Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014350

Physical Location & Seq

Genomic Coordinates Forward (+)

498561 .. 500257

Gene Structure 1697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGCGCAATCGATCTCTTACAACTTCTATTGCTTCCTTGAGAAGCCTATGCTTCGCCCAGAGGCCTGTGTCTTATATTATATATGAATATGTTAGGCCCCCAATCGAACCCATCTCCATCTTCCAAAATACAACCCATTATTCCCATAGTGTTACAGTGGGTCAAAGTTTTGAATGTGTTGGGAGTGGTAATGCTTTAGAAGGTGATGTCGATAAGCTTTTCGAGATTATTATGGATAATGCCCAGCCACATTGTGATATGGAGAAAGCTCTCAACCTAGCTGGTGTACCATTGACTACTGATTTGGTTGTTCAGGTTTTTCATGTGGGCGGCCAAAAGGAAAACTATGATCATGAAGCTCAGGCGTATAATGAGATGATTGATATATTGTCGAGTACCAAGTACAAGGTGAAGCAGTTCCGAATTGTTTGTGATTTACTGGATTATATGAAGAGGCATAACAAGAGTAAGCAGTACACGGAGAAGCATCTGACCTATCTGCAGAAATTTGCCAAGAAGAAGAAGATAAGGGTGAAGACGCAGCCGGAGATCAATGCCTTGAACTTTCTATTGGATGCCCTGTGCAAGTGCAGTCTTAAAAATATCAAGCCTGATGCGAATACATACAACATTTTGTTTTTCGGTTGGTGTAGGGTTAGGAATCCGAGTAGAGGAATGAGGTTACTGGAAGAGATGATTGAAGTGGGTCACACGCCTGATAATTTCACTTACACTACTGCCATTGATGCCTTTTGCAAAGCAGGGATGGTTACCGAGGCAGCTGAACTTTTTGAGTTCATGAGAACAAAAGGTTGTACAATTTCTTCTCCTACTGCAAAAACTTATGCAATCATGATTGTGGCGCTTGTGGAGAATGACAGAATGGAGGAGTGCTTCAAACTTCTGGGACATATGATAAGTAGTGGCTGCCTTCCTGATGTTTCTACATACAAGGAACTACTCGAAGGGATGTGTTTGGCTGGAAAGGTCGAGGAGGCCTACAAGTTCTTGCAGGAGATGGGAAACAAAGGTTACCCTCCCGATATAGTTACTTATAATTGTTTTCTAAAGGTGCTGTGTGAGAATAAAAAGGGTGATGAAGCACTGAAGCTTTACGGGAGAATGATAGATATAGGTTGTATGCCTAGTGTGCAGACTTATAATATGTTGATTTCAATGTACTTTGAGATGGGTGATCCTGATGGGGCATTTGAGACTTGGCATGAGATGGATAAGAGGGGCTGTGCACAGGACACTGATACTTATTGCATGATGATTGAAGGGCTTTTCGGTTGCAATAAAGTGGAAGATGCGTGTTGTCTCTTGGAGGATGTGGTGAACAAGGGAATGAAATTGCCATATACCAAGTTTGACTCCTTTCTAATGCAGCTTTCTGTGATTGGTGATCTTCAAGCCATCCACAGACTTTCGGAGCATATGAGAAGGTTCTATAATCCTTCTATGGCAAGACGCTTTGCATTGAACCAGAAGCGGAGGAGCATTAGTATGAGGGAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

506

Amino Acids

57.92

Weight (kDa)

6.88

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	204 - 253	7.6e-12	PPR repeat family
PPR_long	PF17177	224 - 340	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	236 - 268	4.3e-11	PPR repeat
PPR	PF01535	242 - 272	5.2e-08	PPR repeat
PPR_2	PF13041	243 - 289	4.9e-09	PPR repeat family
PPR_2	PF13041	277 - 325	2.2e-09	PPR repeat family
TPR_24	PF23276	282 - 374	6.9e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	301 - 360	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	309 - 340	1.1e-09	PPR repeat
PPR_2	PF13041	316 - 360	8.3e-11	PPR repeat family
PPR_3	PF13812	337 - 394	4.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	343 - 375	2.6e-06	PPR repeat
PPR_2	PF13041	347 - 394	7.7e-14	PPR repeat family
PPR	PF01535	350 - 380	4.9e-06	PPR repeat
PPR_1	PF12854	379 - 410	1.8e-06	PPR repeat
PPR_2	PF13041	382 - 429	1.5e-13	PPR repeat family
PPR	PF01535	386 - 415	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73400
fragaria_vesca	FvH4_5g17981
malus_domestica	MD14G1242500.v1.1
prunus_persica	Prupe.5G240200_v2.0.a1
pyrus_communis	pycom06g21040 pycom06g21050
rosa_chinensis	RchiOBHm_Chr7g0177611 RchiOBHm_Chr7g0224181
rosa_laevigata	RLG00000005521
rosa_multiflora	Rmu_ssc0000330.1_g000014
rosa_rugosa	Rorug06G0407800
rosa_samantha	Rh7AG007100 Rh7BG007100 Rh7CG007600 Rh7DG007200 Rh7DG007300
rosa_wichuraiana	Rw7G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1056, 1161
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	2 cut(s)	330, 1492
AclWI	GGATC	1 cut(s)	1190
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	1127
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	6 cut(s)	288, 397, 404, 476, 817, 1181
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgsI	TTSAA	8 cut(s)	173, 562, 701, 898, 1176, 1280, 1412, 1483
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	7 cut(s)	217, 269, 281, 359, 782, 1111, 1390
AluI	AGCT	7 cut(s)	217, 269, 281, 359, 782, 1111, 1390
Alw21I	GWGCWC	1 cut(s)	1249
Alw26I	GTCTC	2 cut(s)	1208, 1325
Alw44I	GTGCAC	1 cut(s)	1245
AlwI	GGATC	1 cut(s)	1190
AoxI	GGCC	4 cut(s)	62, 95, 331, 996
ApaLI	GTGCAC	1 cut(s)	1245
ApeKI	GCWGC	4 cut(s)	541, 779, 927, 1387
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	6, 865
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	7 cut(s)	215, 421, 544, 1106, 1205, 1348, 1415
BaeGI	GKGCMC	1 cut(s)	1249
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	1249
BbvI	GCAGC	4 cut(s)	553, 791, 914, 1399
BccI	CCATC	8 cut(s)	119, 125, 760, 1012, 1183, 1196, 1222, 1424
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	1208, 1325
BfaI	CTAG	2 cut(s)	278, 1146
BfmI	CTRYAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	866
BisI	GCNGC	5 cut(s)	331, 542, 780, 928, 1388
BlsI	GCNGC	5 cut(s)	332, 543, 781, 929, 1389
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	98
BmsI	GCATC	5 cut(s)	496, 565, 604, 736, 1300
BpiI	GAAGAC	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	774
BsaXI	ACNNNNNCTCC	2 cut(s)	1489, 1519
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	444, 690
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	5 cut(s)	580, 771, 975, 1336, 1416
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	444, 690
BseRI	GAGGAG	3 cut(s)	902, 1007, 1510
BseSI	GKGCMC	1 cut(s)	1249
BseXI	GCAGC	4 cut(s)	553, 791, 914, 1399
BseYI	CCCAGC	1 cut(s)	243
BsgI	GTGCAG	2 cut(s)	610, 1172
BshFI	GGCC	4 cut(s)	64, 97, 333, 998
BshVI	ATCGAT	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	1249
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	921
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	1208, 1325
BsmFI	GGGAC	1 cut(s)	921
BsnI	GGCC	4 cut(s)	64, 97, 333, 998
Bsp1286I	GDGCHC	1 cut(s)	1249
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	5 cut(s)	11, 349, 549, 1195, 1405
BspACI	CCGC	2 cut(s)	330, 1492
BspANI	GGCC	4 cut(s)	64, 97, 333, 998
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	10
BspHI	TCATGA	3 cut(s)	352, 798, 852
BspLI	GGNNCC	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	504
BspPI	GGATC	1 cut(s)	1190
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	2 cut(s)	444, 690
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	5 cut(s)	11, 349, 549, 1195, 1405
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	446, 684
BstAUI	TGTACA	1 cut(s)	815
BstDEI	CTNAG	1 cut(s)	360
BstEII	GGTNACC	2 cut(s)	769, 1031
BstF5I	GGATG	5 cut(s)	580, 771, 975, 1336, 1416
BstH2I	RGCGCY	1 cut(s)	866
BstHHI	GCGC	2 cut(s)	6, 865
BstKTI	GATC	5 cut(s)	14, 352, 552, 1198, 1408
BstMAI	GTCTC	2 cut(s)	1208, 1325
BstMBI	GATC	5 cut(s)	11, 349, 549, 1195, 1405
BstMWI	GCNNNNNNNGC	2 cut(s)	746, 1150
BstPI	GGTNACC	2 cut(s)	769, 1031
BstSFI	CTRYAG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	1249
BstV1I	GCAGC	4 cut(s)	553, 791, 914, 1399
BstV2I	GAAGAC	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	4 cut(s)	64, 97, 333, 998
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	5 cut(s)	580, 771, 975, 1336, 1416
BtsIMutI	CAGTG	3 cut(s)	162, 1103, 1254
CciI	TCATGA	3 cut(s)	352, 798, 852
CfoI	GCGC	2 cut(s)	6, 865
Cfr13I	GGNCC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	10
CseI	GACGC	2 cut(s)	547, 1479
Csp6I	GTAC	6 cut(s)	287, 396, 403, 475, 816, 1180
CviAII	CATG	6 cut(s)	323, 353, 799, 853, 1223, 1270
CviQI	GTAC	6 cut(s)	287, 396, 403, 475, 816, 1180
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	5 cut(s)	13, 351, 551, 1197, 1407
DpnII	GATC	5 cut(s)	11, 349, 549, 1195, 1405
DraIII	CACNNNGTG	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	446, 684
EarI	CTCTTC	2 cut(s)	446, 684
Eco147I	AGGCCT	2 cut(s)	64, 998
Eco57I	CTGAAG	1 cut(s)	1127
Eco91I	GGTNACC	2 cut(s)	769, 1031
EcoO109I	RGGNCCY	1 cut(s)	96
EcoO65I	GGTNACC	2 cut(s)	769, 1031
FaeI	CATG	6 cut(s)	326, 356, 802, 856, 1226, 1273
FaqI	GGGAC	1 cut(s)	921
FatI	CATG	6 cut(s)	322, 352, 798, 852, 1222, 1269
FauNDI	CATATG	2 cut(s)	912, 1437
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	5 cut(s)	331, 542, 780, 928, 1388
FokI	GGATG	5 cut(s)	587, 778, 982, 1343, 1403
Fsp4HI	GCNGC	5 cut(s)	331, 542, 780, 928, 1388
FspBI	CTAG	2 cut(s)	278, 1146
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 864
GluI	GCNGC	5 cut(s)	331, 542, 780, 928, 1388
GsaI	CCCAGC	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	866
HaeIII	GGCC	4 cut(s)	64, 97, 333, 998
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	2 cut(s)	547, 1479
HhaI	GCGC	2 cut(s)	6, 865
Hin1II	CATG	6 cut(s)	326, 356, 802, 856, 1226, 1273
Hin6I	GCGC	2 cut(s)	4, 863
HinP1I	GCGC	2 cut(s)	4, 863
HindIII	AAGCTT	2 cut(s)	215, 1109
HinfI	GANTC	2 cut(s)	661, 1373
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	7 cut(s)	215, 421, 544, 1106, 1205, 1348, 1415
Hpy166II	GTNNAC	4 cut(s)	287, 477, 1247, 1339
Hpy188I	TCNGA	4 cut(s)	422, 492, 666, 1432
Hpy188III	TCNNGA	7 cut(s)	223, 353, 799, 853, 935, 1040, 1199
Hpy8I	GTNNAC	4 cut(s)	287, 477, 1247, 1339
HpyAV	CCTTC	6 cut(s)	194, 941, 959, 1274, 1437, 1467
HpyCH4III	ACNGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	746, 1150
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	6 cut(s)	326, 356, 802, 856, 1226, 1273
HspAI	GCGC	2 cut(s)	4, 863
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	11, 349, 549, 1195, 1405
LmnI	GCTCC	2 cut(s)	1432, 1497
Lsp1109I	GCAGC	4 cut(s)	553, 791, 914, 1399
LweI	GCATC	5 cut(s)	496, 565, 604, 736, 1300
MaeI	CTAG	2 cut(s)	278, 1146
MaeIII	GTNAC	6 cut(s)	151, 681, 707, 769, 1031, 1048
MalI	GATC	5 cut(s)	13, 351, 551, 1197, 1407
MboI	GATC	5 cut(s)	11, 349, 549, 1195, 1405
MhlI	GDGCHC	1 cut(s)	1249
MluCI	AATT	6 cut(s)	423, 506, 721, 819, 1057, 1352
MlyI	GAGTC	1 cut(s)	1367
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	2 cut(s)	857, 1505
MspA1I	CMGCKG	1 cut(s)	782
MspI	CCGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	746, 1150
NdeI	CATATG	2 cut(s)	912, 1437
NdeII	GATC	5 cut(s)	11, 349, 549, 1195, 1405
NlaIII	CATG	6 cut(s)	326, 356, 802, 856, 1226, 1273
NlaIV	GGNNCC	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	707
NsbI	TGCGCA	1 cut(s)	5
PagI	TCATGA	3 cut(s)	352, 798, 852
PceI	AGGCCT	2 cut(s)	64, 998
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	661
PkrI	GCNGC	5 cut(s)	332, 543, 781, 929, 1389
PleI	GAGTC	1 cut(s)	1367
PpsI	GAGTC	1 cut(s)	1367
PsiI	TTATAA	2 cut(s)	1056, 1161
PspEI	GGTNACC	2 cut(s)	769, 1031
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	504
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	6 cut(s)	288, 397, 404, 476, 817, 1181
RsaNI	GTAC	6 cut(s)	287, 396, 403, 475, 816, 1180
RseI	CAYNNNNRTG	2 cut(s)	857, 1505
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	5 cut(s)	331, 542, 780, 928, 1388
Sau3AI	GATC	5 cut(s)	11, 349, 549, 1195, 1405
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	1367
SduI	GDGCHC	1 cut(s)	1249
SfaNI	GCATC	5 cut(s)	496, 565, 604, 736, 1300
SfcI	CTRYAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	857, 1505
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	6 cut(s)	423, 506, 721, 819, 1057, 1352
SseBI	AGGCCT	2 cut(s)	64, 998
SsiI	CCGC	2 cut(s)	330, 1492
SspMI	CTAG	2 cut(s)	278, 1146
StuI	AGGCCT	2 cut(s)	64, 998
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	7 cut(s)	10, 105, 210, 222, 392, 963, 990
TasI	AATT	6 cut(s)	423, 506, 721, 819, 1057, 1352
TatI	WGTACW	4 cut(s)	402, 474, 815, 1179
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	162, 1110, 1261
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	4 cut(s)	541, 779, 927, 1387
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	7 cut(s)	99, 311, 369, 464, 787, 1113, 1364
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	3 cut(s)	162, 1110, 1261
VneI	GTGCAC	1 cut(s)	1245
XapI	RAATTY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	278, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.