cut(s) 759
TauI GCSGC 5 cut(s) 281, 360, 429, 450, 453
TfiI GAWTC 2 cut(s) 105, 647
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 3 cut(s) 463, 601, 640
TseI GCWGC 3 cut(s) 223, 378, 714
Tsp45I GTSAC 3 cut(s) 463, 601, 640
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 3 cut(s) 417, 620, 659
VpaK11BI GGWCC 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 520
ZrmI AGTACT 1 cut(s) 761
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.